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- Data Repository United States Compatibility:Not yet registeredPartners:BTI, BTI, Bioinformatics Research Group, SRI International, Menlo Park, California, United States, Bioinformatics Research Group, SRI International, Menlo Park, California, United States Genomics, Systems Biology, Reaction dataBTI,BTI,Bioinformatics Research Group, SRI International, Menlo Park, California, United States,Bioinformatics Research Group, SRI International, Menlo Park, California, United StatesWebsite URL: https://yeast.biocyc.org/
YeastCyc is a Pathway/Genome Database of the model eukaryote Saccharomyces cerevisiae S288c. In addition to genomic information, the database contains metabolic pathway, reaction, enzyme, and compound information, which has been manually curated from the scientific literature.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:University of Minnesota, Minneapolis, MN 55455, USA, TSRI, George A. Hormel & Company, TSRI, George A. Hormel & Company +1 partners Virology, Epidemiology, Molecular structureUniversity of Minnesota, Minneapolis, MN 55455, USA,TSRI,George A. Hormel & Company,TSRI,George A. Hormel & Company,University of Michigan–Flint
re3data: r3d100012362 , r3d100012362
Website URL: https://viperdb.org/VIPERdb is a database for icosahedral virus capsid structures. The emphasis is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:NCBI, NCBI Genomics, Metatranscriptomics, Life ScienceNCBI,NCBI
re3data: r3d100013330 , r3d100013330
Website URL: https://www.ncbi.nlm.nih.gov/bioproject/A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project. The BioProject database is a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms.
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For further information contact us at helpdesk@openaire.eu - Data Repository India, United States Compatibility:Not yet registeredPartners:Zamorin's Guruvayurappan College, ASU, AAMU, University of Minnesota, Minneapolis, MN 55455, USA, Department of Biological Sciences, Louisiana State University +2 partners Biochemistry, Structural Biology, PhylogenyZamorin's Guruvayurappan College,ASU,AAMU,University of Minnesota, Minneapolis, MN 55455, USA,Department of Biological Sciences, Louisiana State University,Zamorin's Guruvayurappan College,Department of Biological Sciences Stanford UniversityWebsite URL: http://aftol.umn.edu/
The AFTOL Structural and Biochemical Database features subcellular and biochemical data compiled from published literature and current research-in-progress on subcellular traits of Fungi. It was created for researchers to compile fungal subcellular and biochemical characters and character state data for phylogenetic analyses, including tree and ancestral state reconstructions.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA, UCSC, The Lowe Lab, Biomolecular Engineering, UCSC, Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA, The Lowe Lab, Biomolecular Engineering, UCSC Life Science, GC content, Genome mapDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA,UCSC,The Lowe Lab, Biomolecular Engineering, UCSC,Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA,The Lowe Lab, Biomolecular Engineering, UCSCWebsite URL: http://archaea.ucsc.edu
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:BGS, BGS Environmental Science, Geology, GeophysicsBGS,BGS
re3data: r3d100010189 , r3d100010189
Website URL: http://www.bgs.ac.uk/services/ngdc/home.htmlThe National Geoscience Data Centre (NGDC) collects and preserves geoscientific data and information, making them available to a wide range of users and communities. NGDC is recognised as the NERC Environmental Data Centre for geoscience data.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:LSHTM, University Of London, UK Health Science, Humanities and Social Science, MicrobiologyLSHTM,University Of London, UK
re3data: r3d100011800
Website URL: https://datacompass.lshtm.ac.uk/LSHTM Data Compass is a curated digital repository of research outputs produced with involvement by staff and students at the London School of Hygiene & Tropical Medicine, MRC Unit The Gambia, and/or the MRC/UVRI & LSHTM Uganda Research Unit. It hosts digital resources that are useful to verify and reproduce research findings, including: qualitative data, quantitative data, software code, processing scripts, search strategies, research instruments, and other outputs
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Cvergenx (United States), Alector (United States), University of Arizona, United States Life Science, Subject Agnostic, Experimental measurementCvergenx (United States),Alector (United States),University of Arizona, United StatesWebsite URL: http://datacommons.cyverse.org/
The Data Commons provides services to manage, organize, preserve, publish, discover, and reuse data. Using our pipelines, you can easily publish data to the NCBI or directly to the CyVerse Data Commons. CyVerse Curated Data are stable and have DOIs. Community Released Data are maintained by community members and may not be permanent.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:JHU Health Science, Life Science, Biomedical ScienceJHU
re3data: r3d100012849 , r3d100012849
Website URL: https://www.cvrgrid.org/The CardioVascular Research Grid (CVRG) project is creating an infrastructure for sharing cardiovascular data and data analysis tools. CVRG tools are developed using the Software as a Service model, allowing users to access tools through their browser, thus eliminating the need to install and maintain complex software.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Department of Genetics, Stanford University, USA, Department of Genetics, Stanford University, USA Life Science, DNA sequence data, NucleotideDepartment of Genetics, Stanford University, USA,Department of Genetics, Stanford University, USA
re3data: r3d100010617 , r3d100010617
Website URL: http://www.candidagenome.org/The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.
