• Energy Research

AbstractA greenhouse study was conducted to investigate the ability of four crops (wheat, corn, oilseed rape and soybean) to influence the degradation of bentazone, diclofop‐methyl, diuron, isoproturon and pendimethalin in soil. The present study showed that microbial biomass‐carbon was significantly higher in planted soils than in bulk soil, especially with wheat and corn, after several cropping cycles. The biomass in corn and soybean planted soils was adversely affected by bentazone but recovered after three cropping cycles. In wheat‐planted soils, diclofop‐methyl application resulted in persistent increase of the amount of microbial biomass. Bentazone did not show accelerated degradation even after five successive treatments, differing from diclofop‐methyl, for which two applications were sufficient to enhance significantly its rate of degradation. Enhanced degradation of diclofop‐methyl was even more pronounced in wheat‐planted soil. The rates of mineralisation of diuron, isoproturon and pendimethalin were not affected after the first cropping cycle, but were significantly increased in planted soils after five cropping cycles. The results confirm that plants may promote pesticide degradation in soil by stimulating biodegradation processes. In the case of diclofop‐methyl, stimulation of accelerated degradation was observed.© 2002 Society of Chemical Industry

A PCR-based molecular tool was developed to estimate the diversity of the catechol-degrading bacterial community in a coal wasteland heavily contaminated with PAHS. A degenerate primer pair specific to catA sequences was designed by multiple alignment of known sequences coding a key intermediate of the beta-ketoadiapate pathway degrading catechol, namely catechol 1,2-dioxygenase. The specificity of this primer pair was assessed in 21 pure strains by PCR and sequencing. Comparison of the 16S rDNA and catA phylogenies revealed an absence of congruence between these two genes. The primer set was able to amplify catA sequences in DNA extracts from an industrial soil highly contaminated with heavy metals and polycyclic aromatic hydrocarbons (PAHs). RFLP screening of the catA library (95 clones) yielded 32 RFLP families. All of the 43 clone sequences obtained exhibited 86% identity on average to known CatA. Phylogenetic analysis revealed that these CatA sequences were related to Actinobacteria, alpha-, beta- and gamma-Proteobacteria phyla and confirmed the absence of congruence with 16S rDNA sequences, which implies horizontal gene transfer of the cat gene cluster between soil microbiota. Our results suggest that the diversity of the catA bacterial community is maintained in highly contaminated soil.

AbstractWe report the development of quantitative competitive (QC) PCR assays for quantifying the 16S, 18S ribosomal and atzC genes in nucleic acids directly extracted from soil. QC‐PCR assays were standardised, calibrated and evaluated with an experimental study aiming to evaluate the impact of atrazine application on soil microflora. Comparison of QC‐PCR 16S and 18S results with those of soil microbial biomass showed that, following atrazine application, the microbial biomass was not affected and that the amount of 16S rDNA gene representing ‘bacteria’ increased transitorily, while the amount of 18S rDNA gene representing fungi decreased in soil. In addition, comparison of atzC QC‐PCR results with those of atrazine mineralisation revealed that, in response to atrazine treatment, the amount of atzC gene increased transitorily in soil pre‐treated with atrazine, suggesting that accelerated atrazine biodegradation in soil could be due to a transient increase in the size of the atrazine mineralising community.© 2003 Society of Chemical Industry

We assessed the spatial variability of isoproturon mineralization in relation to that of physicochemical and biological parameters in fifty soil samples regularly collected along a sampling grid delimited across a 0.36 ha field plot (40 x 90 m). Only faint relationships were observed between isoproturon mineralization and the soil pH, microbial C biomass, and organic nitrogen. Considerable spatial variability was observed for six of the nine parameters tested (isoproturon mineralization rates, organic nitrogen, genetic structure of the microbial communities, soil pH, microbial biomass and equivalent humidity). The map of isoproturon mineralization rates distribution was similar to that of soil pH, microbial biomass, and organic nitrogen but different from those of structure of the microbial communities and equivalent humidity. Geostatistics revealed that the spatial heterogeneity in the rate of degradation of isoproturon corresponded to that of soil pH and microbial biomass.

The insecticide chlordecone is a contaminant found in most of the banana plantations in the French West Indies. This study aims to search for fungal populations able to grow on it. An Andosol heavily contaminated with chlordecone, perfused for 1 year in a soil-charcoal system, was used to conduct enrichment cultures. A total of 103 fungal strains able to grow on chlordecone-mineral salt medium were isolated, purified, and deposited in the MIAE collection (Microorganismes d'Intérêt Agro-Environnemental, UMR Agroécologie, Institut National de la Recherche Agronomique, Dijon, France). Internal transcribed spacer sequencing revealed that all isolated strains belonged to the Ascomycota phylum and gathered in 11 genera: Metacordyceps, Cordyceps, Pochonia, Acremonium, Fusarium, Paecilomyces, Ophiocordyceps, Purpureocillium, Bionectria, Penicillium, and Aspergillus. Among predominant species, only one isolate, Fusarium oxysporum MIAE01197, was able to grow in a liquid culture medium that contained chlordecone as sole carbon source. Chlordecone increased F. oxysporum MIAE01197 growth rate, attesting for its tolerance to this organochlorine. Moreover, F. oxysporum MIAE01197 exhibited a higher EC50 value than the reference strain F. oxysporum MIAE00047. This further suggests its adaptation to chlordecone tolerance up to 29.2 mg l(-1). Gas chromatography-mass spectrometry (GC-MS) analysis revealed that 40 % of chlordecone was dissipated in F. oxysporum MIAE01197 suspension culture. No chlordecone metabolite was detected by GC-MS. However, weak amount of (14)CO2 evolved from (14)C10-chlordecone and (14)C10-metabolites were observed. Sorption of (14)C10-chlordecone onto fungal biomass followed a linear relationship (r (2) = 0.99) suggesting that it may also account for chlordecone dissipation in F. oxysporum MIAE01197 culture.

Global change, in particular climate change, will affect agriculture worldwide in many ways: increased drought or flooding amplitude and frequency, variable temperature increases, loss of natural depuration of waters, soil erosion, loss of soil carbon content, invasion by alien species, increased pest events, changes in plant phenology, increased sensitivity of crops to stress and diseases etc. (Fisher et al. 2005; Howden et al. 2007). These anticipated or even already occurring stresses raise concerns about the sustainability of production and the ability of agriculture to feed human populations. All these changes could lead to an increased use of pesticides (Kattwinkel et al. 2011). Moreover, demographic pressure continues to rise, in particular in tropical and sub-tropical regions, where greater threats to agriculture and food sustainability are anticipated by the Intergovernmental Panel on Climate Change (IPCC) (Easterling et al. 2007). These trends will certainly lead to mounting conflicts involving water uses (irrigation versus drinking water production or freshwater ecosystem maintenance, sanitation etc.) and food production. This appeals to an "ecologically intensive agriculture" (Griffon 2006), i.e. a sustainable agriculture providing ecosystem services more efficiently than today and causing fewer adverse impacts on the environment and water resources. With EU Directive 2009/128/EC (EC 2009a) enforcement, requesting Member States to adopt action plans aiming to reduce risks and impacts related to pesticide uses, there will be a focus in the public and political debates in Europe on achieving a more sustainable use of pesticides. This should consequently lead to a reduction of the risks or impacts of pesticides on the environment. In Europe, there is currently a strong focus on source (including dose) reduction. This approach may nevertheless be too restrictive if the goal is to reduce the agriculture footprint while maintaining or increasing yield. Depending on the chemical properties of pesticides as well as environmental factors, decreasing the amounts of pesticides applied to crops will not automatically produce a decrease in the risk to non-target species or water supply. How could society meet the challenge of the forthcoming climate change? What adaptations should be envisaged for agriculture/pesticide risk management (RM)? These changes will probably have a profound effect on agricultural systems (crop selection, farming practices etc.) and to a lesser extent influence the fate and effects of chemicals (Schiedek et al. 2007). These questions have been addressed by two European research networks, namely Euraqua (the European Network of Freshwater Research Organisations, http://www.euraqua.org/) and PEER (Partnership for European Environmental Research, http://www.peer.eu/), which organised a workshop aiming to identify research needs and strategies induced by these questions in October 2011 in Montpellier, France. The workshop's specific goals were to (1) discuss the pesticide risk assessment (RA) approach, its limitations (e.g.spatial scale and multi-stress situations), the connections between different policies (pesticide regulation and Water Framework Directive), the use of models, (2) review integrated practices and innovative technologies which could or are intended to reduce pesticides' environmental impacts and (3) contribute to the future research and development agenda. This review summarises the workshop discussions.

The dissolved organic matter (DOM) is the term used for organic components of natural origin present in the soil solution and is probably the most available C-source that primes microbial activity in subsoils. Contrasting effects of organic C components on pesticide degradation have been reported; however, most studies have used model organic compounds with compositions and concentrations which differ substantially from those found in the environment. Degradation of atrazine (AT) by Chelatobacter heintzii SalB was monitored in liquid batch assays in the absence or presence of well-defined model C compounds (glucose, gluconate and citrate) as model DOM (mDOM) or complex, less-defined, environmental DOM solutions (eDOM: isolated humic substances, soil and plant residue extracts) at environmentally relevant concentrations. Glucose significantly increased AT degradation rate by more than a factor of 8 at and above 2.5 mg C L( - 1). Optical density measurements showed that this stimulation is related to microbial growth. Gluconate and citrate had no effects unless at non-relevant concentrations (1,000 mg DOC L( - 1)) at which stimulations (gluconate) or inhibitions (citrate) were found. The effects of eDOM added at 10 mg DOC L( - 1) on AT degradation were generally small. The AT degradation time was reduced by factors 1.4-1.9 in the presence of humic acids and eDOM from soils amended with plant residues; however, no effects were found for fulvic acids or eDOM from a soil leachate solution or extracted from unamended peat or forest soil. In conclusion, DOM supplied as both mDOM and eDOM did not inhibit AT degradation at environmentally relevant concentrations, and stimulation can be found for selected DOM samples and this is partly related to its effect on growth.