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description Publicationkeyboard_double_arrow_right Article , Journal 2011 United KingdomPublisher:Royal Society of Chemistry (RSC) Dirk M. Guldi; Timothy Clark; José Santos; Nazario Martín; Nazario Martín; Alejandro Ortiz; Braulio Insuasty; Thilo Bauer; Beatriz M. Illescas; Mateusz Wielopolski;doi: 10.1039/c0ee00499e
Rigid and soluble electron donor–acceptor conjugates (3 and 11) that combine π-extended tetrathiafulvalene (exTTF) as an electron donor and C60 as an electron acceptor have been synthesized using oligo-vinylfluorene (oFV) linkers to connect the electroactive entities. Fluorescence and transient absorption measurements confirm that light-induced excitation induces charge-transfer reactions over distances of 28 A in THF. The incorporation of vinylene spacers into oligofluorene molecular wires has been shown both experimentally and theoretically to improve the charge-transfer features significantly to give a β value of 0.075 ± 0.001 A−1. Enhanced π-conjugation caused by higher orbital overlap is responsible for this trend.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/c0ee00499e&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 23 citations 23 popularity Average influence Average impulse Top 10% Powered by BIP!
visibility 53visibility views 53 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/c0ee00499e&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021Publisher:American Chemical Society (ACS) Funded by:[no funder available]Wiebke Alex; Patrick Lorenz; Christian Henkel; Timothy Clark; Andreas Hirsch; Dirk M. Guldi;doi: 10.1021/jacs.1c04322
pmid: 34958548
We describe for the first time the full reaction coordinate regarding the photoisomerization of red-absorbing norbornadienes (NBDs) to quadricyclanes (QCs). Our studies go beyond steady-state investigations by using an arsenal of time-resolved techniques. Importantly, the red absorption of NBDs is made possible by a different charge-transfer character; adjusting its strength enables control over the photoreversibility of the rearrangement. In the case of strong charge-transfer character (a weakly electron-withdrawing ester and a strongly electron-donating dimethylaniline), photoirradiation with visible light into the delocalized charge-transfer absorption of NBD affords QC reversibly. In stark contrast, UV photoirradiation into the NBD localized excited state leads to a photoinduced degradation and cannot be back-isomerized to NBD under any circumstances. If the charge-transfer character is weak (a weakly electron-withdrawing ester and a weakly electron-donating phenyl), reversibility is seen independently of the photoirradiation light.
Smithsonian figshare arrow_drop_down Smithsonian figshareArticle . 2021License: CC BY NCData sources: Bielefeld Academic Search Engine (BASE)Journal of the American Chemical SocietyArticle . 2021 . Peer-reviewedLicense: STM Policy #29Data sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1021/jacs.1c04322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesbronze 19 citations 19 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
more_vert Smithsonian figshare arrow_drop_down Smithsonian figshareArticle . 2021License: CC BY NCData sources: Bielefeld Academic Search Engine (BASE)Journal of the American Chemical SocietyArticle . 2021 . Peer-reviewedLicense: STM Policy #29Data sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1021/jacs.1c04322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2023 United KingdomPublisher:American Chemical Society (ACS) Funded by:SNSF | Understanding and Modelli..., SNSF | ABCD Antibodies: Recombin...SNSF| Understanding and Modelling Cryptic Binding Pockets for Biology and Drug Discovery ,SNSF| ABCD Antibodies: Recombinant antibodies for researchAuthors: Jacqueline C. Calderón; Passainte Ibrahim; Dorothea Gobbo; Francesco Luigi Gervasio; +1 AuthorsJacqueline C. Calderón; Passainte Ibrahim; Dorothea Gobbo; Francesco Luigi Gervasio; Timothy Clark;pmid: 37824365
We use enhanced-sampling simulations with an effective collective variable to study the activation of the β2-adrenergic receptor in the presence of ligands with different efficacy. The free-energy profiles are computed for the ligand-free (apo) receptor and binary (apo-receptor + G-protein α-subunit and receptor + ligand) and ternary complexes. The results are not only compatible with available experiments but also allow unprecedented structural insight into the nature of GPCR conformations along the activation pathway and their role in the activation mechanism. In particular, the simulations reveal an unexpected mode of action of partial agonists such as salmeterol and salbutamol that arises already in the binary complex without the G-protein. Specific differences in the polar interactions with residues in TM5, which are required to stabilize an optimal TM6 conformation that facilitates G-protein binding and receptor activation, play a major role in differentiating them from full agonists.
Journal of Chemical ... arrow_drop_down Journal of Chemical Information and ModelingArticle . 2023 . Peer-reviewedLicense: STM Policy #29Data sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1021/acs.jcim.3c00805&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen 2 citations 2 popularity Top 10% influence Average impulse Average Powered by BIP!
more_vert Journal of Chemical ... arrow_drop_down Journal of Chemical Information and ModelingArticle . 2023 . Peer-reviewedLicense: STM Policy #29Data sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1021/acs.jcim.3c00805&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Journal 2010 United Kingdom, FrancePublisher:Springer Science and Business Media LLC Authors: Timothy Clark; Timothy Clark;pmid: 20063173
A technique known as intensity filtering is introduced to select valence-like virtual orbitals for calculating the local electron affinity, EA(L). Intensity filtering allows EA(L) to be calculated using semiempirical molecular orbital techniques that include polarisation functions. Without intensity filtering, such techniques yield spurious EA(L) values that are dominated by the polarisation functions. As intensity filtering should also be applicable for ab initio or density functional theory calculations with large basis sets, it also makes EA(L) available for these techniques.
INRIA a CCSD electro... arrow_drop_down INRIA a CCSD electronic archive serverArticle . 2010Data sources: INRIA a CCSD electronic archive serverINRIA a CCSD electronic archive serverArticle . 2010Data sources: INRIA a CCSD electronic archive serverJournal of Molecular ModelingArticle . 2010 . Peer-reviewedLicense: Springer TDMData sources: CrossrefUniversity of Portsmouth: Portsmouth Research PortalArticle . 2010Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1007/s00894-009-0607-x&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 35 citations 35 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!
more_vert INRIA a CCSD electro... arrow_drop_down INRIA a CCSD electronic archive serverArticle . 2010Data sources: INRIA a CCSD electronic archive serverINRIA a CCSD electronic archive serverArticle . 2010Data sources: INRIA a CCSD electronic archive serverJournal of Molecular ModelingArticle . 2010 . Peer-reviewedLicense: Springer TDMData sources: CrossrefUniversity of Portsmouth: Portsmouth Research PortalArticle . 2010Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1007/s00894-009-0607-x&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu
description Publicationkeyboard_double_arrow_right Article , Journal 2011 United KingdomPublisher:Royal Society of Chemistry (RSC) Dirk M. Guldi; Timothy Clark; José Santos; Nazario Martín; Nazario Martín; Alejandro Ortiz; Braulio Insuasty; Thilo Bauer; Beatriz M. Illescas; Mateusz Wielopolski;doi: 10.1039/c0ee00499e
Rigid and soluble electron donor–acceptor conjugates (3 and 11) that combine π-extended tetrathiafulvalene (exTTF) as an electron donor and C60 as an electron acceptor have been synthesized using oligo-vinylfluorene (oFV) linkers to connect the electroactive entities. Fluorescence and transient absorption measurements confirm that light-induced excitation induces charge-transfer reactions over distances of 28 A in THF. The incorporation of vinylene spacers into oligofluorene molecular wires has been shown both experimentally and theoretically to improve the charge-transfer features significantly to give a β value of 0.075 ± 0.001 A−1. Enhanced π-conjugation caused by higher orbital overlap is responsible for this trend.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/c0ee00499e&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 23 citations 23 popularity Average influence Average impulse Top 10% Powered by BIP!
visibility 53visibility views 53 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/c0ee00499e&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2021Publisher:American Chemical Society (ACS) Funded by:[no funder available]Wiebke Alex; Patrick Lorenz; Christian Henkel; Timothy Clark; Andreas Hirsch; Dirk M. Guldi;doi: 10.1021/jacs.1c04322
pmid: 34958548
We describe for the first time the full reaction coordinate regarding the photoisomerization of red-absorbing norbornadienes (NBDs) to quadricyclanes (QCs). Our studies go beyond steady-state investigations by using an arsenal of time-resolved techniques. Importantly, the red absorption of NBDs is made possible by a different charge-transfer character; adjusting its strength enables control over the photoreversibility of the rearrangement. In the case of strong charge-transfer character (a weakly electron-withdrawing ester and a strongly electron-donating dimethylaniline), photoirradiation with visible light into the delocalized charge-transfer absorption of NBD affords QC reversibly. In stark contrast, UV photoirradiation into the NBD localized excited state leads to a photoinduced degradation and cannot be back-isomerized to NBD under any circumstances. If the charge-transfer character is weak (a weakly electron-withdrawing ester and a weakly electron-donating phenyl), reversibility is seen independently of the photoirradiation light.
Smithsonian figshare arrow_drop_down Smithsonian figshareArticle . 2021License: CC BY NCData sources: Bielefeld Academic Search Engine (BASE)Journal of the American Chemical SocietyArticle . 2021 . Peer-reviewedLicense: STM Policy #29Data sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1021/jacs.1c04322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesbronze 19 citations 19 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
more_vert Smithsonian figshare arrow_drop_down Smithsonian figshareArticle . 2021License: CC BY NCData sources: Bielefeld Academic Search Engine (BASE)Journal of the American Chemical SocietyArticle . 2021 . Peer-reviewedLicense: STM Policy #29Data sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1021/jacs.1c04322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2023 United KingdomPublisher:American Chemical Society (ACS) Funded by:SNSF | Understanding and Modelli..., SNSF | ABCD Antibodies: Recombin...SNSF| Understanding and Modelling Cryptic Binding Pockets for Biology and Drug Discovery ,SNSF| ABCD Antibodies: Recombinant antibodies for researchAuthors: Jacqueline C. Calderón; Passainte Ibrahim; Dorothea Gobbo; Francesco Luigi Gervasio; +1 AuthorsJacqueline C. Calderón; Passainte Ibrahim; Dorothea Gobbo; Francesco Luigi Gervasio; Timothy Clark;pmid: 37824365
We use enhanced-sampling simulations with an effective collective variable to study the activation of the β2-adrenergic receptor in the presence of ligands with different efficacy. The free-energy profiles are computed for the ligand-free (apo) receptor and binary (apo-receptor + G-protein α-subunit and receptor + ligand) and ternary complexes. The results are not only compatible with available experiments but also allow unprecedented structural insight into the nature of GPCR conformations along the activation pathway and their role in the activation mechanism. In particular, the simulations reveal an unexpected mode of action of partial agonists such as salmeterol and salbutamol that arises already in the binary complex without the G-protein. Specific differences in the polar interactions with residues in TM5, which are required to stabilize an optimal TM6 conformation that facilitates G-protein binding and receptor activation, play a major role in differentiating them from full agonists.
Journal of Chemical ... arrow_drop_down Journal of Chemical Information and ModelingArticle . 2023 . Peer-reviewedLicense: STM Policy #29Data sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1021/acs.jcim.3c00805&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen 2 citations 2 popularity Top 10% influence Average impulse Average Powered by BIP!
more_vert Journal of Chemical ... arrow_drop_down Journal of Chemical Information and ModelingArticle . 2023 . Peer-reviewedLicense: STM Policy #29Data sources: Crossrefadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1021/acs.jcim.3c00805&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Journal 2010 United Kingdom, FrancePublisher:Springer Science and Business Media LLC Authors: Timothy Clark; Timothy Clark;pmid: 20063173
A technique known as intensity filtering is introduced to select valence-like virtual orbitals for calculating the local electron affinity, EA(L). Intensity filtering allows EA(L) to be calculated using semiempirical molecular orbital techniques that include polarisation functions. Without intensity filtering, such techniques yield spurious EA(L) values that are dominated by the polarisation functions. As intensity filtering should also be applicable for ab initio or density functional theory calculations with large basis sets, it also makes EA(L) available for these techniques.
INRIA a CCSD electro... arrow_drop_down INRIA a CCSD electronic archive serverArticle . 2010Data sources: INRIA a CCSD electronic archive serverINRIA a CCSD electronic archive serverArticle . 2010Data sources: INRIA a CCSD electronic archive serverJournal of Molecular ModelingArticle . 2010 . Peer-reviewedLicense: Springer TDMData sources: CrossrefUniversity of Portsmouth: Portsmouth Research PortalArticle . 2010Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1007/s00894-009-0607-x&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 35 citations 35 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!
more_vert INRIA a CCSD electro... arrow_drop_down INRIA a CCSD electronic archive serverArticle . 2010Data sources: INRIA a CCSD electronic archive serverINRIA a CCSD electronic archive serverArticle . 2010Data sources: INRIA a CCSD electronic archive serverJournal of Molecular ModelingArticle . 2010 . Peer-reviewedLicense: Springer TDMData sources: CrossrefUniversity of Portsmouth: Portsmouth Research PortalArticle . 2010Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1007/s00894-009-0607-x&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu