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description Publicationkeyboard_double_arrow_right Article , Other literature type , Journal 2019 Netherlands, Spain, SpainPublisher:eLife Sciences Publications, Ltd Funded by:NSF | II-EN: Computational Enha...NSF| II-EN: Computational Enhancement of Analytical Metagenomics SystemsCynthia B Silveira; Antoni Luque; Ty NF Roach; Helena Villela; Adam Barno; Kevin Green; Brandon Reyes; Esther Rubio-Portillo; Tram Le; Spencer Mead; Mark Hatay; Mark JA Vermeij; Yuichiro Takeshita; Andreas Haas; Barbara Bailey; Forest Rohwer;The microbialization of coral reefs predicts that microbial oxygen consumption will cause reef deoxygenation. Here we tested this hypothesis by analyzing reef microbial and primary producer oxygen metabolisms. Metagenomic data and in vitro incubations of bacteria with primary producer exudates showed that fleshy algae stimulate incomplete carbon oxidation metabolisms in heterotrophic bacteria. These metabolisms lead to increased cell sizes and abundances, resulting in bacteria consuming 10 times more oxygen than in coral incubations. Experiments probing the dissolved and gaseous oxygen with primary producers and bacteria together indicated the loss of oxygen through ebullition caused by heterogenous nucleation on algae surfaces. A model incorporating experimental production and loss rates predicted that microbes and ebullition can cause the loss of up to 67% of gross benthic oxygen production. This study indicates that microbial respiration and ebullition are increasingly relevant to reef deoxygenation as reefs become dominated by fleshy algae.
Universiteit van Ams... arrow_drop_down Universiteit van Amsterdam: Digital Academic Repository (UvA DARE)Article . 2019Data sources: Bielefeld Academic Search Engine (BASE)DANS (Data Archiving and Networked Services)Article . 2019Data sources: DANS (Data Archiving and Networked Services)Recolector de Ciencia Abierta, RECOLECTAArticle . 2019Data sources: Recolector de Ciencia Abierta, RECOLECTAeLifeArticle . 2019License: CC BYData sources: Universiteit van Amsterdam Digital Academic RepositoryRepositorio Institucional de la Universidad de AlicanteArticle . 2019Data sources: Repositorio Institucional de la Universidad de Alicanteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.7554/elife.49114&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 20 citations 20 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
more_vert Universiteit van Ams... arrow_drop_down Universiteit van Amsterdam: Digital Academic Repository (UvA DARE)Article . 2019Data sources: Bielefeld Academic Search Engine (BASE)DANS (Data Archiving and Networked Services)Article . 2019Data sources: DANS (Data Archiving and Networked Services)Recolector de Ciencia Abierta, RECOLECTAArticle . 2019Data sources: Recolector de Ciencia Abierta, RECOLECTAeLifeArticle . 2019License: CC BYData sources: Universiteit van Amsterdam Digital Academic RepositoryRepositorio Institucional de la Universidad de AlicanteArticle . 2019Data sources: Repositorio Institucional de la Universidad de Alicanteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.7554/elife.49114&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Journal 2017 NetherlandsPublisher:Inderscience Publishers Authors: Salcedo-Sanz, S.; Muñoz-Bulnes, J.; Vermeij, M.J.A.;In this paper, we describe two new methods to address the model type selection problem (MTSP) based on modifications of the coral reefs optimisation algorithm (CRO). The effectiveness of these novel approaches is subsequently illustrated in a problem of energy demand estimation in Spain. First, we describe how coral species can be defined in the CRO algorithm, so each specie defines a competing model for the MTSP. Second, we propose another method to solve MTSPs by modifying the original CRO with a substrate layer, so that the different models considered can be encoded similarly. This second method to solve the MTSP simplifies the application of the CRO operators. Finally, we evaluate the performance of the two CRO-based algorithms by solving a MTSP consisting of the prediction of future energy demand from macro-economic data in Spain as a case study.
International Journa... arrow_drop_down International Journal of Bio-Inspired ComputationArticle . 2017Data sources: DANS (Data Archiving and Networked Services)Universiteit van Amsterdam: Digital Academic Repository (UvA DARE)Article . 2017Data sources: Bielefeld Academic Search Engine (BASE)International Journal of Bio-Inspired ComputationArticle . 2017 . Peer-reviewedData sources: CrossrefInternational Journal of Bio-Inspired ComputationArticle . 2017Data sources: Universiteit van Amsterdam Digital Academic Repositoryadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1504/ijbic.2017.086698&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu26 citations 26 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!
more_vert International Journa... arrow_drop_down International Journal of Bio-Inspired ComputationArticle . 2017Data sources: DANS (Data Archiving and Networked Services)Universiteit van Amsterdam: Digital Academic Repository (UvA DARE)Article . 2017Data sources: Bielefeld Academic Search Engine (BASE)International Journal of Bio-Inspired ComputationArticle . 2017 . Peer-reviewedData sources: CrossrefInternational Journal of Bio-Inspired ComputationArticle . 2017Data sources: Universiteit van Amsterdam Digital Academic Repositoryadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1504/ijbic.2017.086698&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu
description Publicationkeyboard_double_arrow_right Article , Other literature type , Journal 2019 Netherlands, Spain, SpainPublisher:eLife Sciences Publications, Ltd Funded by:NSF | II-EN: Computational Enha...NSF| II-EN: Computational Enhancement of Analytical Metagenomics SystemsCynthia B Silveira; Antoni Luque; Ty NF Roach; Helena Villela; Adam Barno; Kevin Green; Brandon Reyes; Esther Rubio-Portillo; Tram Le; Spencer Mead; Mark Hatay; Mark JA Vermeij; Yuichiro Takeshita; Andreas Haas; Barbara Bailey; Forest Rohwer;The microbialization of coral reefs predicts that microbial oxygen consumption will cause reef deoxygenation. Here we tested this hypothesis by analyzing reef microbial and primary producer oxygen metabolisms. Metagenomic data and in vitro incubations of bacteria with primary producer exudates showed that fleshy algae stimulate incomplete carbon oxidation metabolisms in heterotrophic bacteria. These metabolisms lead to increased cell sizes and abundances, resulting in bacteria consuming 10 times more oxygen than in coral incubations. Experiments probing the dissolved and gaseous oxygen with primary producers and bacteria together indicated the loss of oxygen through ebullition caused by heterogenous nucleation on algae surfaces. A model incorporating experimental production and loss rates predicted that microbes and ebullition can cause the loss of up to 67% of gross benthic oxygen production. This study indicates that microbial respiration and ebullition are increasingly relevant to reef deoxygenation as reefs become dominated by fleshy algae.
Universiteit van Ams... arrow_drop_down Universiteit van Amsterdam: Digital Academic Repository (UvA DARE)Article . 2019Data sources: Bielefeld Academic Search Engine (BASE)DANS (Data Archiving and Networked Services)Article . 2019Data sources: DANS (Data Archiving and Networked Services)Recolector de Ciencia Abierta, RECOLECTAArticle . 2019Data sources: Recolector de Ciencia Abierta, RECOLECTAeLifeArticle . 2019License: CC BYData sources: Universiteit van Amsterdam Digital Academic RepositoryRepositorio Institucional de la Universidad de AlicanteArticle . 2019Data sources: Repositorio Institucional de la Universidad de Alicanteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.7554/elife.49114&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 20 citations 20 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
more_vert Universiteit van Ams... arrow_drop_down Universiteit van Amsterdam: Digital Academic Repository (UvA DARE)Article . 2019Data sources: Bielefeld Academic Search Engine (BASE)DANS (Data Archiving and Networked Services)Article . 2019Data sources: DANS (Data Archiving and Networked Services)Recolector de Ciencia Abierta, RECOLECTAArticle . 2019Data sources: Recolector de Ciencia Abierta, RECOLECTAeLifeArticle . 2019License: CC BYData sources: Universiteit van Amsterdam Digital Academic RepositoryRepositorio Institucional de la Universidad de AlicanteArticle . 2019Data sources: Repositorio Institucional de la Universidad de Alicanteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.7554/elife.49114&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Journal 2017 NetherlandsPublisher:Inderscience Publishers Authors: Salcedo-Sanz, S.; Muñoz-Bulnes, J.; Vermeij, M.J.A.;In this paper, we describe two new methods to address the model type selection problem (MTSP) based on modifications of the coral reefs optimisation algorithm (CRO). The effectiveness of these novel approaches is subsequently illustrated in a problem of energy demand estimation in Spain. First, we describe how coral species can be defined in the CRO algorithm, so each specie defines a competing model for the MTSP. Second, we propose another method to solve MTSPs by modifying the original CRO with a substrate layer, so that the different models considered can be encoded similarly. This second method to solve the MTSP simplifies the application of the CRO operators. Finally, we evaluate the performance of the two CRO-based algorithms by solving a MTSP consisting of the prediction of future energy demand from macro-economic data in Spain as a case study.
International Journa... arrow_drop_down International Journal of Bio-Inspired ComputationArticle . 2017Data sources: DANS (Data Archiving and Networked Services)Universiteit van Amsterdam: Digital Academic Repository (UvA DARE)Article . 2017Data sources: Bielefeld Academic Search Engine (BASE)International Journal of Bio-Inspired ComputationArticle . 2017 . Peer-reviewedData sources: CrossrefInternational Journal of Bio-Inspired ComputationArticle . 2017Data sources: Universiteit van Amsterdam Digital Academic Repositoryadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1504/ijbic.2017.086698&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu26 citations 26 popularity Top 10% influence Top 10% impulse Top 10% Powered by BIP!
more_vert International Journa... arrow_drop_down International Journal of Bio-Inspired ComputationArticle . 2017Data sources: DANS (Data Archiving and Networked Services)Universiteit van Amsterdam: Digital Academic Repository (UvA DARE)Article . 2017Data sources: Bielefeld Academic Search Engine (BASE)International Journal of Bio-Inspired ComputationArticle . 2017 . Peer-reviewedData sources: CrossrefInternational Journal of Bio-Inspired ComputationArticle . 2017Data sources: Universiteit van Amsterdam Digital Academic Repositoryadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1504/ijbic.2017.086698&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu