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description Publicationkeyboard_double_arrow_right Article 2024 PortugalPublisher:Wiley Jorge Assis; Eliza Fragkopoulou; Lidiane Gouvêa; Miguel B. Araújo; Ester A. Serrão;doi: 10.1111/ddi.13837
AbstractAimFuture climate change threatens marine forests across the world, potentially disrupting ecosystem function and services. Nonetheless, the direction and intensity of climate‐induced changes in kelp forest biodiversity remain unknown, precluding well‐informed conservation and management practices.LocationGlobal.MethodsWe use machine‐learning models to forecast global changes in species richness and community composition of 105 kelp forest species under contrasting Shared Socioeconomic Pathway (SSP) scenarios of climate change (decade 2090–2100): one aligned with the Paris Agreement and another of substantially higher emissions.ResultsA poleward and depth shift in species distributions is forecasted, translating into ~15% less area in the extent of the global biome, coupled with marked regional biodiversity changes. Community composition changes are mostly projected in the Arctic, the Northern Pacific and Atlantic, and Australasia, owing to poleward range expansions and wide low latitude losses.Main ConclusionsBy surpassing the Paris Agreement expectations, species reshuffling may simplify and impair ecosystem services in numerous temperate regions of Australasia, Southern Africa, Southern America and the Northern Atlantic, and in the tropical Pacific, where complete species losses were projected without replacement. These estimates, flagging threatened regions and species, as well as refugial areas of population persistence, can now inform conservation, management and restoration practices considering future climate change.
Diversity and Distri... arrow_drop_down http://dx.doi.org/10.1111/ddi....Article . 2024 . Peer-reviewedData sources: European Union Open Data Portaladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert Diversity and Distri... arrow_drop_down http://dx.doi.org/10.1111/ddi....Article . 2024 . Peer-reviewedData sources: European Union Open Data Portaladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article , Journal 2021 PortugalPublisher:Elsevier BV Assis, J.; Fragkopoulou, Eliza; Serrão, Ester A.; e Costa, Horta; Gandra, Miguel; Abecasis, David;pmid: 33940752
The need for international cooperation in marine resource management and conservation has been reflected in the increasing number of agreements aiming for effective and well-connected networks of Marine Protected Areas (MPAs). However, the extent to which individual MPAs are connected remains mostly unknown. Here, we use a biophysical model tuned with empirical data on species dispersal ecology to predict connectivity of a vast spectrum of biodiversity in the European network of marine reserves (i.e., no-take MPAs). Our results highlight the correlation between empirical propagule duration data and connectivity potential and show weak network connectivity and strong isolation for major ecological groups, resulting from the lack of direct connectivity corridors between reserves over vast regions. The particularly high isolation predicted for ecosystem structuring species (e.g., corals, sponges, macroalgae and seagrass) might potentially undermine biodiversity conservation efforts if local retention is insufficient and unmanaged populations are at risk. Isolation might also be problematic for populations' persistence in the light of climate change and expected species range shifts. Our findings provide novel insights for management directives, highlighting the location of regions requiring additional marine reserves to function as stepping-stone connectivity corridors.
Sapientia arrow_drop_down The Science of The Total EnvironmentArticle . 2021 . Peer-reviewedLicense: Elsevier TDMData sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert Sapientia arrow_drop_down The Science of The Total EnvironmentArticle . 2021 . Peer-reviewedLicense: Elsevier TDMData sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article , Other literature type 2022 PortugalPublisher:Springer Science and Business Media LLC Funded by:FCT | SFRH/BD/144878/2019, FCT | DL 57/2016/CP1361/CT0035FCT| SFRH/BD/144878/2019 ,FCT| DL 57/2016/CP1361/CT0035Marquez, L.; Fragkopoulou, Eliza; Cavanaugh, K. C.; Houskeeper, H. F.; Assis, J.;AbstractClimate change is producing shifts in the distribution and abundance of marine species. Such is the case of kelp forests, important marine ecosystem-structuring species whose distributional range limits have been shifting worldwide. Synthesizing long-term time series of kelp forest observations is therefore vital for understanding the drivers shaping ecosystem dynamics and for predicting responses to ongoing and future climate changes. Traditional methods of mapping kelp from satellite imagery are time-consuming and expensive, as they require high amount of human effort for image processing and algorithm optimization. Here we propose the use of mask region-based convolutional neural networks (Mask R-CNN) to automatically assimilate data from open-source satellite imagery (Landsat Thematic Mapper) and detect kelp forest canopy cover. The analyses focused on the giant kelpMacrocystis pyriferaalong the shorelines of southern California and Baja California in the northeastern Pacific. Model hyper-parameterization was tuned through cross-validation procedures testing the effect of data augmentation, and different learning rates and anchor sizes. The optimal model detected kelp forests with high performance and low levels of overprediction (Jaccard’s index: 0.87 ± 0.07; Dice index: 0.93 ± 0.04; over prediction: 0.06) and allowed reconstructing a time series of 32 years in Baja California (Mexico), a region known for its high variability in kelp owing to El Niño events. The proposed framework based on Mask R-CNN now joins the list of cost-efficient tools for long-term marine ecological monitoring, facilitating well-informed biodiversity conservation, management and decision making.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article 2022 PortugalPublisher:Springer Science and Business Media LLC Funded by:FCT | SFRH/BD/144878/2019, FCT | SFRH/BSAB/150485/2019, FCT | DL 57/2016/CP1361/CT0035FCT| SFRH/BD/144878/2019 ,FCT| SFRH/BSAB/150485/2019 ,FCT| DL 57/2016/CP1361/CT0035Lidiane P. Gouvêa; Paulo A. Horta; Eliza Fragkopoulou; Carlos F. D. Gurgel; Leticia M. C. Peres; Eduardo Bastos; Fernanda Ramlov; Giulia Burle; Gabrielle Koerich; Cintia D. L. Martins; Ester A. Serrão; Jorge Assis;Phenotypic plasticity and local adaptation can adjust individual responses to environmental changes across species' ranges. Studies addressing the implications of such traits have been underrepresented in the marine environment. Sargassum cymosum represents an ideal model to test phenotypic plasticity, as populations along the southwestern Atlantic Ocean display a sharp decrease in abundance toward distributional range limits. We (1) characterized the macroecological environment of S. cymosum across a latitudinal gradient, (2) evaluated potential differences in ecophysiological adjustments (biomass, photosynthetic pigments, phenolic compounds, total soluble sugars and proteins, and carbon-nitrogen-CN-content), and (3) tested for differences in thermal tolerance based on time series analyses produced from the present to contrasting representative concentration pathways scenarios (RCP) of future climate changes. Our results showed distinct macroecological environments, corresponding to tropical and warm temperate conditions, driving biomass and ecophysiological adjustments of S. cymosum. Populations from the two environments displayed contrasting thermal tolerances, with tropical individuals better coping with thermal stress when compared to more temperate ones (lethal temperatures of 33 degrees C vs. 30 degrees C); yet both populations lose biomass in response to increasing thermal stress while increasing secondary metabolites (for example, carotenoids and phenolic compounds) and decrease chlorophyll's content, Fv/Fm, total soluble sugars concentration and CN ratio, owing to oxidative stress. Despite evidence for phenotypic plasticity, significant future losses might occur in both tropical and warm temperate populations, particularly under the no mitigation RCP scenario, also known as the business as usual (that is, 8.5). In this context, broad compliance with the Paris Agreement might counteract projected impacts of climate change, safeguarding Sargassum forests in the years to come. This study was supported by grants from Boticario Foundation, FAPESC-Foundation Support Research and Innovation in the State of Santa Catarina, Capes Higher Education Personnel Improvement Coordination, CNPq-National Council for Scientific and Technological Development, Petrobras Ambiental, REBENTOS-Habitat monitoring network coastal Benthic and ProspecMar-Islands Sustainable Prospecting in Ocean Islands: Biodiversity, Chemistry, Ecology and Biotechnology, Rede Coral Vivo, REDEALGAS, a Pew Marine Fellowship, the Foundation for Science and Technology (FCT) of Portugal via SFRH/BSAB/150485/2019, SFRH/BD/144878/2019, UID/Multi/04326/2019, PTDC/BIA-CBI/6515/2020 and the transitional norm DL57/2016/CP1361/CT0035. LPG received a doctorate scholarship (88882.438723/2019-01) from Capes. CFDG thanks CNPq grants PQ-309658/2016-0and306304/2019-8. PAH thanks CAPES-Senior Visitor, CAPESPrInt 310793/2018-01, CNPq-PVE 407365/2013-3, CNPq-Universal 426215/2016-8 and CNPq-PQ308537/2019-0. GK received a master's scholarship from CAPES. info:eu-repo/semantics/submittedVersion
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article , Other literature type , Journal 2019 Portugal, Poland, France, FrancePublisher:PeerJ Funded by:FCT | SFRH/BPD/111003/2015FCT| SFRH/BPD/111003/2015Joanna Pilczynska; Joanna Pilczynska; Ester A. Serrão; Silvia Cocito; Henrique Queiroga; Eliza Fragkopoulou; Jorge Assis; Joana Boavida; Joana Boavida;BackgroundIn the ocean, the variability of environmental conditions found along depth gradients exposes populations to contrasting levels of perturbation, which can be reflected in the overall patterns of species genetic diversity. At shallow sites, resource availability may structure large, persistent and well-connected populations with higher levels of diversity. In contrast, the more extreme conditions, such as thermal stress during heat waves, can lead to population bottlenecks and genetic erosion, inverting the natural expectation. Here we examine how genetic diversity varies along depth for a long-lived, important ecosystem-structuring species, the red gorgonian,Paramuricea clavata.MethodsWe used five polymorphic microsatellite markers to infer differences in genetic diversity and differentiation, and to detect bottleneck signs between shallow and deeper populations across the Atlantic Ocean and the Mediterranean Sea. We further explored the potential relationship between depth and environmental gradients (temperature, ocean currents, productivity and slope) on the observed patterns of diversity by means of generalized linear mixed models.ResultsAn overall pattern of higher genetic diversity was found in the deeper sites of the Atlantic Ocean and the Mediterranean Sea. This pattern was largely explained by bottom temperatures, with a linear pattern of decreasing genetic diversity with increasing thermal stress. Genetic differentiation patterns showed higher gene flow within sites (i.e., shallow vs. deeper populations) than between sites. Recent genetic bottlenecks were found in two populations of shallow depths.DiscussionOur results highlight the role of deep refugial populations safeguarding higher and unique genetic diversity for marine structuring species. Theoretical regression modelling demonstrated how thermal stress alone may reduce population sizes and diversity levels of shallow water populations. In fact, the examination of time series on a daily basis showed the upper water masses repeatedly reaching lethal temperatures forP. clavata. Differentiation patterns showed that the deep richer populations are isolated. Gene flow was also inferred across different depths; however, not in sufficient levels to offset the detrimental effects of surface environmental conditions on genetic diversity. The identification of deep isolated areas with high conservation value for the red gorgonian represents an important step in the face of ongoing and future climate changes.
PeerJ arrow_drop_down Institut national des sciences de l'Univers: HAL-INSUArticle . 2019Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert PeerJ arrow_drop_down Institut national des sciences de l'Univers: HAL-INSUArticle . 2019Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article 2025 PortugalPublisher:Springer Science and Business Media LLC Authors: Assis, Jorge; Fragkopoulou, Eliza; Serrao, Ester A.; Bastos Araújo, Miguel;Ocean currents are fundamental drivers of marine biodiversity distribution, mediating the exchange of genetic material and individuals between populations. Their effect ranges from creating barriers that foster isolation to facilitating long-distance dispersal, which is crucial for species expansion and resilience in the face of climate change. Despite the significance of oceanographic connectivity, comprehensive global estimates remain elusive, hindering our understanding of species' dispersal ecology and limiting the development of effective conservation strategies. We present the first dataset of connectivity estimates (including probability of connectivity and travel time) along the world's coastlines. The dataset is derived from Lagrangian simulations of passive dispersal driven by 21 years of ocean current data and can be combined with species' biological traits, including seasonality and duration of planktonic dispersal stages. Alongside, we provide coastalNet, an R package designed to streamline access, analysis, and visualization of connectivity estimates. The dataset provides a new benchmark for research in oceanographic connectivity, enabling a deeper exploration of the complex dynamics of coastal marine ecosystems and informing more effective conservation strategies.
