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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: de Vries, Joost; Poulton, Alex J.; Young, Jeremy R.; Monteiro, Fanny M.; +5 Authors

    CASCADE is a global dataset for 139 extant coccolithophore taxonomic units. CASCADE includes a trait database (size and cellular organic and inorganic carbon contents) and taxonomic-specific global spatiotemporal distributions (Lat/Lon/Depth/Month/Year) of coccolithophore abundance and organic and inorganic carbon stocks. CASCADE covers all ocean basins over the upper 275 meters, spans the years 1964-2019 and includes 33,119 taxonomic-specific abundance observations. Within CASCADE, we characterise the underlying uncertainties due to measurement errors by propagating error estimates between the different studies. Full details of the data set are provided in the associated Scientific Data manuscript. The repository contains five main folders: 1) "Classification", which contains YAML files with synonyms, family-level classifications, and life cycle phase associations and definitions; 2) "Concatenated literature", which contains the merged datasets of size, PIC and POC and which were corrected for taxonomic unit synonyms; 3) "Resampled cellular datasets", which contains the resampled datasets of size, PIC and POC in long format as well as a summary table; 4) "Gridded data sets", which contains gridded datasets of abundance, PIC and POC; 5) "Species lists", which contains spreadsheets of the "common" (>20 obs) and "rare" (<20 obs) species and their number of observations. The CASCADE data set can be easily reproduced using the scripts and data provided in the associated github repository: https://github.com/nanophyto/CASCADE/ (zenodo.12797197) Correspondence to: Joost de Vries, joost.devries@bristol.ac.uk v.0.1.2 has some fixes: 1. The wrongly specified S. neapolitana was removed from synonyms.yml (this species is now S. nana)2. Longitudes were corrected for Guerreiro et al., 20233. A double entry for Dimizia et al., 2015 was fixed4. Units in Sal et al., 2013 were correct to cells/L (previously cells/ml)5. Data from Sal et al., 2013 was re-done, as some species were missing6. Duplicate entries from Baumann et al., 2000 were dropped

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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: ZENODO
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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: ZENODO
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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    Authors: Ferreira, Igor José Malfetoni; Campanharo, Wesley Augusto; Fonseca, Marisa Gesteira; Escada, Maria Isabel Sobral; +7 Authors

    This file collection contains the estimated spatial distribution of the above-ground biomass density (AGB) by the end of the 21st century across the Brazilian Atlantic Forest domain and the respective uncertanty. To develop the models, we used the maximum entropy method with projected climate data to 2100, based on the Intergovernmental Panel on Climate Change (IPCC) Representative Concentration Pathway (RCP) 4.5 from the fifth Assessment Report (AR5). The dataset is composed of four files in GeoTIFF format: calibrated-AGB-distribution.tif: raster file representing the present spatial distribution of the above-ground biomass density in the Atlantic Forest from the calibrated model. Unit: Mg/ha estimated-uncertanty-for-calibrated-agb-distribution.tif: raster file representing the estimated spatial uncertanty distribution of the calibrated above-ground biomass density. Unit: percentage. projected-AGB-distribution-under-rcp45.tif: raster file representing the projected spatial distribution of the above-ground biomass density in the Atlantic Forest by the end of 2100 under RCP 4.5 scenario. Unit: Mg/ha estimated-uncertanty-for-projected-agb-distribution.tif: raster file representing the estimated spatial uncertanty distribution of the projected above-ground biomass density. Unit: percentage. Spatial resolution: 0.0083 degree (ca. 1 km) Coordinate reference system: Geographic Coordinate System - Datum WGS84

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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    ZENODO
    Dataset . 2023
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2023
    License: CC BY
    Data sources: ZENODO
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2023
    License: CC BY
    Data sources: Datacite
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      ZENODO
      Dataset . 2023
      License: CC BY
      Data sources: Datacite
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2023
      License: CC BY
      Data sources: ZENODO
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2023
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Horton, Tammy; Serpell-Stevens, Amanda; Domedel, Georgina Valls; Bett, Brian James;

    These data record the results of processing otter trawl catches (OTSB14; Merrett & Marshall, 1980) from the National Oceanography Centre (NOC, UK) long-term study of the Porcupine Abyssal Plain (PAP), including the PAP-Sustained Observatory time-series. The data concern catches recovered during the RRS Challenger cruise 135 in 1997. Billett, D.S.M. et al. (1998). RRS Challenger Cruise 135, 15 Oct-30 Oct 1997. BENGAL: High resolution temporal and spatial study of the BENthic biology and Geochemistry of a north-eastern Atlantic abyssal Locality. Southampton Oceanography Centre Cruise Report, No. 19, 49pp.| https://www.bodc.ac.uk/resources/inventories/cruise_inventory/reports/ch135_97.pdf

