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Le changement d'utilisation des terres/de couverture est la principale cause de dégradation des écosystèmes terrestres. Cependant, ses impacts seront exacerbés en raison du changement climatique et de la croissance démographique, entraînant une expansion agricole en raison de la demande accrue de denrées alimentaires et de la baisse des rendements agricoles dans certaines zones tropicales. Les stratégies internationales visant à atténuer les impacts du changement climatique et du changement du couvert terrestre sont difficiles dans les régions en développement. Cette étude vise à évaluer des alternatives pour minimiser les impacts de ces menaces dans le cadre de trajectoires socio-économiques, dans l'une des régions les plus biologiquement riches du Guatemala et du Mexique. Cette étude est située dans le bassin versant d'Usumacinta, une région transfrontalière qui partage une histoire commune, avec des propriétés biophysiques et des contraintes économiques similaires qui ont conduit à d'importants changements dans l'utilisation/la couverture des terres. Pour comprendre les impacts sur la déforestation et les émissions de carbone des différentes pratiques de gestion des terres, nous avons développé trois scénarios (1) : le statu quo (BAU), (2) un scénario de réduction des émissions visant à réduire la déforestation et la dégradation (REDD+) et (3) zéro déforestation à partir de 2030 sur la base des engagements internationaux. Nos résultats suggèrent que d'ici 2050, la couverture terrestre naturelle pourrait réduire de 22,3 et 12,2% son étendue dans les scénarios BAU et REDD +, respectivement par rapport à 2012. Cependant, le scénario zéro déforestation montre que d'ici 2050, il serait possible d'éviter de perdre 22,4 % du bassin versant boisé (1,7 million d'hectares) et d'en récupérer 5,9 % (0,4 million d'hectares). En termes de séquestration du carbone, les projets REDD + peuvent réduire les pertes de carbone dans la végétation naturelle, mais une politique de zéro déforestation peut doubler la séquestration du carbone produite par les projets REDD + uniquement. Cette étude montre que pour réduire les pressions sur les écosystèmes, en particulier dans les régions fortement marginalisées avec des migrations importantes, il est nécessaire de mettre en œuvre des politiques transfrontalières de gestion des terres qui intègrent également des stratégies de réduction de la pauvreté. El cambio en el uso/cobertura de la tierra es la principal causa de la degradación de los ecosistemas terrestres. Sin embargo, sus impactos se exacerbarán debido al cambio climático y al crecimiento de la población, impulsando la expansión agrícola debido a una mayor demanda de alimentos y menores rendimientos agrícolas en algunas áreas tropicales. Las estrategias internacionales destinadas a mitigar los impactos del cambio climático y el cambio en la cobertura del uso de la tierra son un desafío en las regiones en desarrollo. Este estudio tiene como objetivo evaluar alternativas para minimizar los impactos de estas amenazas bajo trayectorias socioeconómicas, en una de las regiones biológicamente más ricas de Guatemala y México. Este estudio se encuentra en la cuenca de Usumacinta, una región transfronteriza que comparte una historia común, con propiedades biofísicas y limitaciones económicas similares que han llevado a grandes cambios en el uso/cobertura de la tierra. Para comprender los impactos en la deforestación y las emisiones de carbono de las diferentes prácticas de gestión de la tierra, desarrollamos tres escenarios (1): negocios como siempre (BAU), (2) un escenario de reducción de emisiones destinado a reducir la deforestación y la degradación (REDD+) y (3) cero deforestación a partir de 2030 en función de los compromisos internacionales. Nuestros resultados sugieren que para 2050, la cobertura natural de la tierra podría reducir el 22.3 y el 12.2% de su extensión bajo los escenarios BAU y REDD +, respectivamente, en comparación con 2012. Sin embargo, el escenario de deforestación cero muestra que para 2050, sería posible evitar la pérdida del 22,4% de la cuenca forestal (1,7 millones de ha) y recuperar el 5,9% (0,4 millones de hectáreas) de la misma. En términos de secuestro de carbono, los proyectos REDD + pueden reducir las pérdidas de carbono en la vegetación natural, pero una política de deforestación cero puede duplicar el secuestro de carbono producido solo por los proyectos REDD +. Este estudio muestra que para reducir las presiones sobre los ecosistemas, particularmente en regiones altamente marginadas con una migración significativa, es necesario implementar políticas transfronterizas de gestión de la tierra que también integren estrategias de alivio de la pobreza. Land-use/cover change is the major cause of terrestrial ecosystem degradation. However, its impacts will be exacerbated due to climate change and population growth, driving agricultural expansion because of higher demand of food and lower agricultural yields in some tropical areas. International strategies aimed to mitigate impacts of climate change and land use-cover change are challenging in developing regions. This study aims to evaluate alternatives to minimize the impacts of these threats under socioeconomic trajectories, in one of the biologically richest regions in Guatemala and Mexico. This study is located at the Usumacinta watershed, a transboundary region that shares a common history, with similar biophysical properties and economic constraints which have led to large land use/cover changes. To understand the impacts on deforestation and carbon emissions of different land-management practices, we developed three scenarios (1): business as usual (BAU), (2) a reducing emissions scenario aimed to reduce deforestation and degradation (REDD+), and (3) zero-deforestation from 2030 onwards based on the international commitments. Our results suggest that by 2050, natural land cover might reduce 22.3 and 12.2% of its extent under the BAU and REDD + scenarios, respectively in comparison with 2012. However, the zero-deforestation scenario shows that by 2050, it would be possible to avoid losing 22.4% of the forested watershed (1.7 million ha) and recover 5.9% (0.4 million hectares) of it. In terms of carbon sequestration, REDD + projects can reduce the carbon losses in natural vegetation, but a zero-deforestation policy can double the carbon sequestration produced by REDD + projects only. This study shows that to reduce the pressures on ecosystems, particularly in regions highly marginalized with significant migration, it is necessary to implement transboundary land-management policies that also integrate poverty alleviation strategies. استخدام الأراضي/تغيير الغطاء هو السبب الرئيسي لتدهور النظام الإيكولوجي الأرضي. ومع ذلك، ستتفاقم آثاره بسبب تغير المناخ والنمو السكاني، مما يؤدي إلى التوسع الزراعي بسبب ارتفاع الطلب على الغذاء وانخفاض الغلة الزراعية في بعض المناطق الاستوائية. تشكل الاستراتيجيات الدولية الرامية إلى التخفيف من آثار تغير المناخ وتغير استخدام الأراضي تحدياً في المناطق النامية. تهدف هذه الدراسة إلى تقييم البدائل لتقليل آثار هذه التهديدات في إطار المسارات الاجتماعية والاقتصادية، في واحدة من أغنى المناطق بيولوجيًا في غواتيمالا والمكسيك. تقع هذه الدراسة في مستجمع مياه أوسوماسينتا، وهي منطقة عابرة للحدود تشترك في تاريخ مشترك، مع خصائص فيزيائية حيوية مماثلة وقيود اقتصادية أدت إلى تغييرات كبيرة في استخدام الأراضي/تغطيتها. لفهم تأثيرات ممارسات إدارة الأراضي المختلفة على إزالة الغابات وانبعاثات الكربون، وضعنا ثلاثة سيناريوهات (1): العمل كالمعتاد (BAU)، (2) سيناريو خفض الانبعاثات الذي يهدف إلى الحد من إزالة الغابات وتدهورها (REDD+)، و (3) إزالة الغابات الصفرية اعتبارًا من عام 2030 فصاعدًا بناءً على الالتزامات الدولية. تشير نتائجنا إلى أنه بحلول عام 2050، قد يقلل الغطاء الأرضي الطبيعي بنسبة 22.3 و 12.2 ٪ من مداه في إطار سيناريو العمل الاعتيادي وسيناريو خفض الانبعاثات الناجمة عن إزالة الغابات وتدهورها في البلدان النامية، على التوالي مقارنة بعام 2012. ومع ذلك، يُظهر سيناريو إزالة الغابات الصفرية أنه بحلول عام 2050، سيكون من الممكن تجنب فقدان 22.4 ٪ من مستجمعات المياه الحرجية (1.7 مليون هكتار) واستعادة 5.9 ٪ (0.4 مليون هكتار) منها. من حيث عزل الكربون، يمكن لمشاريع خفض الانبعاثات الناجمة عن إزالة الغابات وتدهورها في البلدان النامية أن تقلل من خسائر الكربون في الغطاء النباتي الطبيعي، ولكن سياسة إزالة الغابات الصفرية يمكن أن تضاعف عزل الكربون الناتج عن مشاريع خفض الانبعاثات الناجمة عن إزالة الغابات وتدهورها في البلدان النامية فقط. تُظهر هذه الدراسة أنه للحد من الضغوط على النظم الإيكولوجية، لا سيما في المناطق المهمشة للغاية مع الهجرة الكبيرة، من الضروري تنفيذ سياسات إدارة الأراضي العابرة للحدود التي تدمج أيضًا استراتيجيات التخفيف من حدة الفقر.