Scientific Data arrow_drop_down Sapientia Repositório da Universidade do AlgarveArticle . 2025License: CC BY NC NDData sources: Sapientia Repositório da Universidade do Algarveadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert Scientific Data arrow_drop_down Sapientia Repositório da Universidade do AlgarveArticle . 2025License: CC BY NC NDData sources: Sapientia Repositório da Universidade do Algarveadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article , Journal 2021 PortugalPublisher:Frontiers Media SA Funded by:FCT | PARIS, FCT | SFRH/BD/144878/2019, FCT | SFRH/BSAB/150485/2019 +1 projectsFCT| PARIS ,FCT| SFRH/BD/144878/2019 ,FCT| SFRH/BSAB/150485/2019 ,FCT| CCMARFragkopoulou, Eliza; Serrao, Ester; Horta, Paulo A.; Koerich, Gabrielle; Assis, J.;Climate driven range shifts are driving the redistribution of marine species and threatening the functioning and stability of marine ecosystems. For species that are the structural basis of marine ecosystems, such effects can be magnified into drastic loss of ecosystem functioning and resilience. Rhodoliths are unattached calcareous red algae that provide key complex three-dimensional habitats for highly diverse biological communities. These globally distributed biodiversity hotspots are increasingly threatened by ongoing environmental changes, mainly ocean acidification and warming, with wide negative impacts anticipated in the years to come. These are superimposed upon major local stressors caused by direct destructive impacts, such as bottom trawling, which act synergistically in the deterioration of the rhodolith ecosystem health and function. Anticipating the potential impacts of future environmental changes on the rhodolith biome may inform timely mitigation strategies integrating local effects of bottom trawling over vulnerable areas at global scales. This study aimed to identify future climate refugia, as regions where persistence is predicted under contrasting climate scenarios, and to analyze their trawling threat levels. This was approached by developing species distribution models with ecologically relevant environmental predictors, combined with the development of a global bottom trawling intensity index to identify heavily fished regions overlaying rhodoliths. Our results revealed the importance of light, thermal stress and pH driving the global distribution of rhodoliths. Future projections showed poleward expansions and contractions of suitable habitats at lower latitudes, structuring cryptic depth refugia, particularly evident under the more severe warming scenario RCP 8.5. Our results suggest that if management and conservation measures are not taken, bottom trawling may directly threaten the persistence of key rhodolith refugia. Since rhodoliths have slow growth rates, high sensitivity and ecological importance, understanding how their current and future distribution might be susceptible to bottom trawling pressure, may contribute to determine the fate of both the species and their associated communities.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article 2024Publisher:Springer Science and Business Media LLC Funded by:FCT | SFRH/BD/144878/2019FCT| SFRH/BD/144878/2019Jorge Assis; Ester A. Serrão; Eliza Fragkopoulou; Térence Legrand; Lidiane Gouvêa; Miguel B. Araújo;pmid: 38951688
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article 2022 Saudi Arabia, Saudi Arabia, PortugalPublisher:Frontiers Media SA Funded by:EC | FACE-IT, FCT | DL 57/2016/CP1361/CT0035, FCT | SFRH/BD/144878/2019EC| FACE-IT ,FCT| DL 57/2016/CP1361/CT0035 ,FCT| SFRH/BD/144878/2019Jorge Assis; Ester A. Serrão; Carlos M. Duarte; Carlos M. Duarte; Eliza Fragkopoulou; Dorte Krause-Jensen; Dorte Krause-Jensen;handle: 10754/676236
Accelerating warming and associated loss of sea ice are expected to promote the expansion of coastal marine forests (macrophytes) along the massive Arctic coastlines. Yet, this region has received much less attention compared to other global oceans. The available future projections of Arctic macrophytes are still limited to few species and regions, and mostly focused at lower latitude ranges, thus precluding well-informed IPCC impact assessments, conservation and management. Here we aim to quantify potential distributional changes of Arctic intertidal and subtidal brown macroalgae and eelgrass by the year 2100, relative to present. We estimate habitat suitability by means of species distribution modeling, considering changes in seawater temperature, salinity, nutrients and sea ice cover under two greenhouse gas emission scenarios, one consistent with the Paris Agreement (RCP 2.6) and the other representing limited mitigation strategies (RCP 8.5). As data on substrate conditions do not exist, the models were restricted to the depth range supporting Arctic macrophytes (down to 5 m for eelgrass and 30 m for brown macroalgae). Models projected major expansions of Arctic macrophytes between 69,940 and 123,360 km2, depending on the climate scenario, with polar distribution limits shifting northwards by up to 1.5 latitude degrees at 21.81 km per decade. Such expansions in response to changing climate will likely elicit major changes in biodiversity and ecosystem functions in the future Arctic. Expansions are, however, less intense than those already realized over the past century, indicating an overall slowing down despite accelerated warming as habitats become increasingly occupied.
