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Flight trajectories of fruit flies and mosquitoes in a wind tunnel.This data file is a MySQL database file which must be uploaded to a MySQL database management system (DBMS) (e.g., via the MAMP installation: http://localhost:8888/MAMP/?language=English, as was used in the associated manuscript). Once you have installed a MySQL DBMS on your machine, make a new database called “wind_tunnel_db”. To populate this database using the data file, first download all of the data files and join them together using: cat wind_tunnel_db_* > wind_tunnel_db.sql Then run the following command to populate the wind_tunnel_db MySQL database with the result. /path/to/mysql -uroot -proot wind_tunnel_db < /path/to/wind_tunnel_db.sql replacing the paths and username/passwords as appropriate. It will take several minutes since it is a large file. The database contains several tables, which are mostly self explanatory. The key tables of interest are the “experiment” table, which lists the 4 experiments contained in this data set, the “timepoint” table, which contains the position, velocity, etc., of every fly/mosquito at every measured time point, and the “trajectory” table, which indicates which set of time points correspond to which individual trajectories. Other useful tables that have been pre-populated are the “crossing” table, which specifies trajectory segments corresponding to each plume crossing, and the “crossing_group” table, which groups sets of crossings together according to experiment and crossing identification criteria. The code that interacts with this database and recreates the figures in the associated manuscript is contained at https://github.com/rkp8000/wind_tunnel.wind_tunnel_db_aaPart 2wind_tunnel_db_abPart 3wind_tunnel_db_acPart 4wind_tunnel_db_adPart 5wind_tunnel_db_aePart 6wind_tunnel_db_afPart 7wind_tunnel_db_agPart 8wind_tunnel_db_ahPart 9wind_tunnel_db_aiInfotaxis databaseBase database for running infotaxis simulations. To see how to prepare and populate this database with simulated trajectory data, see the file _paper_auxiliary_code in the GitHub repository http://github.com/rkp8000/wind_tunnel.infotaxis_db.sql Natural decision-making often involves extended decision sequences in response to variable stimuli with complex structure. As an example, many animals follow odor plumes to locate food sources or mates, but turbulence breaks up the advected odor signal into intermittent filaments and puffs. This scenario provides an opportunity to ask how animals use sparse, instantaneous, and stochastic signal encounters to generate goal-oriented behavioral sequences. Here we examined the trajectories of flying fruit flies (Drosophila melanogaster) and mosquitoes (Aedes aegypti) navigating in controlled plumes of attractive odorants. While it is known that mean odor-triggered flight responses are dominated by upwind turns, individual responses are highly variable. We asked whether deviations from mean responses depended on specific features of odor encounters, and found that odor-triggered turns were slightly but significantly modulated by two features of odor encounters. First, encounters with higher concentrations triggered stronger upwind turns. Second, encounters occurring later in a sequence triggered weaker upwind turns. To contextualize the latter history dependence theoretically, we examined trajectories simulated from three normative tracking strategies. We found that neither a purely reactive strategy nor a strategy in which the tracker learned the plume centerline over time captured the observed history dependence. In contrast, “infotaxis”, in which flight decisions maximized expected information gain about source location, exhibited a history dependence aligned in sign with the data, though much larger in magnitude. These findings suggest that while true plume tracking is dominated by a reactive odor response it might also involve a history-dependent modulation of responses consistent with the accumulation of information about a source over multi-encounter timescales. This suggests that short-term memory processes modulating decision sequences may play a role in natural plume tracking.

Lifestyle choices,including diet,are conducive to healthy body weights in children. Dairy products and calcium supplementation have been associated with moderation of body weight and body fat. This study was designed to test the following hypotheses with overweight and obese adolescents consuming a controlled diet: - Dietary calcium supplementation as calcium carbonate or dairy calcium modulates energy balance in adolescents. - Increased calcium in the diet of adolescents will increase fecal fat excretion and thereby decrease fat absorption. - Calcium and dairy product supplementation will increase lipid oxidation resulting in an increase in energy expenditure. Subjects will consume a controlled diet containing 800 mg calcium for two three week periods. During one period they will also receive a frozen ice cream like product (smoothie) twice a day based on soy protein that contains no additional calcium. During the other period they will receive a similar product twice a day based on either dairy protein that contains 650 mg calcium or based on soy protein that contains 650 mg calcium as calcium carbonate

Matlab program and data for the paper “An energy consumption rectification method based on Bayesian linear regression and heating degree-days". "simulation model.zip" is the heating house model in Trnsys simulation software. "Example1" and "Example2" is the Matlab program and data in this paper.

Data from: 30 Years Brings Changes to the Arthropod Community of Kibale National Park, Uganda by Opito, E.A., T. Alanko, U. Kalbitzer, M. Nummelin, P. Omeja, A. Valtonen, and Colin A. Chapman. 2023, Biotropica, Article DOI: 10.1111/btp.13206

We monitored golden-cheeked warbler territories in 10 plots within an urban preserve to determine abundance, delineate territories, and document breeding success. We determined environmental conditions across the study period to examine temporal and landscape effects. We then used these data to estimate adult survival and productivity and relate these vital rates to environmental conditions experienced during our study period. We used supported covariates to predict potential effects on this population 25 years into the future. These data and code are associated with the publication in Ecosphere entitled "Urban land cover and El Nino events negatively impact population viability of an endangered North American songbird." We performed an integrated population model to evaluate the effect of climate patterns and urban land cover on the viability of an endangered wood-warbler breeding in central Texas. We used territory monitroing data from 2011–2019 to predict viability of the population 25 years into the future. We assembled and conducted the analysis in R.

Aim: Climate change threatens freshwater faunal diversity. To prioritize areas for conservation, patterns in the distribution of species must be understood. We apply genetic analysis and species distribution models to identify patterns in the distribution of freshwater amphipods around Xinjiang, China, and project the impact of climate change on endemic species. Location: Xinjiang, China. Methods: A time-calibrated tree containing 37 freshwater amphipod molecular samples from Xinjiang is built to calculate phylogenetic diversity, the standardized effect sizes of phylogenetic diversity, weighted endemism, and phylogenetic endemism, in 100 × 100 km grid cells. Niche differentiation among species in an area of high phylogenetic endemism is explored using n-dimensional hypervolumes and principal components analyses. Present-day and projected future suitability of habitat of endemic freshwater amphipod species is described using species distribution models. Results: Areas of high freshwater amphipod diversity occur along the western boundary of Xinjiang; Areas north of Irtysh River, Tian Shan mountains, and the eastern margin of Pamir, have high phylogenetic endemism. Seasonal temperature and average annual water temperature contribute most to niche differentiation between geographically related freshwater species, negatively affect the projected distributions of endemic amphipods, and with continued warming, reduce future range distributions or latitudinal shifts of species. Main Conclusions: High freshwater amphipod phylogenetic endemism occurs in Xinjiang. Environmental factors are responsible for niche differentiation of endemic species. Future climate change will substantially affect the geographic distributions of endemic amphipods. Conservation efforts should be prioritized in areas with highly concentrated phylogenetic endemism. # Diversity of endemic cold-water amphipods threatened by climate warming in northwestern China [https://doi.org/10.5061/dryad.h44j0zpsg](https://doi.org/10.5061/dryad.h44j0zpsg) Datasets for phylogenetic analysis. ## Description of the data and file structure 1.gene\_partition.txt: Used to explain the position of each gene in a tandem sequence. 2.xinjiang\_28S\_COI.fasta: A file of tandem sequence. 3.RAxML\_xinjiang\_tree.tre: A phylogenetic tree from the 52-tip data set. 4.MCMC\_tree.tre: A time-calibrated tree using three calibration points. ##

Project: Coupled Model Intercomparison Project Phase 6 (CMIP6) datasets - These data have been generated as part of the internationally-coordinated Coupled Model Intercomparison Project Phase 6 (CMIP6; see also GMD Special Issue: http://www.geosci-model-dev.net/special_issue590.html). The simulation data provides a basis for climate research designed to answer fundamental science questions and serves as resource for authors of the Sixth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC-AR6). CMIP6 is a project coordinated by the Working Group on Coupled Modelling (WGCM) as part of the World Climate Research Programme (WCRP). Phase 6 builds on previous phases executed under the leadership of the Program for Climate Model Diagnosis and Intercomparison (PCMDI) and relies on the Earth System Grid Federation (ESGF) and the Centre for Environmental Data Analysis (CEDA) along with numerous related activities for implementation. The original data is hosted and partially replicated on a federated collection of data nodes, and most of the data relied on by the IPCC is being archived for long-term preservation at the IPCC Data Distribution Centre (IPCC DDC) hosted by the German Climate Computing Center (DKRZ). The project includes simulations from about 120 global climate models and around 45 institutions and organizations worldwide. Summary: These data include the subset used by IPCC AR6 WGI authors of the datasets originally published in ESGF for 'CMIP6.ScenarioMIP.DKRZ.MPI-ESM1-2-HR.ssp126' with the full Data Reference Syntax following the template 'mip_era.activity_id.institution_id.source_id.experiment_id.member_id.table_id.variable_id.grid_label.version'. The MPI-ESM1.2-HR climate model, released in 2017, includes the following components: aerosol: none, prescribed MACv2-SP, atmos: ECHAM6.3 (spectral T127; 384 x 192 longitude/latitude; 95 levels; top level 0.01 hPa), land: JSBACH3.20, landIce: none/prescribed, ocean: MPIOM1.63 (tripolar TP04, approximately 0.4deg; 802 x 404 longitude/latitude; 40 levels; top grid cell 0-12 m), ocnBgchem: HAMOCC6, seaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model). The model was run by the Deutsches Klimarechenzentrum, Hamburg 20146, Germany (DKRZ) in native nominal resolutions: aerosol: 100 km, atmos: 100 km, land: 100 km, landIce: none, ocean: 50 km, ocnBgchem: 50 km, seaIce: 50 km.

Raw datasets (.mat and .fig files) and codes (.mlx and .m files) used in our manuscript of the same title. Figure numbers correspond with the figure numbers in the corresponding manuscript. Figure 4: Effects of kinetic parameters on Solar-to-chemical (STC) efficiencies and reaction selectivity Figure 5: Solar-to-chemical (STC) efficiencies for a model incorporating competing undesired redox reactions implemented for different redox shuttle pairs Figure 7: Solar-to-chemical efficiencies for an ensemble of light absorbers Figure 8: Maximum solar-to-chemical (STC) efficiencies and corresponding number of light absorbers as a function of asymmetry factors in limiting current density for redox shuttle reduction Figure 9: Solar-to-chemical efficiencies for an increasing number of light absorbers for different total absorptance values (99%, 75%, 50%). Figure 10: Qualitative comparisons between experimental measurements and model predictions for a photocatalytic suspension reactor The main piece of the code developed is provided as an interactive .mlx file; not all subfunction calls within the main code is included, and can be shared upon reasonable request via email from the lead (luisab@umich.edu) and the corresponding authors (rbchan@umich.edu) of this paper.