• Energy Research

Significance Temperate trees originating from warmer localities usually grow faster and acclimate to winter later than trees of the same species from colder localities. However, when trees are selected for faster growth, are climatically adaptive genes and traits affected? Our research demonstrates a simple, sensitive, broadly applicable, and elusive approach to integrating complex polygenic variation into applied environmental management. We show that selective breeding increases allele frequencies of many trait-associated genes, and that alleles that increase most display strong genetic linkage and potential trade-offs among traits. Increasing tree growth while maintaining adaptation is essential to reforestation in a changing climate, but this may be challenging because trait-associated genetic variation that underpins climate adaptation is responsive to selection for tree growth.

The disciplines of evolutionary biology and plant and animal breeding have been intertwined throughout their development, with responses to artificial selection yielding insights into the action of natural selection and evolutionary biology providing statistical and conceptual guidance for modern breeding. Here we offer an evolutionary perspective on a grand challenge of the 21st century: feeding humanity in the face of climate change. We first highlight promising strategies currently under way to adapt crops to current and future climate change. These include methods to match crop varieties with current and predicted environments and to optimize breeding goals, management practices, and crop microbiomes to enhance yield and sustainable production. We also describe the promise of crop wild relatives and recent technological innovations such as speed breeding, genomic selection, and genome editing for improving environmental resilience of existing crop varieties or for developing new crops. Next, we discuss how methods and theory from evolutionary biology can enhance these existing strategies and suggest novel approaches. We focus initially on methods for reconstructing the evolutionary history of crops and their pests and symbionts, because such historical information provides an overall framework for crop-improvement efforts. We then describe how evolutionary approaches can be used to detect and mitigate the accumulation of deleterious mutations in crop genomes, identify alleles and mutations that underlie adaptation (and maladaptation) to agricultural environments, mitigate evolutionary trade-offs, and improve critical proteins. Continuing feedback between the evolution and crop biology communities will ensure optimal design of strategies for adapting crops to climate change.

Over the course of history, humans have moved crops from their regions of origin to new locations across the world. The social, cultural and economic drivers of these movements have generated differences not only between current distributions of crops and their climatic origins, but also between crop distributions and climate suitability for their production. Although these mismatches are particularly important to inform agricultural strategies on climate change adaptation, they have, to date, not been quantified consistently at the global level. Here, we show that the relationships between the distributions of 12 major food crops and climate suitability for their yields display strong variation globally. After investigating the role of biophysical, socio-economic and historical factors, we report that high-income world regions display a better match between crop distribution and climate suitability. In addition, although crops are farmed predominantly in the same climatic range as their wild progenitors, climate suitability is not necessarily higher there, a pattern that reflects the legacy of domestication history on current crop distribution. Our results reveal how far the global distribution of major crops diverges from their climatic optima and call for greater consideration of the multiple dimensions of the crop socio-ecological niche in climate change adaptive strategies.

Leaf ecophysiological traits related to carbon gain and resource use are expected to be under strong selection in desert annuals. We used comparative and phenotypic selection approaches to investigate the importance of leaf ecophysiological traits for Helianthus anomalus, a diploid annual sunflower species of hybrid origin that is endemic to active desert dunes. Comparisons were made within and among five genotypic classes: H. anomalus, its ancestral parent species (H. annuus and H. petiolaris), and two backcrossed populations of the parental species (designated BC2ann and BC2pet) representing putative ancestors of H. anomalus. Seedlings were transplanted into H. anomalus habitat at Little Sahara Dunes, Utah, and followed through a summer growing season for leaf ecophysiological traits, phenology, and fitness estimated as vegetative biomass. Helianthus anomalus had a unique combination of traits when compared to its ancestral parent species, suggesting that lower leaf nitrogen and greater leaf succulence might be adaptive. However, selection on leaf traits in H. anomalus favored larger leaf area and greater nitrogen, which was not consistent with the extreme traits of H. anomalus relative to its ancestral parents. Also contrary to expectation, current selection on the leaf traits in the backcross populations was not consistently similar to, or resulting in evolution toward, the current H. anomalus phenotype. Only the selection for greater leaf succulence in BC2ann and greater water-use efficiency in BC2pet would result in evolution toward the current H. anomalus phenotype. It was surprising that the action of phenotypic selection depended greatly on the genotypic class for these closely related sunflower hybrids grown in a common environment. We speculate that this may be due to either phenotypic correlations between measured and unmeasured but functionally related traits or due to the three genotypic classes experiencing the environment differently as a result of their differing morphology.

Quantitative trait locus (QTL) mapping has become an established and effective method for studying the genetic architecture of complex traits. In this report, we use a QTL mapping approach in combination with data from a large selection experiment in Arabidopsis thaliana to explore a response to selection of experimental populations with differentiated genetic backgrounds. Experimental populations with genetic backgrounds derived from ecotypes Landsberg and Niederzenz were exposed to multiple generations of fertility and viability selection. This selection resulted in phenotypic shifts in a number of life-history and fitness-related characters including early development time, flowering time, dry biomass, longevity, and fruit production. Quantitative trait loci were mapped for these traits and their positions were compared to previously characterized allele frequency changes in the experimental populations (Ungerer et al. 2003). Quantitative trait locus positions largely colocalized with genomic regions under strong and consistent selection in populations with differentiated genetic backgrounds, suggesting that alleles for these traits were selected similarly in differentiated genetic backgrounds. However, one QTL region exhibited a more variable response; being positively selected on one genetic background but apparently neutral in another. This study demonstrates how QTL mapping approaches can be combined with map-based population genetic data to study how selection acts on standing genetic variation in populations.

Les événements extrêmes, tels que ceux causés par le changement climatique, les chocs économiques ou géopolitiques et les épidémies de ravageurs ou de maladies, menacent la sécurité alimentaire mondiale. La complexité de la causalité, ainsi que la myriade de façons dont un événement, ou une séquence d'événements, crée des impacts en cascade et systémiques, posent des défis importants à la recherche sur les systèmes alimentaires et aux politiques. Pour identifier les risques prioritaires pour la sécurité alimentaire et les opportunités de recherche, nous avons demandé à des experts de divers domaines et régions géographiques de décrire les principales menaces pour la sécurité alimentaire mondiale au cours des deux prochaines décennies et de suggérer des questions et des lacunes de recherche clés sur ce sujet. Nous présentons ici une hiérarchisation des menaces à la sécurité alimentaire mondiale résultant d'événements extrêmes, ainsi que des questions de recherche émergentes qui mettent en évidence les défis conceptuels et pratiques qui existent dans la conception, l'adoption et la gouvernance de systèmes alimentaires résilients. Nous espérons que ces résultats aideront à orienter le financement de la recherche et les ressources vers les transformations du système alimentaire nécessaires pour aider la société à faire face aux principaux risques du système alimentaire et à l'insécurité alimentaire en cas d'événements extrêmes. Los eventos extremos, como los causados por el cambio climático, las crisis económicas o geopolíticas y las epidemias de plagas o enfermedades, amenazan la seguridad alimentaria mundial. La complejidad de la causalidad, así como las innumerables formas en que un evento, o una secuencia de eventos, crea impactos en cascada y sistémicos, plantea desafíos significativos para la investigación y las políticas de los sistemas alimentarios por igual. Para identificar los riesgos prioritarios para la seguridad alimentaria y las oportunidades de investigación, pedimos a expertos de una variedad de campos y geografías que describieran las amenazas clave para la seguridad alimentaria mundial en las próximas dos décadas y que sugirieran preguntas y brechas clave de investigación sobre este tema. Aquí, presentamos una priorización de las amenazas a la seguridad alimentaria mundial derivadas de eventos extremos, así como preguntas de investigación emergentes que resaltan los desafíos conceptuales y prácticos que existen para diseñar, adoptar y gobernar sistemas alimentarios resilientes. Esperamos que estos hallazgos ayuden a dirigir la financiación de la investigación y los recursos hacia las transformaciones del sistema alimentario necesarias para ayudar a la sociedad a abordar los principales riesgos del sistema alimentario y la inseguridad alimentaria en situaciones extremas. Extreme events, such as those caused by climate change, economic or geopolitical shocks, and pest or disease epidemics, threaten global food security. The complexity of causation, as well as the myriad ways that an event, or a sequence of events, creates cascading and systemic impacts, poses significant challenges to food systems research and policy alike. To identify priority food security risks and research opportunities, we asked experts from a range of fields and geographies to describe key threats to global food security over the next two decades and to suggest key research questions and gaps on this topic. Here, we present a prioritization of threats to global food security from extreme events, as well as emerging research questions that highlight the conceptual and practical challenges that exist in designing, adopting, and governing resilient food systems. We hope that these findings help in directing research funding and resources toward food system transformations needed to help society tackle major food system risks and food insecurity under extreme events. وتهدد الأحداث المتطرفة، مثل تلك الناجمة عن تغير المناخ والصدمات الاقتصادية أو الجيوسياسية وأوبئة الآفات أو الأمراض، الأمن الغذائي العالمي. إن تعقيد السببية، فضلاً عن الطرق التي لا تعد ولا تحصى التي يخلق بها الحدث، أو سلسلة من الأحداث، تأثيرات متتالية ومنهجية، تشكل تحديات كبيرة لبحوث وسياسات النظم الغذائية على حد سواء. لتحديد مخاطر الأمن الغذائي ذات الأولوية وفرص البحث، طلبنا من خبراء من مجموعة من المجالات والمناطق الجغرافية وصف التهديدات الرئيسية للأمن الغذائي العالمي على مدى العقدين المقبلين واقتراح أسئلة وثغرات بحثية رئيسية حول هذا الموضوع. هنا، نقدم أولوية للتهديدات التي يتعرض لها الأمن الغذائي العالمي من الأحداث المتطرفة، بالإضافة إلى أسئلة البحث الناشئة التي تسلط الضوء على التحديات المفاهيمية والعملية الموجودة في تصميم وتبني وإدارة النظم الغذائية المرنة. نأمل أن تساعد هذه النتائج في توجيه تمويل البحوث والموارد نحو تحولات النظام الغذائي اللازمة لمساعدة المجتمع على معالجة المخاطر الرئيسية للنظام الغذائي وانعدام الأمن الغذائي في ظل الأحداث المتطرفة.