Frontiers in Marine ... arrow_drop_down King Abdullah University of Science and Technology: KAUST RepositoryArticle . 2022License: CC BYData sources: Bielefeld Academic Search Engine (BASE)Frontiers in Marine ScienceArticle . 2022 . Peer-reviewedData sources: European Union Open Data Portaladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert Frontiers in Marine ... arrow_drop_down King Abdullah University of Science and Technology: KAUST RepositoryArticle . 2022License: CC BYData sources: Bielefeld Academic Search Engine (BASE)Frontiers in Marine ScienceArticle . 2022 . Peer-reviewedData sources: European Union Open Data Portaladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.
description Publicationkeyboard_double_arrow_right Article 2024 PortugalPublisher:Wiley Jorge Assis; Eliza Fragkopoulou; Lidiane Gouvêa; Miguel B. Araújo; Ester A. Serrão;doi: 10.1111/ddi.13837
AbstractAimFuture climate change threatens marine forests across the world, potentially disrupting ecosystem function and services. Nonetheless, the direction and intensity of climate‐induced changes in kelp forest biodiversity remain unknown, precluding well‐informed conservation and management practices.LocationGlobal.MethodsWe use machine‐learning models to forecast global changes in species richness and community composition of 105 kelp forest species under contrasting Shared Socioeconomic Pathway (SSP) scenarios of climate change (decade 2090–2100): one aligned with the Paris Agreement and another of substantially higher emissions.ResultsA poleward and depth shift in species distributions is forecasted, translating into ~15% less area in the extent of the global biome, coupled with marked regional biodiversity changes. Community composition changes are mostly projected in the Arctic, the Northern Pacific and Atlantic, and Australasia, owing to poleward range expansions and wide low latitude losses.Main ConclusionsBy surpassing the Paris Agreement expectations, species reshuffling may simplify and impair ecosystem services in numerous temperate regions of Australasia, Southern Africa, Southern America and the Northern Atlantic, and in the tropical Pacific, where complete species losses were projected without replacement. These estimates, flagging threatened regions and species, as well as refugial areas of population persistence, can now inform conservation, management and restoration practices considering future climate change.
Diversity and Distri... arrow_drop_down http://dx.doi.org/10.1111/ddi....Article . 2024 . Peer-reviewedData sources: European Union Open Data Portaladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert Diversity and Distri... arrow_drop_down http://dx.doi.org/10.1111/ddi....Article . 2024 . Peer-reviewedData sources: European Union Open Data Portaladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article , Journal 2021 PortugalPublisher:Elsevier BV Assis, J.; Fragkopoulou, Eliza; Serrão, Ester A.; e Costa, Horta; Gandra, Miguel; Abecasis, David;pmid: 33940752
The need for international cooperation in marine resource management and conservation has been reflected in the increasing number of agreements aiming for effective and well-connected networks of Marine Protected Areas (MPAs). However, the extent to which individual MPAs are connected remains mostly unknown. Here, we use a biophysical model tuned with empirical data on species dispersal ecology to predict connectivity of a vast spectrum of biodiversity in the European network of marine reserves (i.e., no-take MPAs). Our results highlight the correlation between empirical propagule duration data and connectivity potential and show weak network connectivity and strong isolation for major ecological groups, resulting from the lack of direct connectivity corridors between reserves over vast regions. The particularly high isolation predicted for ecosystem structuring species (e.g., corals, sponges, macroalgae and seagrass) might potentially undermine biodiversity conservation efforts if local retention is insufficient and unmanaged populations are at risk. Isolation might also be problematic for populations' persistence in the light of climate change and expected species range shifts. Our findings provide novel insights for management directives, highlighting the location of regions requiring additional marine reserves to function as stepping-stone connectivity corridors.
