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- Data Repository United Kingdom Compatibility:Not yet registeredPartners:The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK Life Science, Sequence, GeneThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK
re3data: r3d100012575 , r3d100012575
Website URL: https://vega.archive.ensembl.org/index.htmlThe Vertebrate Genome Annotation (VEGA) database is a central repository for high quality manual annotation of vertebrate finished genome sequence.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Centre for Cell Imaging, Institute of Integrative Biology, University of Liverpool, Liverpool, UK, Centre for Cell Imaging, Institute of Integrative Biology, University of Liverpool, Liverpool, UK Life Science, BioimagingCentre for Cell Imaging, Institute of Integrative Biology, University of Liverpool, Liverpool, UK,Centre for Cell Imaging, Institute of Integrative Biology, University of Liverpool, Liverpool, UKWebsite URL: http://cci02.liv.ac.uk/gallery/
A repository of image / SPM data to support users of the Centre for Cell Imaging, University of Liverpool.
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For further information contact us at helpdesk@openaire.eu - Data Repository Czech Republic, European Union Compatibility:Not yet registeredPartners:CEITEC , CEITEC Life Science, Protein structure, LigandCEITEC ,CEITECWebsite URL: http://webchem.ncbr.muni.cz/Platform/ValidatorDB
ValidatorDB is a collection of validation results for the entire Protein Data Bank. Annotation (3-letter code) of HET residues larger than 6 heavy atoms is inspected, i.e. if the residue has the same topology and stereochemistry as the model ligand or residue stored in the wwCCD. Validation reports for the entire database can be inspected as well as for the arbitrary set of PDB entries or PDB annotations (3-letter residue code). Results are available in graphical form via Web UI and can be downloaded in the form of CSV files for further inspection.
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For further information contact us at helpdesk@openaire.eu - Data Repository Australia, United Kingdom Compatibility:Not yet registeredPartners:Atlassian, Sydney, Australia, Atlassian (United Kingdom) Knowledge and Information Systems, Subject Agnostic, Software EngineeringAtlassian, Sydney, Australia,Atlassian (United Kingdom)
re3data: r3d100013478 , r3d100013478
Website URL: https://bitbucket.org/Bitbucket is a Git-based source code repository hosting service owned by Atlassian. It provides a number of different access levels, from free through to premium paid services. Users can create public or private repositories, the latter of which is restricted to 5 users under the free plan.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Department of Computer Science, University of Bristol, UK, Department of Computer Science, University of Bristol, UK Bioinformatics, Functional domain, Protein domainDepartment of Computer Science, University of Bristol, UK,Department of Computer Science, University of Bristol, UKWebsite URL: http://supfam.org/SUPERFAMILY/dcGO/index.html
Domain-centric GO provides associations between ontological terms and protein domains at the superfamily and family levels. Some functional units consist of more than one domain acting together or acting at an interface between domains; therefore, ontological terms associated with pairs of domains, triplets and longer supra-domains are also provided.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom, Austria Compatibility:Not yet registeredPartners:UKCEH, UKCEH, eLTER, eLTER Environmental Science, Ecology, Ecosystem ScienceUKCEH,UKCEH,eLTER,eLTER
re3data: r3d100012910 , r3d100012910
Website URL: https://deims.orgDEIMS-SDR (Dynamic Ecological Information Management System - Site and Dataset Registry) is an information management system for the discovery of long-term environmental research and monitoring facilities around the globe, along with the data gathered at those sites and the people and networks associated with them. DEIMS-SDR includes metadata such as site location, ecosystem, facilities, parameters measured and research themes.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK Life Science, Pathogen, SequenceThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK
re3data: r3d100010626 , r3d100010626
Website URL: http://www.genedb.org/GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.
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For further information contact us at helpdesk@openaire.eu - Data Repository European Union Compatibility:Not yet registeredPartners:ACTRIS, ACTRIS, ACTRIS, ACTRIS Environmental Science, Atmospheric Science, ValidationACTRIS,ACTRIS,ACTRIS,ACTRIS
re3data: r3d100014413
The ARES data centre unit provides data curation and data processing service for aerosol remote sensing data coming from lidar and photometer observations. ARES collaborates closely with the ACTRIS Centre for Aerosol Remote Sensing (CARS). Major objectives also include the development and validation of new synergetic remote sensing algorithms, and the continuous evaluation of the representation of clouds and other atmospheric parameters in climate and weather forecast models.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Lancaster University Data Management, Subject AgnosticLancaster University
Lancaster University's Institutional Data Repository contains datasets published internally by researchers at Lancaster University. It also contains a partial registry of externally published datasets by dataset creators affiliated with the institution. Datasets are available in 3 methods of access: 1. Open 2. Restricted where data is available on request to rdm@lancaster.ac.uk 3. Closed or Metadata records only
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK, Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK Genomics, Biology, Expression dataCambridge Systems Biology Centre, University of Cambridge, Cambridge, UK,Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UKWebsite URL: https://www.flymine.org
FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Its main focus is genomic and proteomics data for Drosophila and other insects. It provides access to integrated data at a number of different levels, from browsing to construction of complex queries, which can be executed on either single items or lists.