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    Global Biodiversity Information Facility
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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      Global Biodiversity Information Facility
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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    Description: Leaf and invertebrate biomass in streams Project: This dataset was collected as part of the following SAFE research project: A preliminary study of the allochthonous inputs into tropical streams across a land use gradient in Sabah, Malaysia XML metadata: GEMINI compliant metadata for this dataset is available here Data worksheets: There are 2 data worksheets in this dataset: Insects (Worksheet Insects) Dimensions: 23 rows by 11 columns Description: Insect capture rates Fields: Location: SAFE project riparian site (Field type: Location) Stream: SAFE project stream (Field type: ID) Repeat: sample number for that stream (Field type: ID) Total Mass of Insects (g): the total dried mass of insects collected for each of the repeats (Field type: Numeric) Total Insects: the total number of insects collected in each repeat (Field type: Abundance) Hymenoptera: the total number of hymenoptera in each repeat (Field type: Abundance) Diptera: the total number of diptera in each repeat (Field type: Abundance) Coleoptera: the total number of coleoptera in each repeat (Field type: Abundance) Other.Insect: the grouped total of Hemiptera, Thysanoptera, Orthoptera, Blattodea, Trichoptera, Mantodea, Ephemeroptera, Dermaptera for each repeat (Field type: Abundance) Other: the grouped total of Arachnida, Entognatha, Diplopoda, Chilopoda for each repeat (Field type: Abundance) Hydrology (Worksheet Hydrology) Dimensions: 60 rows by 17 columns Description: River characteristics and litter quantities Fields: Location: SAFE project riparian site (Field type: Location) Stream Code: The stream from which the sample was taken (LFE, 15m, 30m, VJR or OP) (Field type: ID) Transect No.: The point of each sample within the 100m transect at each stream (Field type: ID) Channel Width: The bank full width of the channel at this point (Field type: Numeric) Wetted Width: The width of the runnin water at this point (Field type: Numeric) SAFE Habitat Quality Right: the SAFE Habitat quality on the right of the channel when looking upstream (Field type: Ordered Categorical) SAFE Habitat Quality Centre: the SAFE Habitat quality in the centre of the channel when looking upstream (Field type: Ordered Categorical) SAFE Habitat Quality Left: the SAFE Habitat quality on the left of the channel when looking upstream (Field type: Ordered Categorical) Flow Rate Right (s): the time taken for a tennis ball to travel 10m in the water on the right of the channel when looking upstream (Field type: Numeric) Flow Rate Centre (s): the time taken for a tennis ball to travel 10m in the water in the centre of the channel when looking upstream (Field type: Numeric) Flow Rate Left (s): the time taken for a tennis ball to travel 10m in the water on the left of the channel when looking upstream (Field type: Numeric) Average Flow Rate (s): an average of flow rate centre, flow rate left and flow rate right (Field type: Numeric) Leaf Litter Retention (g): the dried mass of leaf litter retained across the wetted width of the stream at each point (Field type: Numeric) Average Substrate Size: the average size of the substrate across the channel width of the stream at each point (Field type: Numeric) Leaf Litter Trap Position: the position where the leaf litter trap was placed relative to the stream when looking upstream (left, right or centre) (Field type: Categorical) Leaf Litter Mass: the dried mass of leaf litter collected in the leaf litter trap at each point (Field type: Numeric) Date range: 2017-02-06 to 2017-07-06 Latitudinal extent: 4.6314 to 4.7273 Longitudinal extent: 117.4556 to 117.6233 Taxonomic coverage: All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets. Animalia - Arthropoda - - Insecta - - - Coleoptera - - - Diptera - - - Hymenoptera - - [Other.Insect]

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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: ZENODO
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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: Datacite
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      ZENODO
      Dataset . 2018
      License: CC BY
      Data sources: ZENODO
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      ZENODO
      Dataset . 2018
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2018
      License: CC BY
      Data sources: Datacite
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    Authors: John W. Williams, Karyn Tabor;

    This dataset contains two metrics for climate change exposure using downscaled climate projections with the SRES A2 emissions scenario (Tabor and Williams, 2007).The metrics represent dissimilarity measurements of the squared Euclidean distance between seasonal (June–August and December–February) temperature and precipitation variables in the 20th century climate and mid-21st century climate. (1) disappearing climate risk - measure of dissimilarity between a pixel’s late 20th century climate and its closest matching pixel in the global set of 21st-century climates (2) novel climate risk - measure of dissimilarity between a pixel’s future climate and its closest matching pixel in the global set of late 20th-century climates. The data are in arcASCII format. All data are in units of standard Euclidean distance and multiplied by 1000. This is the original data. To scale the data similar to Tabor et al. (2018), remove outliers above the 99th percentile distribution before rescaling from 0-1. Unprojected number of columns 2160 number of rows 857 Lower Left X Center -179.917 Lower Left Y Center -59.084 Cell size 0.166667 decimal degrees (10 minutes or ~17 km) {"references": ["Tabor, K. et al. (2018). Tropical Protected Areas Under Increasing Threats from Climate Change and Deforestation: https://doi.org/10.3390/land7030090", "Tabor and Williams (2010). Globally downscaled climate projections for assessing the conservation impacts of climate change. https://doi.org/10.1890/09-0173.1", "Williams, J.W. et al. (2007). Projected distributions of novel and disappearing climates by 20100 AD. https://doi.org/10.1073/pnas.0606292104"]} Support for this project was provided by Conservation International, the Land Tenure Center at the University of Wisconsin, the Center for Climatic Research at the University of Wisconsin, and the Environment Program at the University of Wisconsin–Madison. This research has been funded in part by the Walton Family Foundation, the Gordon and Betty Moore Foundation, and a gift from Betty and Gordon Moore.

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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: ZENODO
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      ZENODO
      Dataset . 2018
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      ZENODO
      Dataset . 2018
      License: CC BY
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      ZENODO
      Dataset . 2018
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    Authors: Gebruk, Anna; Dgebuadze, Polina; Rogozhin, Vladimir; Ermilova, Yulia; +2 Authors

    The dataset comprises full list of species of macrozoobenthos collected from the Pechora Sea (SE Barents Sea). Grab samples were collected from 10 stations in the Pechora Bay from aboard RV Kartesh in 2020-2021. Macrobenthic invertebrates were identified with the maximum level of certainty through optical microscopy using regional taxonomic keys. All taxonomic names were standardised using the World Register of Marine Species (WoRMS). All specimens have been counted and weighted (wet biomass) on Ohaus Adventurer scales with reported accuracy to 0.01 g. Bivalve molluscs and gastropods were weighed in shells. Biomass (g. m-2) and abundance (ind m-2) are used to characterise macrozoobenthos. The sampling and identification work was carried out in collaboration with specialists from Lomonosov Moscow State University Marine Research Center and P.P. Shirshov Institute of Oceanology.

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    Authors: Fedra Trujillano; G. Jiménez; Luis Edgar Tarazona-Manrique; Najat F. Kahamba; +5 Authors

    Abstract Background In the near future, the incidence of mosquito-borne diseases may expand to new sites due to changes in temperature and rainfall patterns caused by climate change. Therefore, there is a need to use recent technological advances to improve vector surveillance methodologies. Unoccupied Aerial Vehicles (UAVs), often called drones, have been used to collect high-resolution imagery to map detailed information on mosquito habitats and direct control measures to specific areas. Supervised classification approaches have been largely used to automatically detect vector habitats. However, manual data labelling for model training limits their use for rapid responses. Open-source foundation models such as the Meta AI Segment Anything Model (SAM) can facilitate the manual digitalization of high-resolution images. This pre-trained model can assist in extracting features of interest in a diverse range of images. Here, we evaluated the performance of SAM through the Samgeo package, a Python-based wrapper for geospatial data, as it has not been applied to analyse remote sensing images for epidemiological studies. Results We tested the identification of two land cover classes of interest: water bodies and human settlements, using different UAV acquired imagery across five malaria-endemic areas in Africa, South America, and Southeast Asia. We employed manually placed point prompts and text prompts associated with specific classes of interest to guide the image segmentation and assessed the performance in the different geographic contexts. An average Dice coefficient value of 0.67 was obtained for buildings segmentation and 0.73 for water bodies using point prompts. Regarding the use of text prompts, the highest Dice coefficient value reached 0.72 for buildings and 0.70 for water bodies. Nevertheless, the performance was closely dependent on each object, landscape characteristics and selected words, resulting in varying performance. Conclusions Recent models such as SAM can potentially assist manual digitalization of imagery by vector control programs, quickly identifying key features when surveying an area of interest. However, accurate segmentation still requires user-provided manual prompts and corrections to obtain precise segmentation. Further evaluations are necessary, especially for applications in rural areas.

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    International Journal of Health Geographics
    Article . 2024 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    https://dx.doi.org/10.60692/78...
    Other literature type . 2024
    Data sources: Datacite
    https://dx.doi.org/10.60692/z1...
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      International Journal of Health Geographics
      Article . 2024 . Peer-reviewed
      License: CC BY
      Data sources: Crossref
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      https://dx.doi.org/10.60692/78...
      Other literature type . 2024
      Data sources: Datacite
      https://dx.doi.org/10.60692/z1...
      Other literature type . 2024
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    Authors: Schild, Laura; Kruse, Stefan; Heim, Birgit; Stieg, Amelie; +7 Authors

    Vegetation surveys were carried out in four different study areas in the Sakha Republic, Russia: in the mountainous region of the Verkhoyansk Range within the Oymyakonsky and Tomponsky District (Event EN21-201 - EN21-219), and in three lowland regions of Central Yakutia within the Churapchinsky, Tattinsky and the Megino-Kangalassky District (Event EN21220 - EN21264). The study area is located within the boreal forest biome that is underlain by permafrost soils. The aim was to record the projective ground vegetation in different boreal forest types studied during the RU-Land_2021_Yakutia summer field campaign in August and September 2021.Ground vegetation was surveyed for different vegetation types within a circular forest plot of 15m radius. Depending on the heterogeneity of the forest plot, multiple vegetation types (VA, VB, or VC) were chosen for the survey. The assignment of a vegetation type is always unique to a site. Their cover on the circular forest plot was recorded in percent.In total, 84 vegetation types at 58 forest plots were assessed. All data were collected by scientists form the Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research (AWI) Germany, the University of Potsdam Germany, and the North-Easter Federal University of Yakutsk (NEFU) Russia.

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    PANGAEA
    Dataset . 2023
    Data sources: PANGAEA
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      PANGAEA
      Dataset . 2023
      Data sources: PANGAEA
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    Authors: David Frantz; Franz Schug; Dominik Wiedenhofer; André Baumgart; +8 Authors

    Humanity’s role in changing the face of the earth is a long-standing concern, as is the human domination of ecosystems. Geologists are debating the introduction of a new geological epoch, the ‘anthropocene’, as humans are ‘overwhelming the great forces of nature’. In this context, the accumulation of artefacts, i.e., human-made physical objects, is a pervasive phenomenon. Variously dubbed ‘manufactured capital’, ‘technomass’, ‘human-made mass’, ‘in-use stocks’ or ‘socioeconomic material stocks’, they have become a major focus of sustainability sciences in the last decade. Globally, the mass of socioeconomic material stocks now exceeds 10e14 kg, which is roughly equal to the dry-matter equivalent of all biomass on earth. It is doubling roughly every 20 years, almost perfectly in line with ‘real’ (i.e. inflation-adjusted) GDP. In terms of mass, buildings and infrastructures (here collectively called ‘built structures’) represent the overwhelming majority of all socioeconomic material stocks. This dataset features a detailed map of material stocks in the CONUS on a 10m grid based on high resolution Earth Observation data (Sentinel-1 + Sentinel-2), crowd-sourced geodata (OSM) and material intensity factors. Spatial extent This subdataset covers the West Coast CONUS, i.e. CA OR WA For the remaining CONUS, see the related identifiers. Temporal extent The map is representative for ca. 2018. Data format The data are organized by states. Within each state, data are split into 100km x 100km tiles (EQUI7 grid), and mosaics are provided. Within each tile, images for area, volume, and mass at 10m spatial resolution are provided. Units are m², m³, and t, respectively. Each metric is split into buildings, other, rail and street (note: In the paper, other, rail, and street stocks are subsumed to mobility infrastructure). Each category is further split into subcategories (e.g. building types). Additionally, a grand total of all stocks is provided at multiple spatial resolutions and units, i.e. t at 10m x 10m kt at 100m x 100m Mt at 1km x 1km Gt at 10km x 10km For each state, mosaics of all above-described data are provided in GDAL VRT format, which can readily be opened in most Geographic Information Systems. File paths are relative, i.e. DO NOT change the file structure or file naming. Additionally, the grand total mass per state is tabulated for each county in mass_grand_total_t_10m2.tif.csv. County FIPS code and the ID in this table can be related via FIPS-dictionary_ENLOCALE.csv. Material layers Note that material-specific layers are not included in this repository because of upload limits. Only the totals are provided (i.e. the sum over all materials). However, these can easily be derived by re-applying the material intensity factors from (see related identifiers): A. Baumgart, D. Virág, D. Frantz, F. Schug, D. Wiedenhofer, Material intensity factors for buildings, roads and rail-based infrastructure in the United States. Zenodo (2022), doi:10.5281/zenodo.5045337. Further information For further information, please see the publication. A web-visualization of this dataset is available here. Visit our website to learn more about our project MAT_STOCKS - Understanding the Role of Material Stock Patterns for the Transformation to a Sustainable Society. Publication D. Frantz, F. Schug, D. Wiedenhofer, A. Baumgart, D. Virág, S. Cooper, C. Gomez-Medina, F. Lehmann, T. Udelhoven, S. van der Linden, P. Hostert, H. Haberl. Weighing the US Economy: Map of Built Structures Unveils Patterns in Human-Dominated Landscapes. In prep Funding This research was primarly funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (MAT_STOCKS, grant agreement No 741950). Workflow development was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—Project-ID 414984028-SFB 1404. Acknowledgments We thank the European Space Agency and the European Commission for freely and openly sharing Sentinel imagery; USGS for the National Land Cover Database; Microsoft for Building Footprints; Geofabrik and all contributors for OpenStreetMap.This dataset was partly produced on EODC - we thank Clement Atzberger for supporting the generation of this dataset by sharing disc space on EODC.

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    ZENODO
    Dataset . 2023
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2023
    License: CC BY
    Data sources: ZENODO
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    ZENODO
    Dataset . 2022
    License: CC BY
    Data sources: ZENODO
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    ZENODO
    Dataset . 2022
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2023
    License: CC BY
    Data sources: Datacite
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      ZENODO
      Dataset . 2023
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2023
      License: CC BY
      Data sources: ZENODO
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2022
      License: CC BY
      Data sources: ZENODO
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2022
      License: CC BY
      Data sources: Datacite
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2023
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Sánchez, Nicolás; Brüggemann, Daniel; Goldenberg, Silvan Urs;

    This data was collected as a part of a mesocosm study to investigate the ecosystem impacts of ocean alkalinity enhancement, within the EU H2020 OceanNETs project. Nine mesocosms were deployed in Taliarte Harbour (Gran Canaria, Spain) and were regularly sampled using integrated water samplers between 10th September-25th October 2021. A gradient design was used in this experiment with a total of nine different alkalinity concentrations. Seawater alkalinity ranged between ambient (0 µeq kg-1 added alkalinity, OAE0) and 2400 µeq kg-1 additional alkalinity (OAE2400). The alkalinity levels increased in equal intervals of 300 µeq kg-1 across nine mesocosms (OAE0, OAE300, OAE600, OAE900, OAE1200, OAE1500, OAE1800, OAE2100, OAE2400). This data set contains metazoan zooplankton biomass (µgC per L) from these nine mesocosms. Biomass was calculated based on zooplankton abundances transformed using carbon mass conversion factors. Metazoan zooplankton were sampled with apstein net (ø17cm, mesh size 55µm, 64.06285L) hauls taken every two days (except for days 5 and 9). Zooplankton were size fractioned and assessed in the correspondent size class (small: 55-200µm; medium: 200-500µm; large: 500µm-3mm). Within each size class, all organisms were counted and identified to the lowest possible taxonomic level, and developmental stages were differentiated where possible. Zooplankton abundances (individuals per L) converted to carbon biomass (µgC per L) using biomass conversion factors. Conversion factors are obtained from different sources (Sanchez et al. (in prep)). Briefly: i) metazoan zooplankton functional groups were sampled and measured for carbon biomass using an elemental analyser at specific points throughout the experiment, ii) individual zooplankton were photographed, measured, and their biovolumes and carbon masses derived using standard conversions cited in the literature, iii) zooplankton conversion factors from KOSMOS Gran Canaria 2019 (https://doi.pangaea.de/10.1594/PANGAEA.971765). The experiment, which lasted 33 days, was divided into four response phases (see Sánchez et al. (in prep)): i) pretreatment (days 1 to 4, treatment was implemented on day 4), ii) immediate (days 5-10), iii) shorter term (days 11-22), iv) longer term (days 23 to 33). This data set is associated to the submission by Paul et al. (in review) (https://doi.pangaea.de/10.1594/PANGAEA.966941), so we refer to this data set for basic parameters like water temperature, salinity, pH and carbonate chemistry, to avoid repetition.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: de Vries, Joost; Poulton, Alex J.; Young, Jeremy R.; Monteiro, Fanny M.; +5 Authors

    CASCADE is a global dataset for 139 extant coccolithophore taxonomic units. CASCADE includes a trait database (size and cellular organic and inorganic carbon contents) and taxonomic-specific global spatiotemporal distributions (Lat/Lon/Depth/Month/Year) of coccolithophore abundance and organic and inorganic carbon stocks. CASCADE covers all ocean basins over the upper 275 meters, spans the years 1964-2019 and includes 33,119 taxonomic-specific abundance observations. Within CASCADE, we characterise the underlying uncertainties due to measurement errors by propagating error estimates between the different studies. Full details of the data set are provided in the associated Scientific Data manuscript. The repository contains five main folders: 1) "Classification", which contains YAML files with synonyms, family-level classifications, and life cycle phase associations and definitions; 2) "Concatenated literature", which contains the merged datasets of size, PIC and POC and which were corrected for taxonomic unit synonyms; 3) "Resampled cellular datasets", which contains the resampled datasets of size, PIC and POC in long format as well as a summary table; 4) "Gridded data sets", which contains gridded datasets of abundance, PIC and POC; 5) "Species lists", which contains spreadsheets of the "common" (>20 obs) and "rare" (<20 obs) species and their number of observations. The CASCADE data set can be easily reproduced using the scripts and data provided in the associated github repository: https://github.com/nanophyto/CASCADE/ (zenodo.12797197) Correspondence to: Joost de Vries, joost.devries@bristol.ac.uk v.0.1.2 has some fixes: 1. The wrongly specified S. neapolitana was removed from synonyms.yml (this species is now S. nana)2. Longitudes were corrected for Guerreiro et al., 20233. A double entry for Dimizia et al., 2015 was fixed4. Units in Sal et al., 2013 were correct to cells/L (previously cells/ml)5. Data from Sal et al., 2013 was re-done, as some species were missing6. Duplicate entries from Baumann et al., 2000 were dropped

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: ZENODO
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: ZENODO
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Ferreira, Igor José Malfetoni; Campanharo, Wesley Augusto; Fonseca, Marisa Gesteira; Escada, Maria Isabel Sobral; +7 Authors

    This file collection contains the estimated spatial distribution of the above-ground biomass density (AGB) by the end of the 21st century across the Brazilian Atlantic Forest domain and the respective uncertanty. To develop the models, we used the maximum entropy method with projected climate data to 2100, based on the Intergovernmental Panel on Climate Change (IPCC) Representative Concentration Pathway (RCP) 4.5 from the fifth Assessment Report (AR5). The dataset is composed of four files in GeoTIFF format: calibrated-AGB-distribution.tif: raster file representing the present spatial distribution of the above-ground biomass density in the Atlantic Forest from the calibrated model. Unit: Mg/ha estimated-uncertanty-for-calibrated-agb-distribution.tif: raster file representing the estimated spatial uncertanty distribution of the calibrated above-ground biomass density. Unit: percentage. projected-AGB-distribution-under-rcp45.tif: raster file representing the projected spatial distribution of the above-ground biomass density in the Atlantic Forest by the end of 2100 under RCP 4.5 scenario. Unit: Mg/ha estimated-uncertanty-for-projected-agb-distribution.tif: raster file representing the estimated spatial uncertanty distribution of the projected above-ground biomass density. Unit: percentage. Spatial resolution: 0.0083 degree (ca. 1 km) Coordinate reference system: Geographic Coordinate System - Datum WGS84

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2023
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2023
    License: CC BY
    Data sources: ZENODO
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2023
    License: CC BY
    Data sources: Datacite
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      ZENODO
      Dataset . 2023
      License: CC BY
      Data sources: Datacite
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2023
      License: CC BY
      Data sources: ZENODO
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2023
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Horton, Tammy; Serpell-Stevens, Amanda; Domedel, Georgina Valls; Bett, Brian James;

    These data record the results of processing otter trawl catches (OTSB14; Merrett & Marshall, 1980) from the National Oceanography Centre (NOC, UK) long-term study of the Porcupine Abyssal Plain (PAP), including the PAP-Sustained Observatory time-series. The data concern catches recovered during the RRS Challenger cruise 135 in 1997. Billett, D.S.M. et al. (1998). RRS Challenger Cruise 135, 15 Oct-30 Oct 1997. BENGAL: High resolution temporal and spatial study of the BENthic biology and Geochemistry of a north-eastern Atlantic abyssal Locality. Southampton Oceanography Centre Cruise Report, No. 19, 49pp.| https://www.bodc.ac.uk/resources/inventories/cruise_inventory/reports/ch135_97.pdf