Sapientia arrow_drop_down The Science of The Total EnvironmentArticle . 2021 . Peer-reviewedLicense: Elsevier TDMData sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert Sapientia arrow_drop_down The Science of The Total EnvironmentArticle . 2021 . Peer-reviewedLicense: Elsevier TDMData sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article , Other literature type 2022 PortugalPublisher:Springer Science and Business Media LLC Funded by:FCT | SFRH/BD/144878/2019, FCT | DL 57/2016/CP1361/CT0035FCT| SFRH/BD/144878/2019 ,FCT| DL 57/2016/CP1361/CT0035Marquez, L.; Fragkopoulou, Eliza; Cavanaugh, K. C.; Houskeeper, H. F.; Assis, J.;AbstractClimate change is producing shifts in the distribution and abundance of marine species. Such is the case of kelp forests, important marine ecosystem-structuring species whose distributional range limits have been shifting worldwide. Synthesizing long-term time series of kelp forest observations is therefore vital for understanding the drivers shaping ecosystem dynamics and for predicting responses to ongoing and future climate changes. Traditional methods of mapping kelp from satellite imagery are time-consuming and expensive, as they require high amount of human effort for image processing and algorithm optimization. Here we propose the use of mask region-based convolutional neural networks (Mask R-CNN) to automatically assimilate data from open-source satellite imagery (Landsat Thematic Mapper) and detect kelp forest canopy cover. The analyses focused on the giant kelpMacrocystis pyriferaalong the shorelines of southern California and Baja California in the northeastern Pacific. Model hyper-parameterization was tuned through cross-validation procedures testing the effect of data augmentation, and different learning rates and anchor sizes. The optimal model detected kelp forests with high performance and low levels of overprediction (Jaccard’s index: 0.87 ± 0.07; Dice index: 0.93 ± 0.04; over prediction: 0.06) and allowed reconstructing a time series of 32 years in Baja California (Mexico), a region known for its high variability in kelp owing to El Niño events. The proposed framework based on Mask R-CNN now joins the list of cost-efficient tools for long-term marine ecological monitoring, facilitating well-informed biodiversity conservation, management and decision making.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article 2022 PortugalPublisher:Springer Science and Business Media LLC Funded by:FCT | SFRH/BD/144878/2019, FCT | SFRH/BSAB/150485/2019, FCT | DL 57/2016/CP1361/CT0035FCT| SFRH/BD/144878/2019 ,FCT| SFRH/BSAB/150485/2019 ,FCT| DL 57/2016/CP1361/CT0035Lidiane P. Gouvêa; Paulo A. Horta; Eliza Fragkopoulou; Carlos F. D. Gurgel; Leticia M. C. Peres; Eduardo Bastos; Fernanda Ramlov; Giulia Burle; Gabrielle Koerich; Cintia D. L. Martins; Ester A. Serrão; Jorge Assis;Phenotypic plasticity and local adaptation can adjust individual responses to environmental changes across species' ranges. Studies addressing the implications of such traits have been underrepresented in the marine environment. Sargassum cymosum represents an ideal model to test phenotypic plasticity, as populations along the southwestern Atlantic Ocean display a sharp decrease in abundance toward distributional range limits. We (1) characterized the macroecological environment of S. cymosum across a latitudinal gradient, (2) evaluated potential differences in ecophysiological adjustments (biomass, photosynthetic pigments, phenolic compounds, total soluble sugars and proteins, and carbon-nitrogen-CN-content), and (3) tested for differences in thermal tolerance based on time series analyses produced from the present to contrasting representative concentration pathways scenarios (RCP) of future climate changes. Our results showed distinct macroecological environments, corresponding to tropical and warm temperate conditions, driving biomass and ecophysiological adjustments of S. cymosum. Populations from the two environments displayed contrasting thermal tolerances, with tropical individuals better coping with thermal stress when compared to more temperate ones (lethal temperatures of 33 degrees C vs. 30 degrees C); yet both populations lose biomass in response to increasing thermal stress while increasing secondary metabolites (for example, carotenoids and phenolic compounds) and decrease chlorophyll's content, Fv/Fm, total soluble sugars concentration and CN ratio, owing to oxidative stress. Despite evidence for phenotypic plasticity, significant future losses might occur in both tropical and warm temperate populations, particularly under the no mitigation RCP scenario, also known as the business as usual (that is, 8.5). In this context, broad compliance with the Paris Agreement might counteract projected impacts of climate change, safeguarding Sargassum forests in the years to come. This study was supported by grants from Boticario Foundation, FAPESC-Foundation Support Research and Innovation in the State of Santa Catarina, Capes Higher Education Personnel Improvement Coordination, CNPq-National Council for Scientific and Technological Development, Petrobras Ambiental, REBENTOS-Habitat monitoring network coastal Benthic and ProspecMar-Islands Sustainable Prospecting in Ocean Islands: Biodiversity, Chemistry, Ecology and Biotechnology, Rede Coral Vivo, REDEALGAS, a Pew Marine Fellowship, the Foundation for Science and Technology (FCT) of Portugal via SFRH/BSAB/150485/2019, SFRH/BD/144878/2019, UID/Multi/04326/2019, PTDC/BIA-CBI/6515/2020 and the transitional norm DL57/2016/CP1361/CT0035. LPG received a doctorate scholarship (88882.438723/2019-01) from Capes. CFDG thanks CNPq grants PQ-309658/2016-0and306304/2019-8. PAH thanks CAPES-Senior Visitor, CAPESPrInt 310793/2018-01, CNPq-PVE 407365/2013-3, CNPq-Universal 426215/2016-8 and CNPq-PQ308537/2019-0. GK received a master's scholarship from CAPES. info:eu-repo/semantics/submittedVersion
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article , Other literature type , Journal 2019 Portugal, Poland, France, FrancePublisher:PeerJ Funded by:FCT | SFRH/BPD/111003/2015FCT| SFRH/BPD/111003/2015Joanna Pilczynska; Joanna Pilczynska; Ester A. Serrão; Silvia Cocito; Henrique Queiroga; Eliza Fragkopoulou; Jorge Assis; Joana Boavida; Joana Boavida;BackgroundIn the ocean, the variability of environmental conditions found along depth gradients exposes populations to contrasting levels of perturbation, which can be reflected in the overall patterns of species genetic diversity. At shallow sites, resource availability may structure large, persistent and well-connected populations with higher levels of diversity. In contrast, the more extreme conditions, such as thermal stress during heat waves, can lead to population bottlenecks and genetic erosion, inverting the natural expectation. Here we examine how genetic diversity varies along depth for a long-lived, important ecosystem-structuring species, the red gorgonian,Paramuricea clavata.MethodsWe used five polymorphic microsatellite markers to infer differences in genetic diversity and differentiation, and to detect bottleneck signs between shallow and deeper populations across the Atlantic Ocean and the Mediterranean Sea. We further explored the potential relationship between depth and environmental gradients (temperature, ocean currents, productivity and slope) on the observed patterns of diversity by means of generalized linear mixed models.ResultsAn overall pattern of higher genetic diversity was found in the deeper sites of the Atlantic Ocean and the Mediterranean Sea. This pattern was largely explained by bottom temperatures, with a linear pattern of decreasing genetic diversity with increasing thermal stress. Genetic differentiation patterns showed higher gene flow within sites (i.e., shallow vs. deeper populations) than between sites. Recent genetic bottlenecks were found in two populations of shallow depths.DiscussionOur results highlight the role of deep refugial populations safeguarding higher and unique genetic diversity for marine structuring species. Theoretical regression modelling demonstrated how thermal stress alone may reduce population sizes and diversity levels of shallow water populations. In fact, the examination of time series on a daily basis showed the upper water masses repeatedly reaching lethal temperatures forP. clavata. Differentiation patterns showed that the deep richer populations are isolated. Gene flow was also inferred across different depths; however, not in sufficient levels to offset the detrimental effects of surface environmental conditions on genetic diversity. The identification of deep isolated areas with high conservation value for the red gorgonian represents an important step in the face of ongoing and future climate changes.
PeerJ arrow_drop_down Institut national des sciences de l'Univers: HAL-INSUArticle . 2019Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert PeerJ arrow_drop_down Institut national des sciences de l'Univers: HAL-INSUArticle . 2019Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article 2025 PortugalPublisher:Springer Science and Business Media LLC Authors: Assis, Jorge; Fragkopoulou, Eliza; Serrao, Ester A.; Bastos Araújo, Miguel;Ocean currents are fundamental drivers of marine biodiversity distribution, mediating the exchange of genetic material and individuals between populations. Their effect ranges from creating barriers that foster isolation to facilitating long-distance dispersal, which is crucial for species expansion and resilience in the face of climate change. Despite the significance of oceanographic connectivity, comprehensive global estimates remain elusive, hindering our understanding of species' dispersal ecology and limiting the development of effective conservation strategies. We present the first dataset of connectivity estimates (including probability of connectivity and travel time) along the world's coastlines. The dataset is derived from Lagrangian simulations of passive dispersal driven by 21 years of ocean current data and can be combined with species' biological traits, including seasonality and duration of planktonic dispersal stages. Alongside, we provide coastalNet, an R package designed to streamline access, analysis, and visualization of connectivity estimates. The dataset provides a new benchmark for research in oceanographic connectivity, enabling a deeper exploration of the complex dynamics of coastal marine ecosystems and informing more effective conservation strategies.
Scientific Data arrow_drop_down Sapientia Repositório da Universidade do AlgarveArticle . 2025License: CC BY NC NDData sources: Sapientia Repositório da Universidade do Algarveadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert Scientific Data arrow_drop_down Sapientia Repositório da Universidade do AlgarveArticle . 2025License: CC BY NC NDData sources: Sapientia Repositório da Universidade do Algarveadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article , Journal 2021 PortugalPublisher:Frontiers Media SA Funded by:FCT | PARIS, FCT | SFRH/BD/144878/2019, FCT | SFRH/BSAB/150485/2019 +1 projectsFCT| PARIS ,FCT| SFRH/BD/144878/2019 ,FCT| SFRH/BSAB/150485/2019 ,FCT| CCMARFragkopoulou, Eliza; Serrao, Ester; Horta, Paulo A.; Koerich, Gabrielle; Assis, J.;Climate driven range shifts are driving the redistribution of marine species and threatening the functioning and stability of marine ecosystems. For species that are the structural basis of marine ecosystems, such effects can be magnified into drastic loss of ecosystem functioning and resilience. Rhodoliths are unattached calcareous red algae that provide key complex three-dimensional habitats for highly diverse biological communities. These globally distributed biodiversity hotspots are increasingly threatened by ongoing environmental changes, mainly ocean acidification and warming, with wide negative impacts anticipated in the years to come. These are superimposed upon major local stressors caused by direct destructive impacts, such as bottom trawling, which act synergistically in the deterioration of the rhodolith ecosystem health and function. Anticipating the potential impacts of future environmental changes on the rhodolith biome may inform timely mitigation strategies integrating local effects of bottom trawling over vulnerable areas at global scales. This study aimed to identify future climate refugia, as regions where persistence is predicted under contrasting climate scenarios, and to analyze their trawling threat levels. This was approached by developing species distribution models with ecologically relevant environmental predictors, combined with the development of a global bottom trawling intensity index to identify heavily fished regions overlaying rhodoliths. Our results revealed the importance of light, thermal stress and pH driving the global distribution of rhodoliths. Future projections showed poleward expansions and contractions of suitable habitats at lower latitudes, structuring cryptic depth refugia, particularly evident under the more severe warming scenario RCP 8.5. Our results suggest that if management and conservation measures are not taken, bottom trawling may directly threaten the persistence of key rhodolith refugia. Since rhodoliths have slow growth rates, high sensitivity and ecological importance, understanding how their current and future distribution might be susceptible to bottom trawling pressure, may contribute to determine the fate of both the species and their associated communities.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article 2024Publisher:Springer Science and Business Media LLC Funded by:FCT | SFRH/BD/144878/2019FCT| SFRH/BD/144878/2019Jorge Assis; Ester A. Serrão; Eliza Fragkopoulou; Térence Legrand; Lidiane Gouvêa; Miguel B. Araújo;pmid: 38951688
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.description Publicationkeyboard_double_arrow_right Article 2022 Saudi Arabia, Saudi Arabia, PortugalPublisher:Frontiers Media SA Funded by:EC | FACE-IT, FCT | DL 57/2016/CP1361/CT0035, FCT | SFRH/BD/144878/2019EC| FACE-IT ,FCT| DL 57/2016/CP1361/CT0035 ,FCT| SFRH/BD/144878/2019Jorge Assis; Ester A. Serrão; Carlos M. Duarte; Carlos M. Duarte; Eliza Fragkopoulou; Dorte Krause-Jensen; Dorte Krause-Jensen;handle: 10754/676236
Accelerating warming and associated loss of sea ice are expected to promote the expansion of coastal marine forests (macrophytes) along the massive Arctic coastlines. Yet, this region has received much less attention compared to other global oceans. The available future projections of Arctic macrophytes are still limited to few species and regions, and mostly focused at lower latitude ranges, thus precluding well-informed IPCC impact assessments, conservation and management. Here we aim to quantify potential distributional changes of Arctic intertidal and subtidal brown macroalgae and eelgrass by the year 2100, relative to present. We estimate habitat suitability by means of species distribution modeling, considering changes in seawater temperature, salinity, nutrients and sea ice cover under two greenhouse gas emission scenarios, one consistent with the Paris Agreement (RCP 2.6) and the other representing limited mitigation strategies (RCP 8.5). As data on substrate conditions do not exist, the models were restricted to the depth range supporting Arctic macrophytes (down to 5 m for eelgrass and 30 m for brown macroalgae). Models projected major expansions of Arctic macrophytes between 69,940 and 123,360 km2, depending on the climate scenario, with polar distribution limits shifting northwards by up to 1.5 latitude degrees at 21.81 km per decade. Such expansions in response to changing climate will likely elicit major changes in biodiversity and ecosystem functions in the future Arctic. Expansions are, however, less intense than those already realized over the past century, indicating an overall slowing down despite accelerated warming as habitats become increasingly occupied.
Frontiers in Marine ... arrow_drop_down King Abdullah University of Science and Technology: KAUST RepositoryArticle . 2022License: CC BYData sources: Bielefeld Academic Search Engine (BASE)Frontiers in Marine ScienceArticle . 2022 . Peer-reviewedData sources: European Union Open Data Portaladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.more_vert Frontiers in Marine ... arrow_drop_down King Abdullah University of Science and Technology: KAUST RepositoryArticle . 2022License: CC BYData sources: Bielefeld Academic Search Engine (BASE)Frontiers in Marine ScienceArticle . 2022 . Peer-reviewedData sources: European Union Open Data Portaladd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.
