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- Data Repository United States Compatibility:Not yet registeredPartners:BIDMC, BIDMC, LCP, MIT, LCP, MIT Physiology, Biomedical Science, EpilepsyBIDMC,BIDMC,LCP, MIT,LCP, MIT
re3data: r3d100011561
Website URL: https://www.physionet.org/The PhysioNet Resource is intended to stimulate current research and new investigations in the study of complex biomedical and physiologic signals. It offers free web access to large collections of recorded physiologic signals and related open-source software. Data includes well-characterized digital recordings of physiologic signals, time series, and related data for use by the biomedical research community. PhysioNet includes collections of cardiopulmonary, neural, and other biomedical signals from healthy subjects and patients with a variety of conditions with major public health implications, including sudden cardiac death, congestive heart failure, epilepsy, gait disorders, sleep apnea, and aging.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:DOI, DOI Biology, Earth ScienceDOI,DOIWebsite URL: https://www.sciencebase.gov/catalog/
ScienceBase is a U.S. Geological Survey (USGS) Trusted Digital Repository providing access to scientific data products and resources.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:NEON, NEON Environmental Science, Life Science, Atmospheric ScienceNEON,NEONWebsite URL: https://data.neonscience.org/
The National Science Foundation's National Ecological Observatory Network (NEON) is a continental-scale observation facility research data infrastructure, operated by Battelle, and designed to collect long-term open access ecological data. The NEON data portal provides access to standardized and quality-controlled data product types including meteorological, soil, organismal, biogeochemical, freshwater aquatic, and remote sensing data across application domains.
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For further information contact us at helpdesk@openaire.eu - Data Repository Argentina Compatibility:Not yet registeredPartners:Facultad de Ciencias Exactas y Naturales - Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales - Universidad de Buenos Aires Life Science, Drug Discovery, Genome visualisationFacultad de Ciencias Exactas y Naturales - Universidad de Buenos Aires,Facultad de Ciencias Exactas y Naturales - Universidad de Buenos AiresWebsite URL: http://target.sbg.qb.fcen.uba.ar/patho/
The Target-Pathogen database is a bioinformatic approach to prioritize drug targets in pathogens. Available genomic data for pathogens has created new opportunities for drug discovery and development, including new species, resistant and multiresistant ones. However, this data must be cohesively integrated to be fully exploited and be easy to interrogate. Target-Pathogen has been designed and developed as an online resource to allow genome wide based data consolidation from diverse sources focusing on structural druggability, essentiality and metabolic role of proteins. By allowing the integration and weighting of this information, this bioinformatic tool aims to facilitate the identification and prioritization of candidate drug targets for pathogens. With the structurome and drugome information Target-Pathogen is a unique resource to analyze whole genomes of relevants pathogens.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain, Denmark Compatibility:Not yet registeredPartners:GBIF.ES, GBIF, GBIF, GBIF.ES Life Science, Biodiversity, Taxonomic classificationGBIF.ES,GBIF,GBIF,GBIF.ESWebsite URL: http://www.gbif.es/ipt/
GBIF Spain maintains this data repository, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Able to assign DOIs to datasets, it ensures the data is disseminated in standardized format in order to facilitate wider reuse and integration of the data, for example into GBIF.org. GBIF Spain supports researchers in Spain by providing them helpdesk assistance and by hosting their data for free in this repository. It has already been used to publish/host data in scientific publications, e.g. http://dx.doi.org/10.15470/qomfu6 which is the data this Scientific Data publication is based on: http://dx.doi.org/10.1038/sdata.2016.85
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge Lensfield Road, Cambridge, CB2 1EW, UK, EMBL-EBI, Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge Lensfield Road, Cambridge, CB2 1EW, UK Life Science, Enzyme Commission number, Reaction dataUnilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge Lensfield Road, Cambridge, CB2 1EW, UK,EMBL-EBI,Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge Lensfield Road, Cambridge, CB2 1EW, UKWebsite URL: http://www.ebi.ac.uk/thornton-srv/databases/MACiE
MACiE is an electronic database of well-characterised enzymatic reactions. MACiE is the result of more than three years' collaboration between the Mitchell and Murray-Rust groups in the Unilever Centre and Prof. Janet Thornton at the European Bioinformatics Institute. The database contains the reaction mechanisms for 100 individual enzymes; this includes the overall reactions and the multiple steps that constitute them.
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For further information contact us at helpdesk@openaire.eu - Data Repository Italy Compatibility:Not yet registeredPartners:Department CIBIO, University of Trento, Department CIBIO, University of Trento Molecular biology, Computational Biology, TranscriptomicsDepartment CIBIO, University of Trento,Department CIBIO, University of TrentoWebsite URL: https://rg4db.cibio.unitn.it/
QUADRatlas is a database of experimentally-derived and computationally predicted RNA G-quadruplex (RG4s) in the human transcriptome, enriched with biological function and disease associations. QUADRatlas includes known interactions of RG4s with RNA-binding proteins (RBPs), complemented with an extensive RBP binding sites dataset. Users can thus intersect RG4s with their potential regulators and effectors, enabling the formulation of novel hypotheses on RG4 regulation, function and pathogenicity. To support this capability, we provide analysis tools for predicting whether an RBP can bind RG4s, RG4 enrichment in a gene set, and de novo RG4 prediction. Genome-browser and table views allow exploring, filtering, and downloading the data quickly for individual genes and in batch.