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Global Biodiversity ...arrow_drop_down
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    Global Biodiversity Information Facility
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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      Global Biodiversity Information Facility
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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    Description: Leaf and invertebrate biomass in streams Project: This dataset was collected as part of the following SAFE research project: A preliminary study of the allochthonous inputs into tropical streams across a land use gradient in Sabah, Malaysia XML metadata: GEMINI compliant metadata for this dataset is available here Data worksheets: There are 2 data worksheets in this dataset: Insects (Worksheet Insects) Dimensions: 23 rows by 11 columns Description: Insect capture rates Fields: Location: SAFE project riparian site (Field type: Location) Stream: SAFE project stream (Field type: ID) Repeat: sample number for that stream (Field type: ID) Total Mass of Insects (g): the total dried mass of insects collected for each of the repeats (Field type: Numeric) Total Insects: the total number of insects collected in each repeat (Field type: Abundance) Hymenoptera: the total number of hymenoptera in each repeat (Field type: Abundance) Diptera: the total number of diptera in each repeat (Field type: Abundance) Coleoptera: the total number of coleoptera in each repeat (Field type: Abundance) Other.Insect: the grouped total of Hemiptera, Thysanoptera, Orthoptera, Blattodea, Trichoptera, Mantodea, Ephemeroptera, Dermaptera for each repeat (Field type: Abundance) Other: the grouped total of Arachnida, Entognatha, Diplopoda, Chilopoda for each repeat (Field type: Abundance) Hydrology (Worksheet Hydrology) Dimensions: 60 rows by 17 columns Description: River characteristics and litter quantities Fields: Location: SAFE project riparian site (Field type: Location) Stream Code: The stream from which the sample was taken (LFE, 15m, 30m, VJR or OP) (Field type: ID) Transect No.: The point of each sample within the 100m transect at each stream (Field type: ID) Channel Width: The bank full width of the channel at this point (Field type: Numeric) Wetted Width: The width of the runnin water at this point (Field type: Numeric) SAFE Habitat Quality Right: the SAFE Habitat quality on the right of the channel when looking upstream (Field type: Ordered Categorical) SAFE Habitat Quality Centre: the SAFE Habitat quality in the centre of the channel when looking upstream (Field type: Ordered Categorical) SAFE Habitat Quality Left: the SAFE Habitat quality on the left of the channel when looking upstream (Field type: Ordered Categorical) Flow Rate Right (s): the time taken for a tennis ball to travel 10m in the water on the right of the channel when looking upstream (Field type: Numeric) Flow Rate Centre (s): the time taken for a tennis ball to travel 10m in the water in the centre of the channel when looking upstream (Field type: Numeric) Flow Rate Left (s): the time taken for a tennis ball to travel 10m in the water on the left of the channel when looking upstream (Field type: Numeric) Average Flow Rate (s): an average of flow rate centre, flow rate left and flow rate right (Field type: Numeric) Leaf Litter Retention (g): the dried mass of leaf litter retained across the wetted width of the stream at each point (Field type: Numeric) Average Substrate Size: the average size of the substrate across the channel width of the stream at each point (Field type: Numeric) Leaf Litter Trap Position: the position where the leaf litter trap was placed relative to the stream when looking upstream (left, right or centre) (Field type: Categorical) Leaf Litter Mass: the dried mass of leaf litter collected in the leaf litter trap at each point (Field type: Numeric) Date range: 2017-02-06 to 2017-07-06 Latitudinal extent: 4.6314 to 4.7273 Longitudinal extent: 117.4556 to 117.6233 Taxonomic coverage: All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets. Animalia - Arthropoda - - Insecta - - - Coleoptera - - - Diptera - - - Hymenoptera - - [Other.Insect]

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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: ZENODO
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    ZENODO
    Dataset . 2018
    License: CC BY
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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: Datacite
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      ZENODO
      Dataset . 2018
      License: CC BY
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      ZENODO
      Dataset . 2018
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      ZENODO
      Dataset . 2018
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    Authors: John W. Williams, Karyn Tabor;

    This dataset contains two metrics for climate change exposure using downscaled climate projections with the SRES A2 emissions scenario (Tabor and Williams, 2007).The metrics represent dissimilarity measurements of the squared Euclidean distance between seasonal (June–August and December–February) temperature and precipitation variables in the 20th century climate and mid-21st century climate. (1) disappearing climate risk - measure of dissimilarity between a pixel’s late 20th century climate and its closest matching pixel in the global set of 21st-century climates (2) novel climate risk - measure of dissimilarity between a pixel’s future climate and its closest matching pixel in the global set of late 20th-century climates. The data are in arcASCII format. All data are in units of standard Euclidean distance and multiplied by 1000. This is the original data. To scale the data similar to Tabor et al. (2018), remove outliers above the 99th percentile distribution before rescaling from 0-1. Unprojected number of columns 2160 number of rows 857 Lower Left X Center -179.917 Lower Left Y Center -59.084 Cell size 0.166667 decimal degrees (10 minutes or ~17 km) {"references": ["Tabor, K. et al. (2018). Tropical Protected Areas Under Increasing Threats from Climate Change and Deforestation: https://doi.org/10.3390/land7030090", "Tabor and Williams (2010). Globally downscaled climate projections for assessing the conservation impacts of climate change. https://doi.org/10.1890/09-0173.1", "Williams, J.W. et al. (2007). Projected distributions of novel and disappearing climates by 20100 AD. https://doi.org/10.1073/pnas.0606292104"]} Support for this project was provided by Conservation International, the Land Tenure Center at the University of Wisconsin, the Center for Climatic Research at the University of Wisconsin, and the Environment Program at the University of Wisconsin–Madison. This research has been funded in part by the Walton Family Foundation, the Gordon and Betty Moore Foundation, and a gift from Betty and Gordon Moore.