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For further information contact us at helpdesk@openaire.eu
- Data Repository United States Compatibility:Not yet registeredPartners:BTI, BTI, Bioinformatics Research Group, SRI International, Menlo Park, California, United States, Bioinformatics Research Group, SRI International, Menlo Park, California, United States Genomics, Systems Biology, Reaction dataBTI,BTI,Bioinformatics Research Group, SRI International, Menlo Park, California, United States,Bioinformatics Research Group, SRI International, Menlo Park, California, United StatesWebsite URL: https://yeast.biocyc.org/
YeastCyc is a Pathway/Genome Database of the model eukaryote Saccharomyces cerevisiae S288c. In addition to genomic information, the database contains metabolic pathway, reaction, enzyme, and compound information, which has been manually curated from the scientific literature.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:University of Minnesota, Minneapolis, MN 55455, USA, TSRI, George A. Hormel & Company, TSRI, George A. Hormel & Company +1 partners Virology, Epidemiology, Molecular structureUniversity of Minnesota, Minneapolis, MN 55455, USA,TSRI,George A. Hormel & Company,TSRI,George A. Hormel & Company,University of Michigan–Flint
re3data: r3d100012362 , r3d100012362
Website URL: https://viperdb.org/VIPERdb is a database for icosahedral virus capsid structures. The emphasis is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:NCBI, NCBI Genomics, Metatranscriptomics, Life ScienceNCBI,NCBI
re3data: r3d100013330 , r3d100013330
Website URL: https://www.ncbi.nlm.nih.gov/bioproject/A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project. The BioProject database is a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms.
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For further information contact us at helpdesk@openaire.eu - Data Repository India, United States Compatibility:Not yet registeredPartners:Zamorin's Guruvayurappan College, ASU, AAMU, University of Minnesota, Minneapolis, MN 55455, USA, Department of Biological Sciences, Louisiana State University +2 partners Biochemistry, Structural Biology, PhylogenyZamorin's Guruvayurappan College,ASU,AAMU,University of Minnesota, Minneapolis, MN 55455, USA,Department of Biological Sciences, Louisiana State University,Zamorin's Guruvayurappan College,Department of Biological Sciences Stanford UniversityWebsite URL: http://aftol.umn.edu/
The AFTOL Structural and Biochemical Database features subcellular and biochemical data compiled from published literature and current research-in-progress on subcellular traits of Fungi. It was created for researchers to compile fungal subcellular and biochemical characters and character state data for phylogenetic analyses, including tree and ancestral state reconstructions.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA, UCSC, The Lowe Lab, Biomolecular Engineering, UCSC, Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA, The Lowe Lab, Biomolecular Engineering, UCSC Life Science, GC content, Genome mapDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA,UCSC,The Lowe Lab, Biomolecular Engineering, UCSC,Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA,The Lowe Lab, Biomolecular Engineering, UCSCWebsite URL: http://archaea.ucsc.edu
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from the domain Archaea. Basic gene annotation is derived from NCBI Genbank/RefSeq entries, with overlays of sequence conservation across multiple species, nucleotide and protein motifs, non-coding RNA predictions, operon predictions, and other types of bioinformatic analyses. In addition, we display available gene expression data (microarray or high-throughput RNA sequencing). Direct contributions or notices of publication of functional genomic data or bioinformatic analyses from archaeal research labs are very welcome.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:BGS, BGS Environmental Science, Geology, GeophysicsBGS,BGS
re3data: r3d100010189 , r3d100010189
Website URL: http://www.bgs.ac.uk/services/ngdc/home.htmlThe National Geoscience Data Centre (NGDC) collects and preserves geoscientific data and information, making them available to a wide range of users and communities. NGDC is recognised as the NERC Environmental Data Centre for geoscience data.
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:LSHTM, University Of London, UK Health Science, Humanities and Social Science, MicrobiologyLSHTM,University Of London, UK
re3data: r3d100011800
Website URL: https://datacompass.lshtm.ac.uk/LSHTM Data Compass is a curated digital repository of research outputs produced with involvement by staff and students at the London School of Hygiene & Tropical Medicine, MRC Unit The Gambia, and/or the MRC/UVRI & LSHTM Uganda Research Unit. It hosts digital resources that are useful to verify and reproduce research findings, including: qualitative data, quantitative data, software code, processing scripts, search strategies, research instruments, and other outputs
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Cvergenx (United States), Alector (United States), University of Arizona, United States Life Science, Subject Agnostic, Experimental measurementCvergenx (United States),Alector (United States),University of Arizona, United StatesWebsite URL: http://datacommons.cyverse.org/
The Data Commons provides services to manage, organize, preserve, publish, discover, and reuse data. Using our pipelines, you can easily publish data to the NCBI or directly to the CyVerse Data Commons. CyVerse Curated Data are stable and have DOIs. Community Released Data are maintained by community members and may not be permanent.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:JHU Health Science, Life Science, Biomedical ScienceJHU
re3data: r3d100012849 , r3d100012849
Website URL: https://www.cvrgrid.org/The CardioVascular Research Grid (CVRG) project is creating an infrastructure for sharing cardiovascular data and data analysis tools. CVRG tools are developed using the Software as a Service model, allowing users to access tools through their browser, thus eliminating the need to install and maintain complex software.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:Department of Genetics, Stanford University, USA, Department of Genetics, Stanford University, USA Life Science, DNA sequence data, NucleotideDepartment of Genetics, Stanford University, USA,Department of Genetics, Stanford University, USA
re3data: r3d100010617 , r3d100010617
Website URL: http://www.candidagenome.org/The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.
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