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description Publicationkeyboard_double_arrow_right Article , Journal 2016Publisher:Oxford University Press (OUP) Funded by:NSF | EFRI-PSBR: Channeling Car...NSF| EFRI-PSBR: Channeling Carbon Flows in Algal Productions Systems from the Molecular to Bioprocessing ScalesCristal Zuñiga; Chien-Ting Li; Tyler Huelsman; Jennifer Levering; Daniel C. Zielinski; Brian O. McConnell; Christopher P. Long; Eric P. Knoshaug; Michael T. Guarnieri; Maciek R. Antoniewicz; Michael J. Betenbaugh; Karsten Zengler;The green microalga Chlorella vulgaris has been widely recognized as a promising candidate for biofuel production due to its ability to store high lipid content and its natural metabolic versatility. Compartmentalized genome-scale metabolic models constructed from genome sequences enable quantitative insight into the transport and metabolism of compounds within a target organism. These metabolic models have long been utilized to generate optimized design strategies for an improved production process. Here, we describe the reconstruction, validation, and application of a genome-scale metabolic model for C. vulgaris UTEX 395, iCZ843. The reconstruction represents the most comprehensive model for any eukaryotic photosynthetic organism to date, based on the genome size and number of genes in the reconstruction. The highly curated model accurately predicts phenotypes under photoautotrophic, heterotrophic, and mixotrophic conditions. The model was validated against experimental data and lays the foundation for model-driven strain design and medium alteration to improve yield. Calculated flux distributions under different trophic conditions show that a number of key pathways are affected by nitrogen starvation conditions, including central carbon metabolism and amino acid, nucleotide, and pigment biosynthetic pathways. Furthermore, model prediction of growth rates under various medium compositions and subsequent experimental validation showed an increased growth rate with the addition of tryptophan and methionine.
PLANT PHYSIOLOGY arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1104/pp.16.00593&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 93 citations 93 popularity Top 1% influence Top 10% impulse Top 10% Powered by BIP!
more_vert PLANT PHYSIOLOGY arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1104/pp.16.00593&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2022Publisher:Royal Society of Chemistry (RSC) Carlos Quiroz-Arita; Somnath Shinde; Sungwhan Kim; Eric Monroe; Anthe George; Jason Quinn; Nick J. Nagle; Eric P. Knoshaug; Jacob S. Kruger; Tao Dong; Philip T. Pienkos; Lieve M. L. Laurens; Ryan W. Davis;doi: 10.1039/d1se01230d
High-protein algae bioproduct system boundaries for environmental sustainability risk analysis.
Sustainable Energy &... arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/d1se01230d&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu6 citations 6 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
more_vert Sustainable Energy &... arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/d1se01230d&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2018Publisher:National Renewable Energy Laboratory - Data (NREL-DATA), Golden, CO (United States); National Renewable Energy Laboratory Wolfrum, Ed; Knoshaug, Eric; Laurens, Lieve; Harmon, Valerie; Dempster, Thomas; McGowan, John; Rosov, Theresa; Cardello, David; Arrowsmith, Sarah; Kempkes, Sarah; Bautista, Maria; Lundquist, Tryg; Crowe, Braden; Murawsky, Garrett; Nicolai, Eric; Rowe, Egan; Knurek, Emily; Javar, Reyna; Saracco Alvarez, Marcela; Schlosser, Steve; Riddle, Mary; Withstandley, Chris; Chen, Yongsheng; Van Ginkel, Steven; Igou, Thomas; Xu, Chunyan; Hu, Zixuan;doi: 10.7799/1400389
ATP3 Unified Field Study DataThe Algae Testbed Public-Private Partnership ATP3 was established with the goal of investigating open pond algae cultivation across different geographic climatic seasonal and operational conditions while setting the benchmark for quality data collection analysis and dissemination. Identical algae cultivation systems and data analysis methodologies were established at testbed sites across the continental United States and Hawaii. Within this framework the Unified Field Studies UFS were designed to characterize the cultivation of different algal strains during all 4 seasons across this testbed network. The dataset presented here is the complete curated climatic cultivation harvest and biomass composition data for each season at each site. These data enable others to do in-depth cultivation harvest techno-economic life cycle resource and predictive growth modeling analysis as well as develop crop protection strategies for the nascent algae industry.NREL Sub award Number DE-AC36-08-GO28308
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.7799/1400389&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu3 citations 3 popularity Average influence Average impulse Average Powered by BIP!
more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.7799/1400389&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Journal 2020Publisher:Royal Society of Chemistry (RSC) Andre Prates Pereira; Tao Dong; Eric P. Knoshaug; Nick Nagle; Ryan Spiller; Bonnie Panczak; Christopher J. Chuck; Philip T. Pienkos;doi: 10.1039/d0se00164c
An effective method for the production of fuels and chemicals from microalgae is to ferment the carbohydrate fraction, extract the lipids and convert the resulting solids through hydrothermal liquefaction (HTL).