Acid–base disturbances caused by environmental factors and physiological events including feeding have been well documented in several fish species, but little is known about the impact of dietary electrolyte balance (dEB). In the present study, we investigated the effect of feeding diets differing in dEB ( − 100, 200, 500 or 800 mEq/kg diet) on the growth, nutrient digestibility and energy balance of Nile tilapia. After 5 weeks on the test diet, the growth of the fish was linearly affected by the dEB levels (P< 0·001), with the lowest growth being observed in the fish fed the 800 dEB diet. The apparent digestibility coefficient (ADC) of fat was unaffected by dEB, whereas the ADC of DM and protein were curvilinearly related to the dEB levels, being lowest and highest in the 200 and 800 dEB diets, respectively. Stomach chyme pH at 3 h after feeding was linearly related to the dEB levels (P< 0·05). At the same time, blood pH of the heart (P< 0·05) and caudal vein (P< 0·01) was curvilinearly related to the dEB levels, suggesting the influence of dEB on postprandial metabolic alkalosis. Consequently, maintenance energy expenditure (MEm) was curvilinearly related to the dEB levels (P< 0·001), being 54 % higher in the 800 dEB group (88 kJ/kg0·8per d) than in the 200 dEB group (57 kJ/kg0·8per d). These results suggest that varying dEB levels in a diet have both positive and negative effects on fish. On the one hand, they improve nutrient digestibility; on the other hand, they challenge the acid–base homeostasis (pH) of fish, causing an increase in MEm, and thereby reduce the energy required for growth.

The microbiome from the reproductive tract is being investigated for its putative effect on fertility, embryo development, and health status of the human or animal host postpartum. Besides the presence of a vaginal microbiome, recent studies have claimed the existence and putative role of the uterine microbiome. Yet, the extremely low bacterial numbers and high eukaryotic/prokaryotic DNA ratio make this a highly challenging environment to study with next-generation sequencing (NGS) techniques. Here, we describe the methodological challenges that are typically encountered when performing an accurate analysis of low microbial biomass samples, illustrated by data of our own observational study. In terms of the research question, we compared the microbial composition throughout different parts of the reproductive tract of clinically healthy, mid-lactation Holstein-Friesian cows. Samples were collected from 5 dairy cows immediately after killing. Swabs were taken from the vagina, and from 4 pre-established locations of the uterine endometrium. In addition to the conventional DNA extraction blank controls, sterile swabs rubbed over disinfected disposable gloves and the disinfected surface of the uterus (tunica serosa) before incision were taken as sampling controls. The DNA extraction, DNA quantification, quantitative PCR of the 16S rRNA genes, and 16S rRNA gene sequencing were performed. In terms of NGS data analysis, we performed prevalence-based filtering of putative contaminant operational taxonomic units (OTU) using the decontam R package. Although the bacterial composition differed between the vagina and uterus, no differences in bacterial community structure (α and β diversity) were found among the different locations in the uterus. At phylum level, uterine samples had a greater relative abundance of Proteobacteria, and a lesser relative abundance of Firmicutes than vaginal samples. The number of shared OTU between vagina and uterus was limited, suggesting the existence of bacterial transmission routes other than the transcervical one to the uterus. The mid-lactation bovine genital tract is a low microbial biomass environment, which makes it difficult to distinguish between its constitutive versus contaminant microbiome. The integration of key controls is therefore strictly necessary to decrease the effect of accidentally introduced contaminant sequences and improve the reliability of results in samples with low microbial biomass.