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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2018
    License: CC BY
    Data sources: ZENODO
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      ZENODO
      Dataset . 2018
      License: CC BY
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      ZENODO
      Dataset . 2018
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2018
      License: CC BY
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    Authors: Gebruk, Anna; Dgebuadze, Polina; Rogozhin, Vladimir; Ermilova, Yulia; +2 Authors

    The dataset comprises full list of species of macrozoobenthos collected from the Pechora Sea (SE Barents Sea). Grab samples were collected from 10 stations in the Pechora Bay from aboard RV Kartesh in 2020-2021. Macrobenthic invertebrates were identified with the maximum level of certainty through optical microscopy using regional taxonomic keys. All taxonomic names were standardised using the World Register of Marine Species (WoRMS). All specimens have been counted and weighted (wet biomass) on Ohaus Adventurer scales with reported accuracy to 0.01 g. Bivalve molluscs and gastropods were weighed in shells. Biomass (g. m-2) and abundance (ind m-2) are used to characterise macrozoobenthos. The sampling and identification work was carried out in collaboration with specialists from Lomonosov Moscow State University Marine Research Center and P.P. Shirshov Institute of Oceanology.

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    Authors: Fedra Trujillano; G. Jiménez; Luis Edgar Tarazona-Manrique; Najat F. Kahamba; +5 Authors

    Abstract Background In the near future, the incidence of mosquito-borne diseases may expand to new sites due to changes in temperature and rainfall patterns caused by climate change. Therefore, there is a need to use recent technological advances to improve vector surveillance methodologies. Unoccupied Aerial Vehicles (UAVs), often called drones, have been used to collect high-resolution imagery to map detailed information on mosquito habitats and direct control measures to specific areas. Supervised classification approaches have been largely used to automatically detect vector habitats. However, manual data labelling for model training limits their use for rapid responses. Open-source foundation models such as the Meta AI Segment Anything Model (SAM) can facilitate the manual digitalization of high-resolution images. This pre-trained model can assist in extracting features of interest in a diverse range of images. Here, we evaluated the performance of SAM through the Samgeo package, a Python-based wrapper for geospatial data, as it has not been applied to analyse remote sensing images for epidemiological studies. Results We tested the identification of two land cover classes of interest: water bodies and human settlements, using different UAV acquired imagery across five malaria-endemic areas in Africa, South America, and Southeast Asia. We employed manually placed point prompts and text prompts associated with specific classes of interest to guide the image segmentation and assessed the performance in the different geographic contexts. An average Dice coefficient value of 0.67 was obtained for buildings segmentation and 0.73 for water bodies using point prompts. Regarding the use of text prompts, the highest Dice coefficient value reached 0.72 for buildings and 0.70 for water bodies. Nevertheless, the performance was closely dependent on each object, landscape characteristics and selected words, resulting in varying performance. Conclusions Recent models such as SAM can potentially assist manual digitalization of imagery by vector control programs, quickly identifying key features when surveying an area of interest. However, accurate segmentation still requires user-provided manual prompts and corrections to obtain precise segmentation. Further evaluations are necessary, especially for applications in rural areas.

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    International Journal of Health Geographics
    Article . 2024 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    https://dx.doi.org/10.60692/78...
    Other literature type . 2024
    Data sources: Datacite
    https://dx.doi.org/10.60692/z1...
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      International Journal of Health Geographics
      Article . 2024 . Peer-reviewed
      License: CC BY
      Data sources: Crossref
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      https://dx.doi.org/10.60692/78...
      Other literature type . 2024
      Data sources: Datacite
      https://dx.doi.org/10.60692/z1...
      Other literature type . 2024
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    Authors: Schild, Laura; Kruse, Stefan; Heim, Birgit; Stieg, Amelie; +7 Authors

    Vegetation surveys were carried out in four different study areas in the Sakha Republic, Russia: in the mountainous region of the Verkhoyansk Range within the Oymyakonsky and Tomponsky District (Event EN21-201 - EN21-219), and in three lowland regions of Central Yakutia within the Churapchinsky, Tattinsky and the Megino-Kangalassky District (Event EN21220 - EN21264). The study area is located within the boreal forest biome that is underlain by permafrost soils. The aim was to record the projective ground vegetation in different boreal forest types studied during the RU-Land_2021_Yakutia summer field campaign in August and September 2021.Ground vegetation was surveyed for different vegetation types within a circular forest plot of 15m radius. Depending on the heterogeneity of the forest plot, multiple vegetation types (VA, VB, or VC) were chosen for the survey. The assignment of a vegetation type is always unique to a site. Their cover on the circular forest plot was recorded in percent.In total, 84 vegetation types at 58 forest plots were assessed. All data were collected by scientists form the Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research (AWI) Germany, the University of Potsdam Germany, and the North-Easter Federal University of Yakutsk (NEFU) Russia.

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    PANGAEA
    Dataset . 2023
    Data sources: PANGAEA
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      PANGAEA
      Dataset . 2023
      Data sources: PANGAEA
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    Authors: David Frantz; Franz Schug; Dominik Wiedenhofer; André Baumgart; +8 Authors

    Humanity’s role in changing the face of the earth is a long-standing concern, as is the human domination of ecosystems. Geologists are debating the introduction of a new geological epoch, the ‘anthropocene’, as humans are ‘overwhelming the great forces of nature’. In this context, the accumulation of artefacts, i.e., human-made physical objects, is a pervasive phenomenon. Variously dubbed ‘manufactured capital’, ‘technomass’, ‘human-made mass’, ‘in-use stocks’ or ‘socioeconomic material stocks’, they have become a major focus of sustainability sciences in the last decade. Globally, the mass of socioeconomic material stocks now exceeds 10e14 kg, which is roughly equal to the dry-matter equivalent of all biomass on earth. It is doubling roughly every 20 years, almost perfectly in line with ‘real’ (i.e. inflation-adjusted) GDP. In terms of mass, buildings and infrastructures (here collectively called ‘built structures’) represent the overwhelming majority of all socioeconomic material stocks. This dataset features a detailed map of material stocks in the CONUS on a 10m grid based on high resolution Earth Observation data (Sentinel-1 + Sentinel-2), crowd-sourced geodata (OSM) and material intensity factors. Spatial extent This subdataset covers the West Coast CONUS, i.e. CA OR WA For the remaining CONUS, see the related identifiers. Temporal extent The map is representative for ca. 2018. Data format The data are organized by states. Within each state, data are split into 100km x 100km tiles (EQUI7 grid), and mosaics are provided. Within each tile, images for area, volume, and mass at 10m spatial resolution are provided. Units are m², m³, and t, respectively. Each metric is split into buildings, other, rail and street (note: In the paper, other, rail, and street stocks are subsumed to mobility infrastructure). Each category is further split into subcategories (e.g. building types). Additionally, a grand total of all stocks is provided at multiple spatial resolutions and units, i.e. t at 10m x 10m kt at 100m x 100m Mt at 1km x 1km Gt at 10km x 10km For each state, mosaics of all above-described data are provided in GDAL VRT format, which can readily be opened in most Geographic Information Systems. File paths are relative, i.e. DO NOT change the file structure or file naming. Additionally, the grand total mass per state is tabulated for each county in mass_grand_total_t_10m2.tif.csv. County FIPS code and the ID in this table can be related via FIPS-dictionary_ENLOCALE.csv. Material layers Note that material-specific layers are not included in this repository because of upload limits. Only the totals are provided (i.e. the sum over all materials). However, these can easily be derived by re-applying the material intensity factors from (see related identifiers): A. Baumgart, D. Virág, D. Frantz, F. Schug, D. Wiedenhofer, Material intensity factors for buildings, roads and rail-based infrastructure in the United States. Zenodo (2022), doi:10.5281/zenodo.5045337. Further information For further information, please see the publication. A web-visualization of this dataset is available here. Visit our website to learn more about our project MAT_STOCKS - Understanding the Role of Material Stock Patterns for the Transformation to a Sustainable Society. Publication D. Frantz, F. Schug, D. Wiedenhofer, A. Baumgart, D. Virág, S. Cooper, C. Gomez-Medina, F. Lehmann, T. Udelhoven, S. van der Linden, P. Hostert, H. Haberl. Weighing the US Economy: Map of Built Structures Unveils Patterns in Human-Dominated Landscapes. In prep Funding This research was primarly funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (MAT_STOCKS, grant agreement No 741950). Workflow development was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—Project-ID 414984028-SFB 1404. Acknowledgments We thank the European Space Agency and the European Commission for freely and openly sharing Sentinel imagery; USGS for the National Land Cover Database; Microsoft for Building Footprints; Geofabrik and all contributors for OpenStreetMap.This dataset was partly produced on EODC - we thank Clement Atzberger for supporting the generation of this dataset by sharing disc space on EODC.

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    Authors: Sánchez, Nicolás; Brüggemann, Daniel; Goldenberg, Silvan Urs;

    This data was collected as a part of a mesocosm study to investigate the ecosystem impacts of ocean alkalinity enhancement, within the EU H2020 OceanNETs project. Nine mesocosms were deployed in Taliarte Harbour (Gran Canaria, Spain) and were regularly sampled using integrated water samplers between 10th September-25th October 2021. A gradient design was used in this experiment with a total of nine different alkalinity concentrations. Seawater alkalinity ranged between ambient (0 µeq kg-1 added alkalinity, OAE0) and 2400 µeq kg-1 additional alkalinity (OAE2400). The alkalinity levels increased in equal intervals of 300 µeq kg-1 across nine mesocosms (OAE0, OAE300, OAE600, OAE900, OAE1200, OAE1500, OAE1800, OAE2100, OAE2400). This data set contains metazoan zooplankton biomass (µgC per L) from these nine mesocosms. Biomass was calculated based on zooplankton abundances transformed using carbon mass conversion factors. Metazoan zooplankton were sampled with apstein net (ø17cm, mesh size 55µm, 64.06285L) hauls taken every two days (except for days 5 and 9). Zooplankton were size fractioned and assessed in the correspondent size class (small: 55-200µm; medium: 200-500µm; large: 500µm-3mm). Within each size class, all organisms were counted and identified to the lowest possible taxonomic level, and developmental stages were differentiated where possible. Zooplankton abundances (individuals per L) converted to carbon biomass (µgC per L) using biomass conversion factors. Conversion factors are obtained from different sources (Sanchez et al. (in prep)). Briefly: i) metazoan zooplankton functional groups were sampled and measured for carbon biomass using an elemental analyser at specific points throughout the experiment, ii) individual zooplankton were photographed, measured, and their biovolumes and carbon masses derived using standard conversions cited in the literature, iii) zooplankton conversion factors from KOSMOS Gran Canaria 2019 (https://doi.pangaea.de/10.1594/PANGAEA.971765). The experiment, which lasted 33 days, was divided into four response phases (see Sánchez et al. (in prep)): i) pretreatment (days 1 to 4, treatment was implemented on day 4), ii) immediate (days 5-10), iii) shorter term (days 11-22), iv) longer term (days 23 to 33). This data set is associated to the submission by Paul et al. (in review) (https://doi.pangaea.de/10.1594/PANGAEA.966941), so we refer to this data set for basic parameters like water temperature, salinity, pH and carbonate chemistry, to avoid repetition.

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