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AbstractCoral disease outbreaks are expected to increase in prevalence, frequency and severity due to climate change and other anthropogenic stressors. This is especially worrying for the Caribbean branchingAcropora palmatawhich has already seen an 80% decrease in its coral cover, with this primarily due to disease. Despite the importance of this species, there has yet to be a characterization of its transcriptomic response to disease exposure. In this study we provide the first transcriptomic analysis of 12A. palmatagenotypes, and their symbiont Symbiodiniaceae, exposed to disease in 2016 and 2017. Year was the primary driver of sample variance forA. palmataand the Symbiodiniaceae. Lower expression of ribosomal genes in the coral, and higher expression of transmembrane ion transport genes in the Symbiodiniaceae indicate that the increased virulence in 2017 may have been due to a dysbiosis between the coral and Symbiodiniaceae. We also identified a conserved suite of innate immune genes responding to the disease challenge that was activated in both years. This included genes from the Toll-like receptor and lectin pathways, and antimicrobial peptides. Co-expression analysis identified a module positively correlated to disease exposure rich in innate immune genes, with D-amino acid oxidase, a gene implicated in phagocytosis and microbiome homeostasis, as the hub gene. The role of D-amino acid oxidase in coral immunity has not been characterized but holds potential as an important enzyme for responding to disease. Our results indicate thatA. palmatamounts a similar immune response to disease exposure as other coral species previously studied, but with unique features that may be critical to the survival of this keystone Caribbean species.

In this study, a series of modules is integrated into a wave-to-wire (W2W) model that links a Boundary Element Method (BEM) solver to a Wave Energy Converter (WEC) motion solver which are in turn coupled to a wave propagation model. The hydrodynamics of the WECs are resolved in the wave structure interaction solver NEMOH, the Power Take-off (PTO) is simulated in the WEC simulation tool WEC-Sim, and the resulting perturbed wave field is coupled to the mild-slope propagation model MILDwave. The W2W model is run for verified for a realistic wave energy project consisting of a WEC farm composed of 10 5-WEC arrays of Oscillating Surging Wave Energy Converters (OSWECs). The investigated WEC farm is modelled for a real wave climate and a sloping bathymetry based on a proposed OSWEC array project off the coast of Bretagne, France. Each WEC array is arranged in a power-maximizing 2-row configuration that also minimizes the inter-array separation distance d x and d y and the arrays are located in a staggered energy maximizing configuration that also decreases the along-shore WEC farm extent. The WEC farm power output and the near and far-field effects are simulated for irregular waves with various significant wave heights wave peak periods and mean wave incidence directions β based on the modelled site wave climatology. The PTO system of each WEC in each farm is modelled as a closed-circuit hydraulic PTO system optimized for each set of incident wave conditions, mimicking the proposed site technology, namely the WaveRoller® OSWEC developed by AW Energy Ltd. The investigation in this study provides a proof of concept of the proposed W2W model in investigating potential commercial WEC projects.

The Arctic is warming and losing sea ice. Happening at a much faster rate than previously expected, these changes are causing multiple ecosystem feedbacks in the Arctic Ocean. The Arctic in Rapid Transition (ART) initiative was developed by early-career scientists as an integrative, international, multidisciplinary, long-term pan-Arctic network to study changes and feedbacks among the physical and biogeochemical components of the Arctic Ocean and their ultimate impacts on biological productivity on different timescales. In 2012, ART jointly organized with the Association of Polar Early Career Scientists their second science workshop—Overcoming Challenges of Observation to Model Integration in Marine Ecosystem Response to Sea Ice Transitions—at the Institute of Oceanology, Polish Academy of Sciences, in Sopot. This workshop aimed to identify linkages and feedbacks between atmosphere–ice–ocean forcing and biogeochemical processes, which are critical for ecosystem function, land–ocean interactions and productive capacity of the Arctic Ocean. This special thematic cluster of Polar Research brings together seven papers that grew out of workgroup discussions. Papers examine the climate change impacts on various ecosystem elements, providing important insights on the marine ecological and biogeochemical processes on various timescales. They also highlight priority areas for future research.Keywords: Climate change; biogeochemical processes; forcing; ecosystem; sea ice; Arctic Ocean.(Published: 23 December 2015)Citation: Polar Research 2015, 34, 30684, http://dx.doi.org/10.3402/polar.v34.30684