The frequency and intensity of extreme weather is increasing concomitant with changes in the global climate change. Although wheat is the most important food crop in Europe, there is currently no comprehensive empirical information available regarding the sensitivity of European wheat to extreme weather. In this study, we assessed the sensitivity of European wheat yields to extreme weather related to phenology (sowing, heading) in cultivar trials across Europe (latitudes 37.21 degrees to 61.34 degrees and longitudes- 6.02 degrees to 26.24 degrees) during the period 1991-2014. All the observed agro-climatic extremes (>= 31 degrees C, >= 35 degrees C, or drought around heading; >= 35 degrees C from heading to maturity; excessive rainfall; heavy rainfall and low global radiation) led to marked yield penalties in a selected set of European cultivars, whereas few cultivars were found to with no yield penalty in such conditions. There were no European wheat cultivars that responded positively (+ 10%) to drought after sowing, or frost during winter (- 15 degrees C and - 20 degrees C). Positive responses to extremes were often shown by cultivars associated with specific regions, such as good performance under high temperatures by southern-origin cultivars. Consequently, a major future breeding challenge will be to evaluate the potential of combining such cultivar properties with other properties required under different growing conditions with, for example, long day conditions at higher latitudes, when the intensity and frequency of extremes rapidly increase.

ABSTRACT Four cocoa-specific acetic acid bacterium (AAB) strains, namely, Acetobacter pasteurianus 386B, Acetobacter ghanensis LMG 23848 T , Acetobacter fabarum LMG 24244 T , and Acetobacter senegalensis 108B, were analyzed kinetically and metabolically during monoculture laboratory fermentations. A cocoa pulp simulation medium (CPSM) for AAB, containing ethanol, lactic acid, and mannitol, was used. All AAB strains differed in their ethanol and lactic acid oxidation kinetics, whereby only A. pasteurianus 386B performed a fast oxidation of ethanol and lactic acid into acetic acid and acetoin, respectively. Only A. pasteurianus 386B and A. ghanensis LMG 23848 T oxidized mannitol into fructose. Coculture fermentations with A. pasteurianus 386B or A. ghanensis LMG 23848 T and Lactobacillus fermentum 222 in CPSM for lactic acid bacteria (LAB) containing glucose, fructose, and citric acid revealed oxidation of lactic acid produced by the LAB strain into acetic acid and acetoin that was faster in the case of A. pasteurianus 386B. A triculture fermentation with Saccharomyces cerevisiae H5S5K23, L. fermentum 222, and A. pasteurianus 386B, using CPSM for LAB, showed oxidation of ethanol and lactic acid produced by the yeast and LAB strain, respectively, into acetic acid and acetoin. Hence, acetic acid and acetoin are the major end metabolites of cocoa bean fermentation. All data highlight that A. pasteurianus 386B displayed beneficial functional roles to be used as a starter culture, namely, a fast oxidation of ethanol and lactic acid, and that these metabolites play a key role as substrates for A. pasteurianus in its indispensable cross-feeding interactions with yeast and LAB during cocoa bean fermentation.

Comprehending the decomposition process is crucial for our understanding of the mechanisms of carbon (C) sequestration in soils. The decomposition of plant biomass has been extensively studied. It revealed that extrinsic biomass properties that restrict its access to decomposers influence decomposition more than intrinsic ones that are only related to its chemical structure. Fungal biomass has been much less investigated, even though it contributes to a large extent to soil organic matter, and is characterized by specific biochemical properties. In this study, we investigated the extent to which decomposition of heathland fungal biomass was affected by its hydrophobicity (extrinsic property) and melanin content (intrinsic property). We hypothesized that, as for plant biomass, hydrophobicity would have a greater impact on decomposition than melanin content. Mineralization was determined as the mineralization of soil organic carbon (SOC) into CO2 by headspace GC/MS after inoculation by a heathland soil microbial community. Results show that decomposition was not affected by hydrophobicity, but was negatively correlated with melanin content. We argue that it may indicate that either melanin content is both an intrinsic and extrinsic property, or that some soil decomposers evolved the ability to use surfactants to access to hydrophobic biomass. In the latter case, biomass hydrophobicity should not be considered as a crucial extrinsic factor. We also explored the ecology of decomposition, melanin content, and hydrophobicity, among heathland soil fungal guilds. Ascomycete black yeasts had the highest melanin content, and hyaline Basidiomycete yeasts the lowest. Hydrophobicity was an all-or-nothing trait, with most isolates being hydrophobic.