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For further information contact us at helpdesk@openaire.eu - Data Repository Finland Compatibility:Not yet registeredPartners:Digitarium, Finnish Biodiversity Information Facility, Digitarium, Finnish Museum of Natural History, Finnish Biodiversity Information Facility Taxonomy, Biodiversity, BioinformaticsDigitarium,Finnish Biodiversity Information Facility,Digitarium,Finnish Museum of Natural History,Finnish Biodiversity Information Facility
re3data: r3d100013555
Website URL: https://laji.fiThe Finnish Biodiversity Information Facility (FinBIF) is an open access data repository for researchers, government and the public. FinBIF consolidates many collections and datasets of living Finland in a single source. Our online portal, laji.fi, allows you to browse, search and download information about all forms of biological life, and to record and share your own observations. FinBIF is committed to the sharing and promotion of open access data.
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For further information contact us at helpdesk@openaire.eu - Data Repository Australia Compatibility:Not yet registeredPartners:NHMRC Clinical Trials Centre, NHMRC Clinical Trials Centre Virology, Preclinical Studies, Biomedical ScienceNHMRC Clinical Trials Centre,NHMRC Clinical Trials Centre
re3data: r3d100011164 , r3d100011164
Website URL: http://www.anzctr.org.au/The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. The ANZCTR mandatory data items comply with the minimum dataset requirements of the International Committee of Medical Journal Editors (ICMJE) and the World Health Organization (WHO).
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For further information contact us at helpdesk@openaire.eu - Data Repository Netherlands Compatibility:Not yet registeredPartners:Sylics, Sylics Phenomics, Neuroscience, Social and Behavioural ScienceSylics,SylicsWebsite URL: https://public.sylics.com/
AHCODA-DB is a data repository with web-based mining tools for the analysis of automated high-content mouse phenomics data. It provides users with tools to systematically explore mouse behavioural data, both with positive and negative outcome, published and unpublished, across time and experiments with single mouse resolution.
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- Data Repository United States Compatibility:Not yet registeredPartners:BIDMC, BIDMC, LCP, MIT, LCP, MIT Physiology, Biomedical Science, EpilepsyBIDMC,BIDMC,LCP, MIT,LCP, MIT
re3data: r3d100011561
Website URL: https://www.physionet.org/The PhysioNet Resource is intended to stimulate current research and new investigations in the study of complex biomedical and physiologic signals. It offers free web access to large collections of recorded physiologic signals and related open-source software. Data includes well-characterized digital recordings of physiologic signals, time series, and related data for use by the biomedical research community. PhysioNet includes collections of cardiopulmonary, neural, and other biomedical signals from healthy subjects and patients with a variety of conditions with major public health implications, including sudden cardiac death, congestive heart failure, epilepsy, gait disorders, sleep apnea, and aging.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:DOI, DOI Biology, Earth ScienceDOI,DOIWebsite URL: https://www.sciencebase.gov/catalog/
ScienceBase is a U.S. Geological Survey (USGS) Trusted Digital Repository providing access to scientific data products and resources.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Compatibility:Not yet registeredPartners:NEON, NEON Environmental Science, Life Science, Atmospheric ScienceNEON,NEONWebsite URL: https://data.neonscience.org/
The National Science Foundation's National Ecological Observatory Network (NEON) is a continental-scale observation facility research data infrastructure, operated by Battelle, and designed to collect long-term open access ecological data. The NEON data portal provides access to standardized and quality-controlled data product types including meteorological, soil, organismal, biogeochemical, freshwater aquatic, and remote sensing data across application domains.
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For further information contact us at helpdesk@openaire.eu - Data Repository Argentina Compatibility:Not yet registeredPartners:Facultad de Ciencias Exactas y Naturales - Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales - Universidad de Buenos Aires Life Science, Drug Discovery, Genome visualisationFacultad de Ciencias Exactas y Naturales - Universidad de Buenos Aires,Facultad de Ciencias Exactas y Naturales - Universidad de Buenos AiresWebsite URL: http://target.sbg.qb.fcen.uba.ar/patho/
The Target-Pathogen database is a bioinformatic approach to prioritize drug targets in pathogens. Available genomic data for pathogens has created new opportunities for drug discovery and development, including new species, resistant and multiresistant ones. However, this data must be cohesively integrated to be fully exploited and be easy to interrogate. Target-Pathogen has been designed and developed as an online resource to allow genome wide based data consolidation from diverse sources focusing on structural druggability, essentiality and metabolic role of proteins. By allowing the integration and weighting of this information, this bioinformatic tool aims to facilitate the identification and prioritization of candidate drug targets for pathogens. With the structurome and drugome information Target-Pathogen is a unique resource to analyze whole genomes of relevants pathogens.