Sustainable Energy &... arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/d0se00164c&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 9 citations 9 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
more_vert Sustainable Energy &... arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/d0se00164c&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu
description Publicationkeyboard_double_arrow_right Article , Journal 2016Publisher:Oxford University Press (OUP) Funded by:NSF | EFRI-PSBR: Channeling Car...NSF| EFRI-PSBR: Channeling Carbon Flows in Algal Productions Systems from the Molecular to Bioprocessing ScalesCristal Zuñiga; Chien-Ting Li; Tyler Huelsman; Jennifer Levering; Daniel C. Zielinski; Brian O. McConnell; Christopher P. Long; Eric P. Knoshaug; Michael T. Guarnieri; Maciek R. Antoniewicz; Michael J. Betenbaugh; Karsten Zengler;The green microalga Chlorella vulgaris has been widely recognized as a promising candidate for biofuel production due to its ability to store high lipid content and its natural metabolic versatility. Compartmentalized genome-scale metabolic models constructed from genome sequences enable quantitative insight into the transport and metabolism of compounds within a target organism. These metabolic models have long been utilized to generate optimized design strategies for an improved production process. Here, we describe the reconstruction, validation, and application of a genome-scale metabolic model for C. vulgaris UTEX 395, iCZ843. The reconstruction represents the most comprehensive model for any eukaryotic photosynthetic organism to date, based on the genome size and number of genes in the reconstruction. The highly curated model accurately predicts phenotypes under photoautotrophic, heterotrophic, and mixotrophic conditions. The model was validated against experimental data and lays the foundation for model-driven strain design and medium alteration to improve yield. Calculated flux distributions under different trophic conditions show that a number of key pathways are affected by nitrogen starvation conditions, including central carbon metabolism and amino acid, nucleotide, and pigment biosynthetic pathways. Furthermore, model prediction of growth rates under various medium compositions and subsequent experimental validation showed an increased growth rate with the addition of tryptophan and methionine.
PLANT PHYSIOLOGY arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1104/pp.16.00593&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 93 citations 93 popularity Top 1% influence Top 10% impulse Top 10% Powered by BIP!
more_vert PLANT PHYSIOLOGY arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1104/pp.16.00593&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article 2022Publisher:Royal Society of Chemistry (RSC) Carlos Quiroz-Arita; Somnath Shinde; Sungwhan Kim; Eric Monroe; Anthe George; Jason Quinn; Nick J. Nagle; Eric P. Knoshaug; Jacob S. Kruger; Tao Dong; Philip T. Pienkos; Lieve M. L. Laurens; Ryan W. Davis;doi: 10.1039/d1se01230d
High-protein algae bioproduct system boundaries for environmental sustainability risk analysis.
Sustainable Energy &... arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/d1se01230d&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu6 citations 6 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
more_vert Sustainable Energy &... arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/d1se01230d&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2018Publisher:National Renewable Energy Laboratory - Data (NREL-DATA), Golden, CO (United States); National Renewable Energy Laboratory Wolfrum, Ed; Knoshaug, Eric; Laurens, Lieve; Harmon, Valerie; Dempster, Thomas; McGowan, John; Rosov, Theresa; Cardello, David; Arrowsmith, Sarah; Kempkes, Sarah; Bautista, Maria; Lundquist, Tryg; Crowe, Braden; Murawsky, Garrett; Nicolai, Eric; Rowe, Egan; Knurek, Emily; Javar, Reyna; Saracco Alvarez, Marcela; Schlosser, Steve; Riddle, Mary; Withstandley, Chris; Chen, Yongsheng; Van Ginkel, Steven; Igou, Thomas; Xu, Chunyan; Hu, Zixuan;doi: 10.7799/1400389
ATP3 Unified Field Study DataThe Algae Testbed Public-Private Partnership ATP3 was established with the goal of investigating open pond algae cultivation across different geographic climatic seasonal and operational conditions while setting the benchmark for quality data collection analysis and dissemination. Identical algae cultivation systems and data analysis methodologies were established at testbed sites across the continental United States and Hawaii. Within this framework the Unified Field Studies UFS were designed to characterize the cultivation of different algal strains during all 4 seasons across this testbed network. The dataset presented here is the complete curated climatic cultivation harvest and biomass composition data for each season at each site. These data enable others to do in-depth cultivation harvest techno-economic life cycle resource and predictive growth modeling analysis as well as develop crop protection strategies for the nascent algae industry.NREL Sub award Number DE-AC36-08-GO28308
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.7799/1400389&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu3 citations 3 popularity Average influence Average impulse Average Powered by BIP!
more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.7799/1400389&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Journal 2020Publisher:Royal Society of Chemistry (RSC) Andre Prates Pereira; Tao Dong; Eric P. Knoshaug; Nick Nagle; Ryan Spiller; Bonnie Panczak; Christopher J. Chuck; Philip T. Pienkos;doi: 10.1039/d0se00164c
An effective method for the production of fuels and chemicals from microalgae is to ferment the carbohydrate fraction, extract the lipids and convert the resulting solids through hydrothermal liquefaction (HTL).
Sustainable Energy &... arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/d0se00164c&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 9 citations 9 popularity Top 10% influence Average impulse Top 10% Powered by BIP!
more_vert Sustainable Energy &... arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1039/d0se00164c&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu