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  • Better Access to Data for Global Interdisciplinary Research

    Data Repository United States Compatibility:Not yet registeredPartners:CDE, DISC, CDHA, DISC, SSCC +3 partners Humanities and Social Sciences, Social Sciences, Empirical Social Research

    re3data: r3d100011001 , r3d100011001

    Website URL: https://nesstar.ssc.wisc.edu/index.html
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  • XenMine

    Data Repository United States Compatibility:Not yet registeredPartners:Department of Genetics, Stanford University, USA, Department of Genetics, Stanford University, USA Genomics, Life Science, DNA sequence data

    doi: 10.25504/fairsharing.ihhpe9 , 10.25504/fairsharing.ihhpe9

    Website URL: http://www.xenmine.org/xenmine

    XenMine has been created to view, search and analyze Xenopus data, and provides essential information on gene expression changes and regulatory elements present in the genome. It contains published genomic datasets from both Xenopus tropicalis and Xenopus laevis.

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  • United States Health Information Knowledgebase

    Data Repository United States Compatibility:Not yet registeredPartners:CDC, HHSD, CDC, AHRQ, AHRQ +3 partners Life Sciences, Medicine, Public Health, Health Services Research, Social Medicine

    re3data: r3d100010607 , r3d100010607

    Website URL: https://ushik.ahrq.gov/mdr/portals
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  • Brain Observatory Storage Service & Database

    Data Repository United States Compatibility:Not yet registeredPartners:JHU Neuroscience, Brain, Brain imaging

    doi: 10.25504/fairsharing.980d94

    Website URL: https://bossdb.org/

    BossDB is a volumetric database for 3D and 4D neuroscience data.

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  • Center for Expanded Data Annotation and Retrieval Workbench

    Data Repository United States Compatibility:Not yet registeredPartners:Stanford University Center for Biomedical Informatics Research, CA, USA Data Integration, Data Governance, Resource metadata

    doi: 10.25504/fairsharing.v527h4 , 10.25504/fairsharing.v527h4

    Website URL: https://metadatacenter.org/

    The Center for Expanded Data Annotation and Retrieval (CEDAR) Workbench is a database of metadata templates that define the data elements needed to describe particular types of biomedical experiments. The templates include controlled terms and synonyms for specific data elements. CEDAR is an end-to-end process that enables community-based organizations to collaborate to create metadata templates, investigators or curators to use the templates to define the metadata for individual experiments, and scientists to search the metadata to access and analyze the corresponding online datasets.

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  • Middlesex University Research Data Repository

    Data Repository United Kingdom Compatibility:Not yet registeredPartners:Middlesex University Humanities and Social Sciences, Life Sciences, Natural Sciences

    re3data: r3d100013660 , r3d100013660

    Website URL: https://mdx.figshare.com/
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  • Mouse Models of Human Cancer Database

    Data Repository United States Compatibility:Not yet registeredPartners:The Jackson Laboratory, Bar Harbor, ME 04609, USA, Jackson Laboratory Animal Genetics, Pathology, Cancer

    doi: 10.25504/fairsharing.2c9d3c , 10.25504/fairsharing.2c9d3c

    re3data: r3d100011907 , r3d100011907

    Website URL: http://tumor.informatics.jax.org/mtbwi/index.do

    The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of human cancers by providing access to information on and data for: spontaneous and induced tumors in mice, genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, genetic factors associated with tumor susceptibility in mice, somatic genetic-mutations observed in tumors, and Patient Derived Xenograft (PDX) models.

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  • NASA/IPAC Extragalactic Database

    Data Repository United States Compatibility:Not yet registeredPartners:JPL Astrophysics and Astronomy

    doi: 10.25504/fairsharing.b952rv , 10.25504/fairsharing.b952rv

    re3data: r3d100010525 , r3d100010525

    Website URL: https://ned.ipac.caltech.edu/

    NASA/IPAC Extragalactic Database (NED) is a comprehensive database of multiwavelength data for extragalactic objects, providing a systematic, ongoing fusion of information integrated from hundreds of large sky surveys and tens of thousands of research publications. The contents and services span the entire observed spectrum from gamma rays through radio frequencies. As new observations are published, they are cross- identified or statistically associated with previous data and integrated into a unified database to simplify queries and retrieval.

    more_vert

  • CAPS-DB : a structural classification of helix-capping motifs

    Data Repository United Kingdom Compatibility:Not yet registeredPartners:University of Leeds Structural Biology, Molecular structure, Protein structure

    doi: 10.25504/fairsharing.r3pbp3 , 10.25504/fairsharing.r3pbp3

    Website URL: http://www.bioinsilico.org/CAPSDB

    CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps.

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  • ChemIDplus

    Data Repository United States Compatibility:Not yet registeredPartners:NLM, NLM Chemistry, Biomedical Science, Molecular structure

    doi: 10.25504/fairsharing.5949vn , 10.25504/fairsharing.5949vn

    Website URL: https://www.nlm.nih.gov/pubs/techbull/ja22/ja22_pubchem.html#note

    ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.

    more_vert
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Advanced search in
dataprovider
arrow_drop_down
Searching FieldsTerms
Any field
arrow_drop_down
includes
arrow_drop_down
1,989 Data sources
download

  • Better Access to Data for Global Interdisciplinary Research

    Data Repository United States Compatibility:Not yet registeredPartners:CDE, DISC, CDHA, DISC, SSCC +3 partners Humanities and Social Sciences, Social Sciences, Empirical Social Research

    re3data: r3d100011001 , r3d100011001

    Website URL: https://nesstar.ssc.wisc.edu/index.html
    more_vert

  • XenMine

    Data Repository United States Compatibility:Not yet registeredPartners:Department of Genetics, Stanford University, USA, Department of Genetics, Stanford University, USA Genomics, Life Science, DNA sequence data

    doi: 10.25504/fairsharing.ihhpe9 , 10.25504/fairsharing.ihhpe9

    Website URL: http://www.xenmine.org/xenmine

    XenMine has been created to view, search and analyze Xenopus data, and provides essential information on gene expression changes and regulatory elements present in the genome. It contains published genomic datasets from both Xenopus tropicalis and Xenopus laevis.

    more_vert

  • United States Health Information Knowledgebase

    Data Repository United States Compatibility:Not yet registeredPartners:CDC, HHSD, CDC, AHRQ, AHRQ +3 partners Life Sciences, Medicine, Public Health, Health Services Research, Social Medicine

    re3data: r3d100010607 , r3d100010607

    Website URL: https://ushik.ahrq.gov/mdr/portals
    more_vert

  • Brain Observatory Storage Service & Database

    Data Repository United States Compatibility:Not yet registeredPartners:JHU Neuroscience, Brain, Brain imaging

    doi: 10.25504/fairsharing.980d94

    Website URL: https://bossdb.org/

    BossDB is a volumetric database for 3D and 4D neuroscience data.

    more_vert

  • Center for Expanded Data Annotation and Retrieval Workbench

    Data Repository United States Compatibility:Not yet registeredPartners:Stanford University Center for Biomedical Informatics Research, CA, USA Data Integration, Data Governance, Resource metadata

    doi: 10.25504/fairsharing.v527h4 , 10.25504/fairsharing.v527h4

    Website URL: https://metadatacenter.org/

    The Center for Expanded Data Annotation and Retrieval (CEDAR) Workbench is a database of metadata templates that define the data elements needed to describe particular types of biomedical experiments. The templates include controlled terms and synonyms for specific data elements. CEDAR is an end-to-end process that enables community-based organizations to collaborate to create metadata templates, investigators or curators to use the templates to define the metadata for individual experiments, and scientists to search the metadata to access and analyze the corresponding online datasets.

    more_vert

  • Middlesex University Research Data Repository

    Data Repository United Kingdom Compatibility:Not yet registeredPartners:Middlesex University Humanities and Social Sciences, Life Sciences, Natural Sciences

    re3data: r3d100013660 , r3d100013660

    Website URL: https://mdx.figshare.com/
    more_vert

  • Mouse Models of Human Cancer Database

    Data Repository United States Compatibility:Not yet registeredPartners:The Jackson Laboratory, Bar Harbor, ME 04609, USA, Jackson Laboratory Animal Genetics, Pathology, Cancer

    doi: 10.25504/fairsharing.2c9d3c , 10.25504/fairsharing.2c9d3c

    re3data: r3d100011907 , r3d100011907

    Website URL: http://tumor.informatics.jax.org/mtbwi/index.do

    The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of human cancers by providing access to information on and data for: spontaneous and induced tumors in mice, genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, genetic factors associated with tumor susceptibility in mice, somatic genetic-mutations observed in tumors, and Patient Derived Xenograft (PDX) models.

    more_vert

  • NASA/IPAC Extragalactic Database

    Data Repository United States Compatibility:Not yet registeredPartners:JPL Astrophysics and Astronomy

    doi: 10.25504/fairsharing.b952rv , 10.25504/fairsharing.b952rv

    re3data: r3d100010525 , r3d100010525

    Website URL: https://ned.ipac.caltech.edu/

    NASA/IPAC Extragalactic Database (NED) is a comprehensive database of multiwavelength data for extragalactic objects, providing a systematic, ongoing fusion of information integrated from hundreds of large sky surveys and tens of thousands of research publications. The contents and services span the entire observed spectrum from gamma rays through radio frequencies. As new observations are published, they are cross- identified or statistically associated with previous data and integrated into a unified database to simplify queries and retrieval.

    more_vert

  • CAPS-DB : a structural classification of helix-capping motifs

    Data Repository United Kingdom Compatibility:Not yet registeredPartners:University of Leeds Structural Biology, Molecular structure, Protein structure

    doi: 10.25504/fairsharing.r3pbp3 , 10.25504/fairsharing.r3pbp3

    Website URL: http://www.bioinsilico.org/CAPSDB

    CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps.

    more_vert

  • ChemIDplus

    Data Repository United States Compatibility:Not yet registeredPartners:NLM, NLM Chemistry, Biomedical Science, Molecular structure

    doi: 10.25504/fairsharing.5949vn , 10.25504/fairsharing.5949vn

    Website URL: https://www.nlm.nih.gov/pubs/techbull/ja22/ja22_pubchem.html#note

    ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.

    more_vert
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