- FR
- EU
- CY
- Thematic: No
- FR
- EU
- CY
- Thematic: No
- Data Repository European Union Compatibility:Not yet registeredPartners:LifeWatch ERIC, LifeWatch ERIC Bioinformatics, Taxonomy, BiodiversityLifeWatch ERIC,LifeWatch ERIC
LW ERIC is the e-Science European Research Infrastructure for Biodiversity and Ecosystem Research. It provides access to a multitude of datasets, e-Services and tools enabling the construction and operation of Virtual Research Environments (VREs) through innovative technologies, which permit the accelerated capture of data, their analysis and knowledge-based decision-making support for biodiversity and ecosystem management. It can be split into 2 groups of services: BER_e-Infra & BER_VREs. BER_VREs consists of 3 cutting-edge technologies: LifeBlock, a Blockchain technology for transparency and immutability, guaranteeing FAIR-compliant data. Tesseract, the technical composability layer to integrate web services, enabling the development of VREs for users to combine and arrange services and software into multiple workflows. The Artificial Intelligence virtual laboratory (vLab), an online service allowing users to locate others working on similar subjects and the hubs that link them. Within BiCiKL, LW ERIC will support virtual access to BER_VREs.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:RECOLNAT, RECOLNAT Botany, Paleontology, BiodiversityRECOLNAT,RECOLNAT
e-ReColNat is an image repository consisting of species occurrence records through time, and aims to provide a source of data for additional research in areas such as biodiversity surveying, modelling global change.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:CNRS, Institut Pasteur Genomics, Life Science, Deoxyribonucleic acidCNRS,Institut Pasteur
PhotoList, contains a database dedicated to the analysis of the genome of Photorhabdus luminescens. This analysis has been described in: "The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens"
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:LMGM, CNRS Life Science, Nucleic acid sequence, SequenceLMGM,CNRS
This database provides a list of insertion sequences (IS) isolated from bacteria and archae. It is organized into individual files containing their general features (name, size, origin, family.....) as well as their DNA and potential protein sequences. Some of the entries have been identified as individual elements by their insertion activities but a growing number are included from their description in sequenced bacterial genomes. It also includes certain transposons, in particular, members of the Tn3 family of replicative transposons. Note from the FAIRsharing team: we have classified the status of the resource as 'uncertain' because we can't access the data, and we are making every effort to engage with the resource owners to understand if it is a temporary issue or if the resource is no longer active.
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For further information contact us at helpdesk@openaire.eu - Data Repository European Union, Romania, Sweden, Netherlands, Italy, France Compatibility:Not yet registeredPartners:IS-ENES, INHGA, INHGA, SMHI, KNMI +7 partners Earth Science, Climate, Modeling and simulationIS-ENES,INHGA,INHGA,SMHI,KNMI,CMCC,CERFACS,CMCC,CNRS,Mto France, Centre National de Recherches Mtorologiques, Paris, France,IS-ENES,WUR
re3data: r3d100012141 , r3d100012141
Climate4Impact is a portal for climate model data. It aims to support climate change impact modelers, impact and adaptation consultants, as well anyone else wanting to use climate change data. Climate4Impact offers access to data and visualizations of global climate models (GCM), regional climate models (RCM) and downscaled high resolution climate data. It provides data transformation tooling like indices calculations, downscaling, subsetting and regridding for tailoring data to your needs. Climate4impact is the result of a collaborative effort within the European FP-7 project Infrastructure for the European Network for Earth System Modelling (IS-ENES, IS-ENES2 , IS-ENES3)
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:DGESIP, DGRI, DGESIP, CINES, DGRI +1 partners Humanities and Social Sciences, Life Sciences, Natural SciencesDGESIP,DGRI,DGESIP,CINES,DGRI,CINES
re3data: r3d100010151 , r3d100010151
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For further information contact us at helpdesk@openaire.eu - Data Repository Italy, France, Germany Compatibility:Not yet registeredPartners:BioComputing laboratory, University of Padua, Italy, Structural Bioinformatics and Molecular Modelling Group, CRBM, France, BioComputing laboratory, University of Padua, Italy, Structural Bioinformatics and Molecular Modelling Group, CRBM, France, Institue of Molecular Biology, gGmbH, Mainz, Germany +1 partners Life Science, Protein, Tandem repeatBioComputing laboratory, University of Padua, Italy,Structural Bioinformatics and Molecular Modelling Group, CRBM, France,BioComputing laboratory, University of Padua, Italy,Structural Bioinformatics and Molecular Modelling Group, CRBM, France,Institue of Molecular Biology, gGmbH, Mainz, Germany,Institue of Molecular Biology, gGmbH, Mainz, Germany
