• Energy Research

Habitat characteristics play a critical role in structuring reef fish communities subjected to fishing pressure. The line intercept transect (LIT) method provides an accurate quantitative description of the habitat, but in a very narrow corridor less than 1 m wide. Such a scale is poorly adapted to the wide-ranging species that account for a significant part of these assemblages. We developed an easy-to-use medium scale approach (MSA), based on a semi-quantitative description of 20 quadrats of 25 m 2 (500 m 2 in total). We then simulated virtual reef landscapes of different complexities in a computer, on which we computed MSA using different methods of calculation. These simulations allowed us to select the best method of calculation, obtaining quantitative estimates with acceptable accuracy (comparison with the original simulated landscapes: R 2 ranging from 0.986 to 0.997); they also showed that MSA is a more efficient estimator than LIT, generating percentage coverage estimates that are less variable. A mensurative experiment based on thirty 50-m transects, conducted by three teams of two divers, was used to empirically compare the two estimators and assess their ability to predict fish–habitat relationships. Three-factor multivariate ANOVAs (Teams, Reef, Methods) revealed again that LIT produced habitat composition estimates that were more variable than MSA. Canonical analyses conducted on fish biomass data successively aggregated by mobility patterns, trophic groups, and size classes, showed the higher predictive power of MSA habitat data over LIT. The MSA enriches the toolbox of methods available for reef habitat description at intermediate scale (b1000 m 2 ), between the scale where LIT is appropriate (b100 m 2 ) and the landscape approach (N1000 m 2 ).

The relationship between species and the functional diversity of assemblages is fundamental in ecology because it contains key information on functional redundancy, and functionally redundant ecosystems are thought to be more resilient, resistant and stable. However, this relationship is poorly understood and undocumented for species-rich coastal marine ecosystems. Here, we used underwater visual censuses to examine the patterns of functional redundancy for one of the most diverse vertebrate assemblages, the coral reef fishes of New Caledonia, South Pacific. First, we found that the relationship between functional and species diversity displayed a non-asymptotic power-shaped curve, implying that rare functions and species mainly occur in highly diverse assemblages. Second, we showed that the distribution of species amongst possible functions was significantly different from a random distribution up to a threshold of ∼90 species/transect. Redundancy patterns for each function further revealed that some functions displayed fast rates of increase in redundancy at low species diversity, whereas others were only becoming redundant past a certain threshold. This suggested non-random assembly rules and the existence of some primordial functions that would need to be fulfilled in priority so that coral reef fish assemblages can gain a basic ecological structure. Last, we found little effect of habitat on the shape of the functional-species diversity relationship and on the redundancy of functions, although habitat is known to largely determine assemblage characteristics such as species composition, biomass, and abundance. Our study shows that low functional redundancy is characteristic of this highly diverse fish assemblage, and, therefore, that even species-rich ecosystems such as coral reefs may be vulnerable to the removal of a few keystone species.

Difficulties in scaling up theoretical and experimental results have raised controversy over the consequences of biodiversity loss for the functioning of natural ecosystems. Using a global survey of reef fish assemblages, we show that in contrast to previous theoretical and experimental studies, ecosystem functioning (as measured by standing biomass) scales in a non-saturating manner with biodiversity (as measured by species and functional richness) in this ecosystem. Our field study also shows a significant and negative interaction between human population density and biodiversity on ecosystem functioning (i.e., for the same human density there were larger reductions in standing biomass at more diverse reefs). Human effects were found to be related to fishing, coastal development, and land use stressors, and currently affect over 75% of the world's coral reefs. Our results indicate that the consequences of biodiversity loss in coral reefs have been considerably underestimated based on existing knowledge and that reef fish assemblages, particularly the most diverse, are greatly vulnerable to the expansion and intensity of anthropogenic stressors in coastal areas.

Significance Marine reserves that prohibit fishing are a critical tool for sustaining coral reef ecosystems, yet it remains unclear how human impacts in surrounding areas affect the capacity of marine reserves to deliver key conservation benefits. Our global study found that only marine reserves in areas of low human impact consistently sustained top predators. Fish biomass inside marine reserves declined along a gradient of human impacts in surrounding areas; however, reserves located where human impacts are moderate had the greatest difference in fish biomass compared with openly fished areas. Reserves in low human-impact areas are required for sustaining ecological functions like high-order predation, but reserves in high-impact areas can provide substantial conservation gains in fish biomass.

AbstractFishes contribute substantially to energy and nutrient fluxes in reef ecosystems, but quantifying these roles is challenging. Here, we do so by synthesising a large compilation of fish metabolic‐rate data with a comprehensive database on reef‐fish community abundance and biomass. Individual‐level analyses support predictions of Metabolic Theory after accounting for significant family‐level variation, and indicate that some tropical reef fishes may already be experiencing thermal regimes at or near their temperature optima. Community‐level analyses indicate that total estimated respiratory fluxes of reef‐fish communities increase on average ~2‐fold from 22 to 28 °C. Comparisons of estimated fluxes among trophic groups highlight striking differences in resource use by communities in different regions, perhaps partly reflecting distinct evolutionary histories, and support the hypothesis that piscivores receive substantial energy subsidies from outside reefs. Our study demonstrates one approach to synthesising individual‐ and community‐level data to establish broad‐scale trends in contributions of biota to ecosystem dynamics.