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1,183 Data sources

  • SeaWiFS Bio-optical Archive and Storage System (SeaBASS) is a publicly shared archive of in situ oceanographic and atmospheric data maintained by the NASA Ocean Biology Processing Group (OBPG). Archived data include measurements of apparent and inherent optical properties, phytoplankton pigment concentrations, and other related oceanographic and atmospheric data, such as water temperature, salinity, stimulated fluorescence, and aerosol optical thickness. Data are collected using a number of different instrument packages, such as profilers, buoys, and hand-held instruments, and manufacturers on a variety of platforms, including ships and moorings.

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  • The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans. BioGRID currently holds over 1,740,000 interactions curated from both high-throughput datasets and individual focused studies, as derived from over 70,000+ publications in the primary literature. Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway. All data are freely provided via our search index and available for download in many standardized formats.

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  • Princeton Data Commons is a multidisciplinary digital repository offering expert curation services and designed to archive and publicly disseminate data and code that are the result of research activities by Princeton University's research community.

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  • the HMS LINCS Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols. The HMS LINCS website also provides additional resources for many datasets.

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  • NOAA’s Center for Operational Oceanographic Products and Services (CO-OPS) provides accurate, reliable, and timely tides, water levels, currents, and other coastal oceanographic and meteorological information. CO-OPs supports safe and efficient maritime commerce and transportation, help protect public health and safety, and promote robust, resilient coastal communities. CO-OPS maintains ocean observing infrastructure, including more than 200 permanent water level stations on the U.S. coasts and Great Lakes, an integrated system of real-time sensors concentrated in busy seaports, and temporary meters that collect observations for tidal current predictions. Through these systems, they provide historic and real-time data, forecasts, predictions, and scientific analyses that protect life, the economy, and the environment on the coast.

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  • HITRAN is an acronym for high-resolution transmission molecular absorption database. HITRAN is a compilation of spectroscopic parameters that a variety of computer codes use to predict and simulate the transmission and emission of light in the atmosphere. HITRAN data is predominantly used in atmospheric science and astrophysics, but it has many applications throughout science, industry, and technology.

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  • EMBER is the BRAIN Initiative data archive for multi-modal neurophysiological and behavioral data, supporting the NIH Brain Behavior Quantification and Synchronization (BBQS) Program.

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  • BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. Its goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.

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  • BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory organizations around the world with open access to BRCA Share (formerly UMD-BRCA1) contains BRCA1 and BRCA2 genetic data. The program’s goal is to accelerate research on BRCA gene mutations, particularly variants of uncertain significance, to improve the ability of clinical laboratory diagnostics to predict which individuals are at risk of developing these cancers.

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  • SILVA is a comprehensive, quality-controlled web resource for up-to-date aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains alongside supplementary online services. In addition to data products, SILVA provides various online tools such as alignment and classification, phylogenetic tree calculation and viewer, probe/primer matching, and an amplicon analysis pipeline. With every full release a curated guide tree is provided that contains the latest taxonomy and nomenclature based on multiple references. The SILVA curation team is now part of Bergey’s Trustees and the Protist Reference Taxonomy Project UniEuk, which will further improve the quality of SILVA taxonomy. In order to cope with the dramatic expansion of bacterial and archaeal phyla, we have also teamed up with phylogenomic taxonomy efforts (i.e. Genome Taxonomy Database). SILVA is an ELIXIR Core Data Resource.

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1,183 Data sources
  • SeaWiFS Bio-optical Archive and Storage System (SeaBASS) is a publicly shared archive of in situ oceanographic and atmospheric data maintained by the NASA Ocean Biology Processing Group (OBPG). Archived data include measurements of apparent and inherent optical properties, phytoplankton pigment concentrations, and other related oceanographic and atmospheric data, such as water temperature, salinity, stimulated fluorescence, and aerosol optical thickness. Data are collected using a number of different instrument packages, such as profilers, buoys, and hand-held instruments, and manufacturers on a variety of platforms, including ships and moorings.

    more_vert
  • The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans. BioGRID currently holds over 1,740,000 interactions curated from both high-throughput datasets and individual focused studies, as derived from over 70,000+ publications in the primary literature. Complete coverage of the entire literature is maintained for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana), and efforts to expand curation across multiple metazoan species are underway. All data are freely provided via our search index and available for download in many standardized formats.

    more_vert
  • Princeton Data Commons is a multidisciplinary digital repository offering expert curation services and designed to archive and publicly disseminate data and code that are the result of research activities by Princeton University's research community.

    more_vert
  • the HMS LINCS Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols. The HMS LINCS website also provides additional resources for many datasets.

    more_vert
  • NOAA’s Center for Operational Oceanographic Products and Services (CO-OPS) provides accurate, reliable, and timely tides, water levels, currents, and other coastal oceanographic and meteorological information. CO-OPs supports safe and efficient maritime commerce and transportation, help protect public health and safety, and promote robust, resilient coastal communities. CO-OPS maintains ocean observing infrastructure, including more than 200 permanent water level stations on the U.S. coasts and Great Lakes, an integrated system of real-time sensors concentrated in busy seaports, and temporary meters that collect observations for tidal current predictions. Through these systems, they provide historic and real-time data, forecasts, predictions, and scientific analyses that protect life, the economy, and the environment on the coast.

    more_vert
  • HITRAN is an acronym for high-resolution transmission molecular absorption database. HITRAN is a compilation of spectroscopic parameters that a variety of computer codes use to predict and simulate the transmission and emission of light in the atmosphere. HITRAN data is predominantly used in atmospheric science and astrophysics, but it has many applications throughout science, industry, and technology.

    more_vert
  • EMBER is the BRAIN Initiative data archive for multi-modal neurophysiological and behavioral data, supporting the NIH Brain Behavior Quantification and Synchronization (BBQS) Program.

    more_vert
  • BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. Its goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.

    more_vert
  • BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory organizations around the world with open access to BRCA Share (formerly UMD-BRCA1) contains BRCA1 and BRCA2 genetic data. The program’s goal is to accelerate research on BRCA gene mutations, particularly variants of uncertain significance, to improve the ability of clinical laboratory diagnostics to predict which individuals are at risk of developing these cancers.

    more_vert
  • SILVA is a comprehensive, quality-controlled web resource for up-to-date aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains alongside supplementary online services. In addition to data products, SILVA provides various online tools such as alignment and classification, phylogenetic tree calculation and viewer, probe/primer matching, and an amplicon analysis pipeline. With every full release a curated guide tree is provided that contains the latest taxonomy and nomenclature based on multiple references. The SILVA curation team is now part of Bergey’s Trustees and the Protist Reference Taxonomy Project UniEuk, which will further improve the quality of SILVA taxonomy. In order to cope with the dramatic expansion of bacterial and archaeal phyla, we have also teamed up with phylogenomic taxonomy efforts (i.e. Genome Taxonomy Database). SILVA is an ELIXIR Core Data Resource.

    more_vert
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