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- Data Repository United Kingdom Compatibility:Not yet registeredPartners:The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK Life Science, Sequence, GeneThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK
re3data: r3d100012575 , r3d100012575
Website URL: https://vega.archive.ensembl.org/index.htmlThe Vertebrate Genome Annotation (VEGA) database is a central repository for high quality manual annotation of vertebrate finished genome sequence.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Centre for Cell Imaging, Institute of Integrative Biology, University of Liverpool, Liverpool, UK, Centre for Cell Imaging, Institute of Integrative Biology, University of Liverpool, Liverpool, UK Life Science, BioimagingCentre for Cell Imaging, Institute of Integrative Biology, University of Liverpool, Liverpool, UK,Centre for Cell Imaging, Institute of Integrative Biology, University of Liverpool, Liverpool, UKWebsite URL: http://cci02.liv.ac.uk/gallery/
A repository of image / SPM data to support users of the Centre for Cell Imaging, University of Liverpool.
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For further information contact us at helpdesk@openaire.eu - Data Repository Czech Republic, European Union Compatibility:Not yet registeredPartners:CEITEC , CEITEC Life Science, Protein structure, LigandCEITEC ,CEITECWebsite URL: http://webchem.ncbr.muni.cz/Platform/ValidatorDB
ValidatorDB is a collection of validation results for the entire Protein Data Bank. Annotation (3-letter code) of HET residues larger than 6 heavy atoms is inspected, i.e. if the residue has the same topology and stereochemistry as the model ligand or residue stored in the wwCCD. Validation reports for the entire database can be inspected as well as for the arbitrary set of PDB entries or PDB annotations (3-letter residue code). Results are available in graphical form via Web UI and can be downloaded in the form of CSV files for further inspection.
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For further information contact us at helpdesk@openaire.eu - Data Repository Australia, United Kingdom Compatibility:Not yet registeredPartners:Atlassian, Sydney, Australia, Atlassian (United Kingdom) Knowledge and Information Systems, Subject Agnostic, Software EngineeringAtlassian, Sydney, Australia,Atlassian (United Kingdom)
re3data: r3d100013478 , r3d100013478
Website URL: https://bitbucket.org/Bitbucket is a Git-based source code repository hosting service owned by Atlassian. It provides a number of different access levels, from free through to premium paid services. Users can create public or private repositories, the latter of which is restricted to 5 users under the free plan.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Department of Computer Science, University of Bristol, UK, Department of Computer Science, University of Bristol, UK Bioinformatics, Functional domain, Protein domainDepartment of Computer Science, University of Bristol, UK,Department of Computer Science, University of Bristol, UKWebsite URL: http://supfam.org/SUPERFAMILY/dcGO/index.html
Domain-centric GO provides associations between ontological terms and protein domains at the superfamily and family levels. Some functional units consist of more than one domain acting together or acting at an interface between domains; therefore, ontological terms associated with pairs of domains, triplets and longer supra-domains are also provided.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom, Austria Compatibility:Not yet registeredPartners:UKCEH, UKCEH, eLTER, eLTER Environmental Science, Ecology, Ecosystem ScienceUKCEH,UKCEH,eLTER,eLTER
re3data: r3d100012910 , r3d100012910
Website URL: https://deims.orgDEIMS-SDR (Dynamic Ecological Information Management System - Site and Dataset Registry) is an information management system for the discovery of long-term environmental research and monitoring facilities around the globe, along with the data gathered at those sites and the people and networks associated with them. DEIMS-SDR includes metadata such as site location, ecosystem, facilities, parameters measured and research themes.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK Life Science, Pathogen, SequenceThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK
re3data: r3d100010626 , r3d100010626
Website URL: http://www.genedb.org/GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.
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For further information contact us at helpdesk@openaire.eu - Data Repository European Union Compatibility:Not yet registeredPartners:ACTRIS, ACTRIS, ACTRIS, ACTRIS Environmental Science, Atmospheric Science, ValidationACTRIS,ACTRIS,ACTRIS,ACTRIS
re3data: r3d100014413
The ARES data centre unit provides data curation and data processing service for aerosol remote sensing data coming from lidar and photometer observations. ARES collaborates closely with the ACTRIS Centre for Aerosol Remote Sensing (CARS). Major objectives also include the development and validation of new synergetic remote sensing algorithms, and the continuous evaluation of the representation of clouds and other atmospheric parameters in climate and weather forecast models.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Lancaster University Data Management, Subject AgnosticLancaster University
Lancaster University's Institutional Data Repository contains datasets published internally by researchers at Lancaster University. It also contains a partial registry of externally published datasets by dataset creators affiliated with the institution. Datasets are available in 3 methods of access: 1. Open 2. Restricted where data is available on request to rdm@lancaster.ac.uk 3. Closed or Metadata records only
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK, Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK Genomics, Biology, Expression dataCambridge Systems Biology Centre, University of Cambridge, Cambridge, UK,Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UKWebsite URL: https://www.flymine.org
FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Its main focus is genomic and proteomics data for Drosophila and other insects. It provides access to integrated data at a number of different levels, from browsing to construction of complex queries, which can be executed on either single items or lists.
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