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For further information contact us at helpdesk@openaire.eu - Data Repository Spain, Denmark Compatibility:Not yet registeredPartners:GBIF.ES, GBIF, GBIF, GBIF.ES Life Science, Biodiversity, Taxonomic classificationGBIF.ES,GBIF,GBIF,GBIF.ESWebsite URL: http://www.gbif.es/ipt/
GBIF Spain maintains this data repository, built using an installation of the GBIF Integrated Publishing Toolkit (IPT). Able to assign DOIs to datasets, it ensures the data is disseminated in standardized format in order to facilitate wider reuse and integration of the data, for example into GBIF.org. GBIF Spain supports researchers in Spain by providing them helpdesk assistance and by hosting their data for free in this repository. It has already been used to publish/host data in scientific publications, e.g. http://dx.doi.org/10.15470/qomfu6 which is the data this Scientific Data publication is based on: http://dx.doi.org/10.1038/sdata.2016.85
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For further information contact us at helpdesk@openaire.eu - Data Repository United Kingdom Compatibility:Not yet registeredPartners:Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge Lensfield Road, Cambridge, CB2 1EW, UK, EMBL-EBI, Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge Lensfield Road, Cambridge, CB2 1EW, UK Life Science, Enzyme Commission number, Reaction dataUnilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge Lensfield Road, Cambridge, CB2 1EW, UK,EMBL-EBI,Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge Lensfield Road, Cambridge, CB2 1EW, UKWebsite URL: http://www.ebi.ac.uk/thornton-srv/databases/MACiE
MACiE is an electronic database of well-characterised enzymatic reactions. MACiE is the result of more than three years' collaboration between the Mitchell and Murray-Rust groups in the Unilever Centre and Prof. Janet Thornton at the European Bioinformatics Institute. The database contains the reaction mechanisms for 100 individual enzymes; this includes the overall reactions and the multiple steps that constitute them.
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For further information contact us at helpdesk@openaire.eu - Data Repository Italy Compatibility:Not yet registeredPartners:Department CIBIO, University of Trento, Department CIBIO, University of Trento Molecular biology, Computational Biology, TranscriptomicsDepartment CIBIO, University of Trento,Department CIBIO, University of TrentoWebsite URL: https://rg4db.cibio.unitn.it/
QUADRatlas is a database of experimentally-derived and computationally predicted RNA G-quadruplex (RG4s) in the human transcriptome, enriched with biological function and disease associations. QUADRatlas includes known interactions of RG4s with RNA-binding proteins (RBPs), complemented with an extensive RBP binding sites dataset. Users can thus intersect RG4s with their potential regulators and effectors, enabling the formulation of novel hypotheses on RG4 regulation, function and pathogenicity. To support this capability, we provide analysis tools for predicting whether an RBP can bind RG4s, RG4 enrichment in a gene set, and de novo RG4 prediction. Genome-browser and table views allow exploring, filtering, and downloading the data quickly for individual genes and in batch.
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For further information contact us at helpdesk@openaire.eu - Data Repository Finland Compatibility:Not yet registeredPartners:Digitarium, Finnish Biodiversity Information Facility, Digitarium, Finnish Museum of Natural History, Finnish Biodiversity Information Facility Taxonomy, Biodiversity, BioinformaticsDigitarium,Finnish Biodiversity Information Facility,Digitarium,Finnish Museum of Natural History,Finnish Biodiversity Information Facility
re3data: r3d100013555
Website URL: https://laji.fiThe Finnish Biodiversity Information Facility (FinBIF) is an open access data repository for researchers, government and the public. FinBIF consolidates many collections and datasets of living Finland in a single source. Our online portal, laji.fi, allows you to browse, search and download information about all forms of biological life, and to record and share your own observations. FinBIF is committed to the sharing and promotion of open access data.
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For further information contact us at helpdesk@openaire.eu - Data Repository Australia Compatibility:Not yet registeredPartners:NHMRC Clinical Trials Centre, NHMRC Clinical Trials Centre Virology, Preclinical Studies, Biomedical ScienceNHMRC Clinical Trials Centre,NHMRC Clinical Trials Centre
re3data: r3d100011164 , r3d100011164
Website URL: http://www.anzctr.org.au/The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. The ANZCTR mandatory data items comply with the minimum dataset requirements of the International Committee of Medical Journal Editors (ICMJE) and the World Health Organization (WHO).
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For further information contact us at helpdesk@openaire.eu - Data Repository Netherlands Compatibility:Not yet registeredPartners:Sylics, Sylics Phenomics, Neuroscience, Social and Behavioural ScienceSylics,SylicsWebsite URL: https://public.sylics.com/
AHCODA-DB is a data repository with web-based mining tools for the analysis of automated high-content mouse phenomics data. It provides users with tools to systematically explore mouse behavioural data, both with positive and negative outcome, published and unpublished, across time and experiments with single mouse resolution.
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