A pot study was used to examine the effects of amendments such as EDTA and elemental sulfur on the growth potential, gas exchange features, uptake and mobilization of Pb by wheat (Triticum aestivum L.) in two texturally different contaminated soils at three levels of EDTA (2, 4, 8 mmol kg(-1) dry soil) and two levels of elemental sulfur (100, 200 mmol kg(-1) dry soil). EDTA resulted in more solubilization of Pb than elemental sulfur in both soils. Application of EDTA and elemental sulfur increased shoot dry matter in the loamy sand soil, whereas in the sandy clay loam soil EDTA treated plants produced lower shoot dry matter compared to that observed with elemental sulfur. Application of EDTA 10d prior to harvest increased the amount of Pb accumulated into wheat shoots with more Pb accumulated by plants from the loamy sand than from the sandy clay loam soil. However, evaluation of the relative extraction efficiency expressed as the percentage of solubilized Pb that is subsequently also effectively accumulated by the plant shoots reveals that the relatively low efficiency does not warrant the massive mobilization induced by the environmentally persistent EDTA chelator. More modest mobilization of Pb induced by elemental sulfur and the higher relative extraction of mobilized Pb therefore deserves further attention in future research. In particular, attention needs to be paid to determining soil types in which elemental sulfur can induce significant impact on soil pH and metal mobility after application of a practically realistic dosage.

Abstract A central challenge of today's ecological research is predicting how ecosystems will develop under future global change. Accurate predictions are complicated by (a) simultaneous effects of different drivers, such as climate change, nitrogen deposition and management changes; and (b) legacy effects from previous land use. We tested whether herb layer biodiversity (i.e. richness, Shannon diversity and evenness) and functional (i.e. herb cover, specific leaf area [SLA] and plant height) responses to environmental change drivers depended on land‐use history. We used resurvey data from 192 plots across nineteen European temperate forest regions, with large spatial variability in environmental change factors. We tested for interactions between land‐use history, distinguishing ancient and recent (i.e. post‐agricultural) forests and four drivers: temperature, nitrogen deposition, and aridity at the regional scale and light dynamics at the plot‐scale. Land‐use history significantly modulated global change effects on the functional signature of the herb layer (i.e. cover, SLA and plant height). Light availability was the main environmental driver of change interacting with land‐use history. We found greater herb cover and plant height decreases and SLA increases with decreasing light availability in ancient than in recent forests. Furthermore, we found greater decreases in herb cover with increased nitrogen deposition in ancient forests, whereas warming had the strongest decreasing effect on the herb cover in recent forests. Interactive effects between land‐use history and global change on biodiversity were not found, but species evenness increased more in ancient than in recent forests. Synthesis. Our results demonstrate that land‐use history should not be overlooked when predicting forest herb layer responses to global change. Moreover, we found that herb layer composition in semi‐natural deciduous forests is mainly controlled by local canopy characteristics, regulating light levels at the forest floor, and much less by environmental changes at the regional scale (here: warming, nitrogen deposition and aridity). The observed disconnect between biodiversity and functional herb layer responses to environmental changes demonstrates the importance of assessing both types of responses to increase our understanding of the possible impact of global change on the herb layer.

AbstractFood systems have increasingly strong impacts on the environment, and they influence our human well‐being. In Switzerland, food consumption accounts for one‐third of the environmental impact caused by total final consumption. At the same time, non‐communicable diseases have been linked to a number of dietary aspects. In Switzerland, all non‐communicable diseases together are responsible for 80% of total public health care costs annually. Current assessments that link environmental sustainability and human health‐oriented diets for Switzerland lack a transparent representation of the dynamic effects caused by large‐scale conversions of the food system. In this study, therefore, a system dynamics model is employed to investigate intended and unintended changes on the food system structure and on environmental impacts. Several human health‐oriented scenarios are implemented and tested with different production‐ and consumption‐side intervention strategies. Because all scenarios assuming an increase in the consumption of plant‐based products also involve higher consumption of dairy products, consequences for bovine meat need to be considered. The biological link between milk and bovine meat production leads to an unintended increase in bovine meat production as milk production increases. Intervention strategies at the consumption level thus need to be accompanied by intervention strategies at the agricultural production level. Similarly, intervention strategies that aim at improving health outcomes at the production level need to be accompanied by strategies that affect diets and thus consumption preferences. Avoiding instances of policy resistance requires integrated policy design and implementation across agriculture, the environment and human health. This integration is a challenge for farmers, the food industry and consumers alike.