RepeatsDB (https://repeatsdb.org/) is a database of annotated tandem repeat protein structures. Tandem repeats pose a difficult problem for the analysis of protein structures, as the underlying sequence can be highly degenerate. Several repeat types haven been studied over the years, but their annotation was done in a case-by-case basis, thus making large-scale analysis difficult. We developed RepeatsDB to fill this gap. Using state-of-the-art repeat detection methods and manual curation, we systematically annotated the Protein Data Bank, predicting 10 745 repeat structures. In all, 2797 structures were classified according to a recently proposed classification schema, which was expanded to accommodate new findings. In addition, detailed annotations were performed in a subset of 321 proteins. These annotations feature information on start and end positions for the repeat regions and units. RepeatsDB is an ongoing effort to systematically classify and annotate structural protein repeats in a consistent way. It provides users with the possibility to access and download high-quality datasets either interactively or programmatically through web services.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:URGI INRAE, URGI INRAE Plant Breeding, Genomics, AgricultureURGI INRAE,URGI INRAE
This Wheat Information System aims at building an International Wheat Information System, to support the wheat research community. The main objective is to provide a single-access web base system to access to the available data resources and bioinformatics tools.
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This site provides access to the research output of the institution. The interface is available in French and English.
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- Data Repository European Union Compatibility:Not yet registeredPartners:LifeWatch ERIC, LifeWatch ERIC Bioinformatics, Taxonomy, BiodiversityLifeWatch ERIC,LifeWatch ERIC
LW ERIC is the e-Science European Research Infrastructure for Biodiversity and Ecosystem Research. It provides access to a multitude of datasets, e-Services and tools enabling the construction and operation of Virtual Research Environments (VREs) through innovative technologies, which permit the accelerated capture of data, their analysis and knowledge-based decision-making support for biodiversity and ecosystem management. It can be split into 2 groups of services: BER_e-Infra & BER_VREs. BER_VREs consists of 3 cutting-edge technologies: LifeBlock, a Blockchain technology for transparency and immutability, guaranteeing FAIR-compliant data. Tesseract, the technical composability layer to integrate web services, enabling the development of VREs for users to combine and arrange services and software into multiple workflows. The Artificial Intelligence virtual laboratory (vLab), an online service allowing users to locate others working on similar subjects and the hubs that link them. Within BiCiKL, LW ERIC will support virtual access to BER_VREs.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:RECOLNAT, RECOLNAT Botany, Paleontology, BiodiversityRECOLNAT,RECOLNAT
e-ReColNat is an image repository consisting of species occurrence records through time, and aims to provide a source of data for additional research in areas such as biodiversity surveying, modelling global change.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:CNRS, Institut Pasteur Genomics, Life Science, Deoxyribonucleic acidCNRS,Institut Pasteur
PhotoList, contains a database dedicated to the analysis of the genome of Photorhabdus luminescens. This analysis has been described in: "The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens"
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:LMGM, CNRS Life Science, Nucleic acid sequence, SequenceLMGM,CNRS
This database provides a list of insertion sequences (IS) isolated from bacteria and archae. It is organized into individual files containing their general features (name, size, origin, family.....) as well as their DNA and potential protein sequences. Some of the entries have been identified as individual elements by their insertion activities but a growing number are included from their description in sequenced bacterial genomes. It also includes certain transposons, in particular, members of the Tn3 family of replicative transposons. Note from the FAIRsharing team: we have classified the status of the resource as 'uncertain' because we can't access the data, and we are making every effort to engage with the resource owners to understand if it is a temporary issue or if the resource is no longer active.
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For further information contact us at helpdesk@openaire.eu - Data Repository European Union, Romania, Sweden, Netherlands, Italy, France Compatibility:Not yet registeredPartners:IS-ENES, INHGA, INHGA, SMHI, KNMI +7 partners Earth Science, Climate, Modeling and simulationIS-ENES,INHGA,INHGA,SMHI,KNMI,CMCC,CERFACS,CMCC,CNRS,Mto France, Centre National de Recherches Mtorologiques, Paris, France,IS-ENES,WUR
re3data: r3d100012141 , r3d100012141
Climate4Impact is a portal for climate model data. It aims to support climate change impact modelers, impact and adaptation consultants, as well anyone else wanting to use climate change data. Climate4Impact offers access to data and visualizations of global climate models (GCM), regional climate models (RCM) and downscaled high resolution climate data. It provides data transformation tooling like indices calculations, downscaling, subsetting and regridding for tailoring data to your needs. Climate4impact is the result of a collaborative effort within the European FP-7 project Infrastructure for the European Network for Earth System Modelling (IS-ENES, IS-ENES2 , IS-ENES3)
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:DGESIP, DGRI, DGESIP, CINES, DGRI +1 partners Humanities and Social Sciences, Life Sciences, Natural SciencesDGESIP,DGRI,DGESIP,CINES,DGRI,CINES
re3data: r3d100010151 , r3d100010151
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For further information contact us at helpdesk@openaire.eu - Data Repository Italy, France, Germany Compatibility:Not yet registeredPartners:BioComputing laboratory, University of Padua, Italy, Structural Bioinformatics and Molecular Modelling Group, CRBM, France, BioComputing laboratory, University of Padua, Italy, Structural Bioinformatics and Molecular Modelling Group, CRBM, France, Institue of Molecular Biology, gGmbH, Mainz, Germany +1 partners Life Science, Protein, Tandem repeatBioComputing laboratory, University of Padua, Italy,Structural Bioinformatics and Molecular Modelling Group, CRBM, France,BioComputing laboratory, University of Padua, Italy,Structural Bioinformatics and Molecular Modelling Group, CRBM, France,Institue of Molecular Biology, gGmbH, Mainz, Germany,Institue of Molecular Biology, gGmbH, Mainz, Germany
RepeatsDB (https://repeatsdb.org/) is a database of annotated tandem repeat protein structures. Tandem repeats pose a difficult problem for the analysis of protein structures, as the underlying sequence can be highly degenerate. Several repeat types haven been studied over the years, but their annotation was done in a case-by-case basis, thus making large-scale analysis difficult. We developed RepeatsDB to fill this gap. Using state-of-the-art repeat detection methods and manual curation, we systematically annotated the Protein Data Bank, predicting 10 745 repeat structures. In all, 2797 structures were classified according to a recently proposed classification schema, which was expanded to accommodate new findings. In addition, detailed annotations were performed in a subset of 321 proteins. These annotations feature information on start and end positions for the repeat regions and units. RepeatsDB is an ongoing effort to systematically classify and annotate structural protein repeats in a consistent way. It provides users with the possibility to access and download high-quality datasets either interactively or programmatically through web services.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Compatibility:Not yet registeredPartners:URGI INRAE, URGI INRAE Plant Breeding, Genomics, AgricultureURGI INRAE,URGI INRAE
This Wheat Information System aims at building an International Wheat Information System, to support the wheat research community. The main objective is to provide a single-access web base system to access to the available data resources and bioinformatics tools.
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For further information contact us at helpdesk@openaire.eu - Institutional Repository France Compatibility:Not yet registeredPartners:CS, CS MultidisciplinaryCS,CS
This site provides access to the research output of the institution. The interface is available in French and English.
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