Recent regulations have required European nations to report commercial landings of Rajidae (skates) to species level since 2008. Morphological similarities between some species, variability in colouration and regional differences in common names may compromise the accuracy of some of these data. An increased proportion of rajid landings reported by the U.K. (England, Wales and Northern Ireland) are now reported to species level (42% in 2008, rising to 92% in 2010). Recent landings (2007–2010) of Rajidae by the U.K. indicated that the majority of reported landings were made by otter trawl (55·9%), tangle and gillnet (18·7%) and beam trawl (15·5%). Approximately 70% of recent landings originated from four ICES Divisions: the Irish Sea (VIIa), western English Channel (VIIe), Bristol Channel (VIIf) and southern North Sea (IVc). Recent species‐specific landings of Rajidae are appraised in terms of the species reported and the overall composition, and potential problems identified. Data from observer trips have been used to estimate the species composition of Rajidae taken in some of the main commercial fisheries operating around the British Isles, and these data are compared to landings. Although there was typically broad agreement between these data sets in terms of the main species landed, misidentification issues were apparent and Rajidae with highly patchy distributions may be under‐represented in observer data. Data from observer trips were also used to examine the discard and retention pattern. Most rajid species were first retained from total lengths, LT, of 27–34 cm, with 50% retention occurring at between 49 and 51 cm and near‐full retention at LT of 60–67 cm. Beam trawls captured a higher proportion of smaller individuals, whilst gillnets (>150 mm mesh size) caught proportionally more larger rajids.

The purpose of this report is to examine development trends in the Southern Gobi Region (SGR) as they affect livestock and wildlife. It provides an overview of the environment and natural resources of the region, discusses existing relationships and interactions among humans, livestock, large herbivore wildlife, and the natural resources on which they are dependent. It then explores the impact that economic development of the region is likely to have if that development does not consider the needs of the current users. The importance of rangeland and water resources in this region is illustrated by the case study of herder interactions with the Wild Ass or Khulan. This study found that Mongolians in the SGR, especially pastoralists, are interested in wildlife and can be willing cooperators in conservation, especially if they receive some compensation for their efforts. The general conclusion reached by this report is that direct competition for resources is not now the primary issue affecting the relationship between humans, pastoral livestock and large herbivore wildlife; rather it is the lack or loss of a conservation ethic that provides protection for traditional users of natural resources, enforcement of hunting regulations, and prevents illegal sport hunting that is rapidly reducing populations of large wild herbivores in the region. Although economic development of the region will undoubtedly proceed, having in place an effective and functional natural resource management program is critical.

The global decline of coral reefs has led to calls for strategies that reconcile biodiversity conservation and fisheries benefits. Still, considerable gaps in our understanding of the spatial ecology of ecosystem services remain. We combined spatial information on larval dispersal networks and estimates of human pressure to test the importance of connectivity for ecosystem service provision. We found that reefs receiving larvae from highly connected dispersal corridors were associated with high fish species richness. Generally, larval “sinks” contained twice as much fish biomass as “sources” and exhibited greater resilience to human pressure when protected. Despite their potential to support biodiversity persistence and sustainable fisheries, up to 70% of important dispersal corridors, sinks, and source reefs remain unprotected, emphasizing the need for increased protection of networks of well-connected reefs.

AbstractAimBiological invasions are major contributors to global change and native biodiversity decline. However, they are overlooked in marine conservation plans. Here, we examine for the first time the extent to which marine conservation planning research has addressed (or ignored) biological invasions. Furthermore, we explore the change of spatial priorities in conservation plans when different approaches are used to incorporate the presence and impacts of invasive species.LocationGlobal analysis with a focus on the Mediterranean Sea region.MethodsWe conducted a systematic literature review consisting of three steps: (1) article selection using a search engine, (2) abstract screening and (3) review of pertinent articles, which were identified in the second step. The information extracted included the scale and geographical location of each case study as well as the approach followed regarding invasive species. We also applied the softwareMarxanto produce and compare conservation plans for the Mediterranean Sea that either protect, or avoid areas impacted by invasives, or ignore the issue. One case study focused on the protection of critical habitats, and the other on endemic fish species.ResultsWe found that of 119 papers on marine spatial plans in specific biogeographic regions, only three (2.5%) explicitly took into account invasive species. When comparing the different conservation plans for each case study, we found that the majority of selected sites for protection (ca. 80%) changed in the critical habitat case study, while this proportion was lower but substantial (27%) in the endemic fish species case study.Main conclusionsBiological invasions are being widely disregarded when planning for conservation in the marine environment across local to global scales. More explicit consideration of biological invasions can significantly alter spatial conservation priorities. Future conservation plans should explicitly account for biological invasions to optimize the selection of marine protected areas.