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re3data: r3d100010098 , r3d100010098
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re3data: r3d100012277 , r3d100012277
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For further information contact us at helpdesk@openaire.eu - Data Repository Austria Compatibility:Not yet registeredPartners:International Atomic Energy Agency, Nuclear Data Section, Atomic and Molecular Data Unit, International Atomic Energy Agency, Nuclear Data Section, Atomic and Molecular Data Unit Natural Sciences, Optics, Quantum Optics and Physics of Atoms, Molecules and Plasmas, PhysicsInternational Atomic Energy Agency, Nuclear Data Section, Atomic and Molecular Data Unit,International Atomic Energy Agency, Nuclear Data Section, Atomic and Molecular Data Unit
re3data: r3d100011415 , r3d100011415
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany, Switzerland Compatibility:Not yet registeredPartners:AdW, RISM Editorial Center, RISM Zentralredaktion, Swiss RISM Office, RISM Digital Center +6 partners Humanities and Social Sciences, Fine Arts, Music, Theatre and Media Studies, MusicologyAdW,RISM Editorial Center,RISM Zentralredaktion,Swiss RISM Office,RISM Digital Center,Berlin State Library,RISM Editorial Center,Staatsbibliothek zu Berlin - Preußischer Kulturbesitz,RISM Zentralredaktion,BSB,BSB
re3data: r3d100013190 , r3d100013190
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Alternative cleavage and polyadenylation (APA) of RNAs gives rise to isoforms with different terminal exons, which in turn determine the fate of the RNA and the encoded protein. APA has thus been implicated in the regulation of cell proliferation, differentiation and disease development. PolyASite is a portal to the curated set of poly(A) sites inferred from publicly available 3’ end sequencing datasets. It allows efficient finding, exploration and export of poly(A) sites in several organisms. In constructing our poly(A) site atlas, we applied uniform quality measures, including the flagging of putative internal priming sites, to input datasets originating from different 3’ end sequencing techniques, cell types or tissues. Through integrated processing of all data, we identified and clustered sites that are closely spaced and share polyadenylation signals, as these are likely the result of stochastic variations in processing. For each cluster, we identified the representative - most frequently processed - site and estimated the relative use in the transcriptome across all samples. While other existing alternative polyadenylation databases rely on a single experimental method, or on poly(A) site estimation from RNA-seq data, PolyASite is built on data from several 3’ end sequencing techniques. This allows a broader coverage of cell types and poly(A) sites to support further genomics studies.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Austria Compatibility:OpenAIRE Basic (DRIVER OA)Partners:FH Campus Wien - University of Applied Sciences, FH Campus Wien - University of Applied SciencesFH Campus Wien - University of Applied Sciences,FH Campus Wien - University of Applied SciencesOAI-PMH URL: https://digital.obvsg.at/obvfcw/oai/
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For further information contact us at helpdesk@openaire.eu - Data Repository United States, Austria, France, Germany Compatibility:Not yet registeredPartners:NASA, TUW, Vienna University of Technology, Department of Geodesy and Geoinformation, OPAR, BKG +11 partners Natural Sciences, Geophysics and Geodesy, Geosciences (including Geography)NASA,TUW,Vienna University of Technology, Department of Geodesy and Geoinformation,OPAR,BKG,GSFC,Vienna University of Technology, Department of Geodesy and Geoinformation,IGG,Massachusetts Institute of Technology, Haystack Observatory,University of Bonn,NASA,Massachusetts Institute of Technology, Haystack Observatory,BKG,Paris Observatory,IGG,CDDIS
re3data: r3d100010531 , r3d100010531
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For further information contact us at helpdesk@openaire.eu - Data Repository Switzerland Compatibility:Not yet registeredPartners:Diplomatische Dokumente der Schweiz, Rechtsquellenstiftung des Schweizerischen Juristenvereins, histHub, Historisches Lexikon der Schweiz, Swissuniversities +6 partners Humanities and Social Sciences, History, LinguisticsDiplomatische Dokumente der Schweiz,Rechtsquellenstiftung des Schweizerischen Juristenvereins,histHub,Historisches Lexikon der Schweiz,Swissuniversities,Schweizerisches Idiotikon,Historisches Lexikon der Schweiz,histHub,Rechtsquellenstiftung des Schweizerischen Juristenvereins,Diplomatische Dokumente der Schweiz,Schweizerisches Idiotikon
re3data: r3d100012319 , r3d100012319
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- Data Repository Switzerland, United States Compatibility:Not yet registeredPartners:GAW, ARL, Quality Assurance/Science Activity Centre – Americas, ISWS, ISWS +5 partners Natural Sciences, Chemistry, Geosciences (including Geography)GAW,ARL,Quality Assurance/Science Activity Centre – Americas,ISWS,ISWS,Quality Assurance/Science Activity Centre – Americas,WMO,ARL,GAW,WMO
re3data: r3d100010098 , r3d100010098
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Switzerland Compatibility:OpenAIRE Basic (DRIVER OA)Partners:MSF, MSF Ecology and Environment, Health and MedicineMSF,MSFOAI-PMH URL: https://fieldresearch.msf.org/oai/request
This site provides access to the institutions research. Users may set up RSS feeds to be alerted to new content. The site interface is in English.
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re3data: r3d100012277 , r3d100012277
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For further information contact us at helpdesk@openaire.eu - Data Repository Austria Compatibility:Not yet registeredPartners:International Atomic Energy Agency, Nuclear Data Section, Atomic and Molecular Data Unit, International Atomic Energy Agency, Nuclear Data Section, Atomic and Molecular Data Unit Natural Sciences, Optics, Quantum Optics and Physics of Atoms, Molecules and Plasmas, PhysicsInternational Atomic Energy Agency, Nuclear Data Section, Atomic and Molecular Data Unit,International Atomic Energy Agency, Nuclear Data Section, Atomic and Molecular Data Unit
re3data: r3d100011415 , r3d100011415
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany, Switzerland Compatibility:Not yet registeredPartners:AdW, RISM Editorial Center, RISM Zentralredaktion, Swiss RISM Office, RISM Digital Center +6 partners Humanities and Social Sciences, Fine Arts, Music, Theatre and Media Studies, MusicologyAdW,RISM Editorial Center,RISM Zentralredaktion,Swiss RISM Office,RISM Digital Center,Berlin State Library,RISM Editorial Center,Staatsbibliothek zu Berlin - Preußischer Kulturbesitz,RISM Zentralredaktion,BSB,BSB
re3data: r3d100013190 , r3d100013190
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Alternative cleavage and polyadenylation (APA) of RNAs gives rise to isoforms with different terminal exons, which in turn determine the fate of the RNA and the encoded protein. APA has thus been implicated in the regulation of cell proliferation, differentiation and disease development. PolyASite is a portal to the curated set of poly(A) sites inferred from publicly available 3’ end sequencing datasets. It allows efficient finding, exploration and export of poly(A) sites in several organisms. In constructing our poly(A) site atlas, we applied uniform quality measures, including the flagging of putative internal priming sites, to input datasets originating from different 3’ end sequencing techniques, cell types or tissues. Through integrated processing of all data, we identified and clustered sites that are closely spaced and share polyadenylation signals, as these are likely the result of stochastic variations in processing. For each cluster, we identified the representative - most frequently processed - site and estimated the relative use in the transcriptome across all samples. While other existing alternative polyadenylation databases rely on a single experimental method, or on poly(A) site estimation from RNA-seq data, PolyASite is built on data from several 3’ end sequencing techniques. This allows a broader coverage of cell types and poly(A) sites to support further genomics studies.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository Austria Compatibility:OpenAIRE Basic (DRIVER OA)Partners:FH Campus Wien - University of Applied Sciences, FH Campus Wien - University of Applied SciencesFH Campus Wien - University of Applied Sciences,FH Campus Wien - University of Applied SciencesOAI-PMH URL: https://digital.obvsg.at/obvfcw/oai/
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For further information contact us at helpdesk@openaire.eu - Data Repository United States, Austria, France, Germany Compatibility:Not yet registeredPartners:NASA, TUW, Vienna University of Technology, Department of Geodesy and Geoinformation, OPAR, BKG +11 partners Natural Sciences, Geophysics and Geodesy, Geosciences (including Geography)NASA,TUW,Vienna University of Technology, Department of Geodesy and Geoinformation,OPAR,BKG,GSFC,Vienna University of Technology, Department of Geodesy and Geoinformation,IGG,Massachusetts Institute of Technology, Haystack Observatory,University of Bonn,NASA,Massachusetts Institute of Technology, Haystack Observatory,BKG,Paris Observatory,IGG,CDDIS
re3data: r3d100010531 , r3d100010531
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For further information contact us at helpdesk@openaire.eu - Data Repository Switzerland Compatibility:Not yet registeredPartners:Diplomatische Dokumente der Schweiz, Rechtsquellenstiftung des Schweizerischen Juristenvereins, histHub, Historisches Lexikon der Schweiz, Swissuniversities +6 partners Humanities and Social Sciences, History, LinguisticsDiplomatische Dokumente der Schweiz,Rechtsquellenstiftung des Schweizerischen Juristenvereins,histHub,Historisches Lexikon der Schweiz,Swissuniversities,Schweizerisches Idiotikon,Historisches Lexikon der Schweiz,histHub,Rechtsquellenstiftung des Schweizerischen Juristenvereins,Diplomatische Dokumente der Schweiz,Schweizerisches Idiotikon
re3data: r3d100012319 , r3d100012319
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