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- Data Repository
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- Data Repository Poland Compatibility:Not yet registeredPartners:Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland, Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland Life Science, RNA sequence, Ribonucleic acidBujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland,Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland
MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences, pathways of their biosynthesis and enzymes that carry out the respective reactions (together with their protein cofactors). Also included are the protein sequences, the structure data (if available), selected references from scientific literature, and links to other databases allowing to obtain comprehensive information about individual modified residues and proteins involved in their biosynthesis.
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark Compatibility:Not yet registeredPartners:Novo Nordisk Fonden, Technical University of Denmark, Department of Bio and Health Informatics, DTU Bioinformatics, Technical University of Denmark, Department of Bio and Health Informatics, DTU Bioinformatics, The Velux Foundations, DFF +3 partners Life Sciences, Basic Biological and Medical Research, Bioinformatics and Theoretical BiologyNovo Nordisk Fonden,Technical University of Denmark, Department of Bio and Health Informatics, DTU Bioinformatics,Technical University of Denmark, Department of Bio and Health Informatics, DTU Bioinformatics,The Velux Foundations,DFF,Danish e Infrastructure Cooperation,Novo Nordisk Fonden,DFF
re3data: r3d100010618 , r3d100010618
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For further information contact us at helpdesk@openaire.eu - Data Repository Czech Republic, Lithuania, Slovakia, Italy, Greece, Denmark, Hungary, Poland, Germany Compatibility:Not yet registeredPartners:CGS, ITG, GCX, GLD, MGL +15 partners Natural Sciences, Geosciences (including Geography), Geosciences (including Geography)CGS,ITG,GCX,GLD,MGL,ITSAK,SGIDŠ,GEUS,GCX,ELGI,MGL,ELGI,ITG,CGS,CGS,PGI,CGS,SGIDŠ,PGI,LIAG
re3data: r3d100010629 , r3d100010629
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark Compatibility:collected from a compatible aggregatorPartners:GBIF, GBIF Biology, Agriculture, Forestry, Horticulture and Veterinary Medicine, Life SciencesGBIF,GBIF
re3data: r3d100000039
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark, Australia Compatibility:Not yet registeredPartners:RTH, CPR, RTH, CSIRO, CPR Bioinformatics, Proteomics, TranscriptomicsRTH,CPR,RTH,CSIRO,CPR
TISSUES is a weekly updated web resource that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. All evidence to common protein identifiers and Brenda Tissue Ontology terms is mapped, and confidence scores that facilitate comparison of the different types and sources of evidence are assigned. These scores are visualized on a schematic human body to provide a convenient overview.
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark Compatibility:Not yet registeredPartners:GEUS Hydrogeology, Geophysics, Earth ScienceGEUS
re3data: r3d100011484 , r3d100011484
GERDA is the national geophysical database for Denmark. It contains geophysical data, primarily collected during the mapping of areas of special drinking water interests and the national groundwater mapping. It also contains the logging data collected by the Geological Survey of Denmark and Greenland (GEUS) and consulting engineering companies from exploration and water-supply wells.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany, Czech Republic, Poland Compatibility:Not yet registeredPartners:Archaeolinguistic Research Group, Max Planck Institute for the Science of Human History, MU, MPCDF, MPCDF +3 partners Humanities and Social Sciences, Ancient Cultures, HistoryArchaeolinguistic Research Group,Max Planck Institute for the Science of Human History,MU,MPCDF,MPCDF,MPDL,UW,Archaeolinguistic Research Group
re3data: r3d100013698 , r3d100013698
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark, Germany, France Compatibility:Not yet registeredPartners:DTU, GFZ, ICSU, ICSU WDS, DTU Natural Sciences, Astrophysics and Astronomy, Geophysics and GeodesyDTU,GFZ,ICSU,ICSU WDS,DTU
re3data: r3d100010301 , r3d100010301
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For further information contact us at helpdesk@openaire.eu - Data Repository Australia, Denmark Compatibility:Not yet registeredPartners:ALA, GBIF, ALA, GBIF Biodiversity, Life Science, Taxonomic classificationALA,GBIF,ALA,GBIF
The Atlas of Living Australia (GBIF Australia) maintains this data repository in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Able to assign DOIs to datasets, it ensures the data is disseminated in standardized format in order to facilitate wider reuse and integration of the data, for example into GBIF.org. GBIF Australia supports researchers in Australia by providing them helpdesk assistance and by hosting their data for free in this repository.
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re3data: r3d100010604 , r3d100010604
STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations.
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- Data Repository Poland Compatibility:Not yet registeredPartners:Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland, Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland Life Science, RNA sequence, Ribonucleic acidBujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland,Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB), Warsaw, Poland
MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences, pathways of their biosynthesis and enzymes that carry out the respective reactions (together with their protein cofactors). Also included are the protein sequences, the structure data (if available), selected references from scientific literature, and links to other databases allowing to obtain comprehensive information about individual modified residues and proteins involved in their biosynthesis.
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark Compatibility:Not yet registeredPartners:Novo Nordisk Fonden, Technical University of Denmark, Department of Bio and Health Informatics, DTU Bioinformatics, Technical University of Denmark, Department of Bio and Health Informatics, DTU Bioinformatics, The Velux Foundations, DFF +3 partners Life Sciences, Basic Biological and Medical Research, Bioinformatics and Theoretical BiologyNovo Nordisk Fonden,Technical University of Denmark, Department of Bio and Health Informatics, DTU Bioinformatics,Technical University of Denmark, Department of Bio and Health Informatics, DTU Bioinformatics,The Velux Foundations,DFF,Danish e Infrastructure Cooperation,Novo Nordisk Fonden,DFF
re3data: r3d100010618 , r3d100010618
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For further information contact us at helpdesk@openaire.eu - Data Repository Czech Republic, Lithuania, Slovakia, Italy, Greece, Denmark, Hungary, Poland, Germany Compatibility:Not yet registeredPartners:CGS, ITG, GCX, GLD, MGL +15 partners Natural Sciences, Geosciences (including Geography), Geosciences (including Geography)CGS,ITG,GCX,GLD,MGL,ITSAK,SGIDŠ,GEUS,GCX,ELGI,MGL,ELGI,ITG,CGS,CGS,PGI,CGS,SGIDŠ,PGI,LIAG
re3data: r3d100010629 , r3d100010629
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark Compatibility:collected from a compatible aggregatorPartners:GBIF, GBIF Biology, Agriculture, Forestry, Horticulture and Veterinary Medicine, Life SciencesGBIF,GBIF
re3data: r3d100000039
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark, Australia Compatibility:Not yet registeredPartners:RTH, CPR, RTH, CSIRO, CPR Bioinformatics, Proteomics, TranscriptomicsRTH,CPR,RTH,CSIRO,CPR
TISSUES is a weekly updated web resource that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. All evidence to common protein identifiers and Brenda Tissue Ontology terms is mapped, and confidence scores that facilitate comparison of the different types and sources of evidence are assigned. These scores are visualized on a schematic human body to provide a convenient overview.
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark Compatibility:Not yet registeredPartners:GEUS Hydrogeology, Geophysics, Earth ScienceGEUS
re3data: r3d100011484 , r3d100011484
GERDA is the national geophysical database for Denmark. It contains geophysical data, primarily collected during the mapping of areas of special drinking water interests and the national groundwater mapping. It also contains the logging data collected by the Geological Survey of Denmark and Greenland (GEUS) and consulting engineering companies from exploration and water-supply wells.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany, Czech Republic, Poland Compatibility:Not yet registeredPartners:Archaeolinguistic Research Group, Max Planck Institute for the Science of Human History, MU, MPCDF, MPCDF +3 partners Humanities and Social Sciences, Ancient Cultures, HistoryArchaeolinguistic Research Group,Max Planck Institute for the Science of Human History,MU,MPCDF,MPCDF,MPDL,UW,Archaeolinguistic Research Group
re3data: r3d100013698 , r3d100013698
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For further information contact us at helpdesk@openaire.eu - Data Repository Denmark, Germany, France Compatibility:Not yet registeredPartners:DTU, GFZ, ICSU, ICSU WDS, DTU Natural Sciences, Astrophysics and Astronomy, Geophysics and GeodesyDTU,GFZ,ICSU,ICSU WDS,DTU
re3data: r3d100010301 , r3d100010301
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For further information contact us at helpdesk@openaire.eu - Data Repository Australia, Denmark Compatibility:Not yet registeredPartners:ALA, GBIF, ALA, GBIF Biodiversity, Life Science, Taxonomic classificationALA,GBIF,ALA,GBIF
The Atlas of Living Australia (GBIF Australia) maintains this data repository in collaboration with the GBIF Secretariat, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Able to assign DOIs to datasets, it ensures the data is disseminated in standardized format in order to facilitate wider reuse and integration of the data, for example into GBIF.org. GBIF Australia supports researchers in Australia by providing them helpdesk assistance and by hosting their data for free in this repository.
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany, Switzerland, Denmark Compatibility:Not yet registeredPartners:EMBL, UZH, CPR, CPR, SIB Life Science, Biology, Computational biological predictionsEMBL,UZH,CPR,CPR,SIB
re3data: r3d100010604 , r3d100010604
STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations.
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