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It is increasingly acknowledged that climate change is influencing terrestrial ecosystems by increased drought and rainfall intensities. Soil microbes are key drivers of many processes in terrestrial systems and rely on water in soil pores to fulfill their life cycles and functions. However, little is known on how drought and rainfall fluctuations, which affect the composition and structure of microbial communities, persist once original moisture conditions have been restored. Here, we study how simulated short-term drying and re-wetting events shape the community composition of soil fungi and prokaryotes. In a mesocosm experiment, soil was exposed to an extreme drought, then re-wetted to optimal moisture (50% WHC, water holding capacity) or to saturation level (100% WHC). Composition, community structure and diversity of microbes were measured by sequencing ITS and 16S rRNA gene amplicons 3 weeks after original moisture content had been restored. Drying and extreme re-wetting decreased richness of microbial communities, but not evenness. Abundance changes were observed in only 8% of prokaryote OTUs, and 25% of fungal OTUs, whereas all other OTUs did not differ between drying and re-wetting treatments. Two specific legacy response groups (LRGs) were observed for both prokaryotes and fungi. OTUs belonging to the first LRG decreased in relative abundance in soil with a history of drought, whereas OTUs that increased in soil with a history of drought formed a second LRG. These microbial responses were spread among different phyla. Drought appeared to be more important for the microbial community composition than the following extreme re-wetting. 16S profiles were correlated with both inorganic N concentration and basal respiration and ITS profiles correlated with fungal biomass. We conclude that a drying and/or an extreme re-wetting history can persist in soil microbial communities via specific response groups composed of members with broad phylogenetic origins, with possible functional consequences on soil processes and plant species. As a large fraction of OTUs responding to drying and re-wetting belonged to the rare biosphere, our results suggest that low abundant microbial species are potentially important for ecosystem responses to extreme weather events.

Abstract The growth and development of maize (Zea mays L.) largely depends on its nutrient uptake through the root. Hence, studying its growth, response, and associated metabolic reprogramming to stress conditions is becoming an important research direction. A genome-scale metabolic model (GSM) for the maize root was developed to study its metabolic reprogramming under nitrogen stress conditions. The model was reconstructed based on the available information from KEGG, UniProt, and MaizeCyc. Transcriptomics data derived from the roots of hydroponically grown maize plants were used to incorporate regulatory constraints in the model and simulate nitrogen-non-limiting (N+) and nitrogen-deficient (N−) condition. Model-predicted flux-sum variability analysis achieved 70% accuracy compared with the experimental change of metabolite levels. In addition to predicting important metabolic reprogramming in central carbon, fatty acid, amino acid, and other secondary metabolism, maize root GSM predicted several metabolites (l-methionine, l-asparagine, l-lysine, cholesterol, and l-pipecolate) playing a regulatory role in the root biomass growth. Furthermore, this study revealed eight phosphatidylcholine and phosphatidylglycerol metabolites which, even though not coupled with biomass production, played a key role in the increased biomass production under N-deficient conditions. Overall, the omics-integrated GSM provides a promising tool to facilitate stress condition analysis for maize root and engineer better stress-tolerant maize genotypes.

AbstractThe bioenergy crops such as energycane, miscanthus, and sorghum are being genetically modified using state of the art synthetic biotechnology techniques to accumulate energy‐rich molecules such as triacylglycerides (TAGs) in their vegetative cells to enhance their utility for biofuel production. During the initial genetic developmental phase, many hundreds of transgenic phenotypes are produced. The efficiency of the production pipeline requires early and minimally destructive determination of oil content in individuals. Current screening methods require time‐intensive sample preparation and extraction with chemical solvents for each plant tissue. A rapid screen will also be needed for developing industrial extraction as these crops become available. In the present study, we have devised a proton relaxation nuclear magnetic resonance (1H‐NMR) method for single‐step, non‐invasive, and chemical‐free characterization of in‐situ lipids in untreated and pretreated lignocellulosic biomass. The systematic evaluation of NMR relaxation time distribution provided insight into the proton environment associated with the lipids in the biomass. It resolved two distinct lipid‐associated subpopulations of proton nuclei that characterize total in‐situ lipids into bound and free oil based on their “molecular tumbling” rate. The T1T2 correlation spectra also facilitated the resolution of the influence of various pretreatment procedures on the chemical composition of molecular and local 1H population in each sample. Furthermore, we show that hydrothermally pretreated biomass is suitable for direct NMR analysis unlike dilute acid and alkaline pretreated biomass which needs an additional step for neutralization.

AbstractAimAgriculture is one of the greatest pressures on biodiversity. Regional studies have shown that the presence of natural habitat and landscape heterogeneity are beneficial for biodiversity in agriculture, but it remains unclear whether their importance varies geographically. Here, we use local biodiversity data to determine which local and landscape variables are most associated with biodiversity patterns and whether their association varies between tropical and non‐tropical regions.LocationGlobal terrestrial area in forest biomes.Major taxa studiedMore than 21,000 species of vertebrates, invertebrates, plants and other taxa.MethodsWe used generalized linear mixed‐effects models to analyse the relationships between either community total abundance or species richness (derived from the PREDICTS database) and a number of site‐level (predominant land use and land‐use intensity) and landscape‐level variables (distance to forest, the percentage of natural habitat in the surrounding landscape, landscape homogeneity, the number of land‐cover types in the landscape, and total fertilizer application). We compared the associations of these variables with biodiversity in tropical and non‐tropical regions.ResultsIn most cases, changes in biodiversity associated with landscape‐level variables were greater than those associated with local land use and land‐use intensity. Increased natural habitat availability was associated with the most consistent increases in biodiversity. Landscape homogeneity was also important but showed different directions of biodiversity change between regions. Associations with fertilizer application or the number of land‐cover types were generally weaker, although still of greater magnitude than for the local land‐use measures.Main conclusionsOur results highlight similarities and differences in the association of local‐ and landscape‐scale variables with local biodiversity in tropical and non‐tropical regions. Landscape natural habitat availability had a consistent positive association with biodiversity, highlighting the key role of landscape management in the maintenance of biodiversity in croplands. Landscape‐scale variables were almost always associated with greater changes in biodiversity than the local‐scale measures.

This article reports upon research on vegan transition, which I bring into dialogue with Sara Ahmed’s figure of the killjoy. Ahmed’s work on affect and the feminist killjoy is found to be apt for considering contemporary vegans and their transgression of normative scripts of happiness and commensality in a dominant meat and dairy consuming culture. The decentring of joy and happiness is also found to be integral to the critical deconstructive work of the vegan killjoy. Ahmed’s ideas further complement the frame of practice theory that I draw upon to understand the process of transition especially in the sense of opposing the meanings of dominant practices. Although food and veganism are not commented upon by Ahmed, the vegan subject constitutes, I argue, a potent further example of what she terms an “affect alien” who must willfully struggle against a dominant affective order and community. Drawing upon interviews with 40 vegans based in the UK, I illustrate examples of contestation and negotiation by vegans and those close to them. The article finds in the figure of the killjoy not only a frame by which to partly understand the negotiation of relationships between vegans and non-vegans but also an opportunity for further intersectional labour between veganism and feminism.

Le présent article pose comme hypothèse principale qu’il existe une spécificité insulaire en matière de changement climatique, tant dans le domaine géopolitique que dans le domaine économique. A la différence des pays continentaux, le changement climatique est un facteur de structuration des États insulaires. Créée en 1990, 2 ans après que le GIEC commence ses travaux, l’Alliance des Petits États insulaires (AOSIS) s’est beaucoup investie dans la ratification du Protocole de Kyoto. Ces derniers se considèrent en effet comme les premières et principales victimes du changement climatique dont le coût pour leurs économies sera nettement plus élevé que celui supporté par les pays continentaux. Aux coûts directs, résultant de l’aléa naturel, notamment la montée du niveau de la mer et l’érosion du littoral qui lui est associée, se surimposeront des coûts induits par les mesures prises au niveau international pour lutter contre le changement climatique. Ces mesures conduisent à remettre la distance géographique au cœur de la logique de localisation des entreprises. La limitation des déplacements aériens et maritimes au long cours qui en résultera devrait entraîner une réduction de la demande mondiale pour les produits et services touristiques insulaires, suivie d’une concurrence exacerbée entre les îles pour attirer cette demande réduite. On assistera alors à la marginalisation des économies insulaires ne pouvant se positionner sur des marchés de niche aux échelles mondiales et régionales avec pour principaux corollaires l’exode rural et la migration internationale. Les recompositions économiques et territoriales qui s’annoncent sont des processus durables qui s’inscrivent dans le temps long. En revanche, le sommet de Copenhague a montré que la structuration politique des États insulaires sur la scène internationale est un processus fragile. L’AOSIS est sortie éclatée de ce sommet. L’avenir des îles est définitivement sous contrainte du changement climatique et il s’annonce bien sombre.