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description Publicationkeyboard_double_arrow_right Article , Other literature type , Journal 2018 Germany, France, Netherlands, FrancePublisher:The Royal Society Sabina Rosca; Juha Suomalainen; Juha Suomalainen; Martin Herold; Harm Bartholomeus;Terrestrial laser scanning (TLS) and unmanned aerial vehicles (UAVs) equipped with digital cameras have attracted much attention from the forestry community as potential tools for forest inventories and forest monitoring. This research fills a knowledge gap about the viability and dissimilarities of using these technologies for measuring the top of canopy structure in tropical forests. In an empirical study with data acquired in a Guyanese tropical forest, we assessed the differences between top of canopy models (TCMs) derived from TLS measurements and from UAV imagery, processed using structure from motion. Firstly, canopy gaps lead to differences in TCMs derived from TLS and UAVs. UAV TCMs overestimate canopy height in gap areas and often fail to represent smaller gaps altogether. Secondly, it was demonstrated that forest change caused by logging can be detected by both TLS and UAV TCMs, although it is better depicted by the TLS. Thirdly, this research shows that both TLS and UAV TCMs are sensitive to the small variations in sensor positions during data collection. TCMs rendered from UAV data acquired over the same area at different moments are more similar (RMSE 0.11–0.63 m for tree height, and 0.14–3.05 m for gap areas) than those rendered from TLS data (RMSE 0.21–1.21 m for trees, and 1.02–2.48 m for gaps). This study provides support for a more informed decision for choosing between TLS and UAV TCMs to assess top of canopy in a tropical forest by advancing our understanding on: (i) how these technologies capture the top of the canopy, (ii) why their ability to reproduce the same model varies over repeated surveying sessions and (iii) general considerations such as the area coverage, costs, fieldwork time and processing requirements needed.
CGIAR CGSpace (Consu... arrow_drop_down CGIAR CGSpace (Consultative Group on International Agricultural Research)Article . 2021Full-Text: https://hdl.handle.net/10568/112365Data sources: Bielefeld Academic Search Engine (BASE)GFZ German Research Centre for GeosciencesArticle . 2018Data sources: GFZ German Research Centre for GeosciencesWageningen Staff PublicationsArticle . 2018License: CC BYData sources: Wageningen Staff PublicationsInterface FocusArticle . 2018 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefGFZpublic (German Research Centre for Geosciences, Helmholtz-Zentrum Potsdam)Article . 2018Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsfs.2017.0038&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen hybrid 51 citations 51 popularity Top 1% influence Top 10% impulse Top 1% Powered by BIP!
more_vert CGIAR CGSpace (Consu... arrow_drop_down CGIAR CGSpace (Consultative Group on International Agricultural Research)Article . 2021Full-Text: https://hdl.handle.net/10568/112365Data sources: Bielefeld Academic Search Engine (BASE)GFZ German Research Centre for GeosciencesArticle . 2018Data sources: GFZ German Research Centre for GeosciencesWageningen Staff PublicationsArticle . 2018License: CC BYData sources: Wageningen Staff PublicationsInterface FocusArticle . 2018 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefGFZpublic (German Research Centre for Geosciences, Helmholtz-Zentrum Potsdam)Article . 2018Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsfs.2017.0038&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2017Embargo end date: 07 Feb 2018 NetherlandsPublisher:Dryad Van Der Meij, Bob; Kooistra, L.; Suomalainen, J.M.; Barel, J.M.; de Deyn, G.B.;doi: 10.5061/dryad.75k1d
Plant responses to biotic and abiotic legacies left in soil by preceding plants is known as plant–soil feedback (PSF). PSF is an important mechanism to explain plant community dynamics and plant performance in natural and agricultural systems. However, most PSF studies are short-term and small-scale due to practical constraints for field-scale quantification of PSF effects, yet field experiments are warranted to assess actual PSF effects under less controlled conditions. Here we used unmanned aerial vehicle (UAV)-based optical sensors to test whether PSF effects on plant traits can be quantified remotely. We established a randomized agro-ecological field experiment in which six different cover crop species and species combinations from three different plant families (Poaceae, Fabaceae, Brassicaceae) were grown. The feedback effects on plant traits were tested in oat (Avena sativa) by quantifying the cover crop legacy effects on key plant traits: height, fresh biomass, nitrogen content, and leaf chlorophyll content. Prior to destructive sampling, hyperspectral data were acquired and used for calibration and independent validation of regression models to retrieve plant traits from optical data. Subsequently, for each trait the model with highest precision and accuracy was selected. We used the hyperspectral analyses to predict the directly measured plant height (RMSE = 5.12 cm, R2 = 0.79), chlorophyll content (RMSE = 0.11 g m−2, R2 = 0.80), N-content (RMSE = 1.94 g m−2, R2 = 0.68), and fresh biomass (RMSE = 0.72 kg m−2, R2 = 0.56). Overall the PSF effects of the different cover crop treatments based on the remote sensing data matched the results based on in situ measurements. The average oat canopy was tallest and its leaf chlorophyll content highest in response to legacy of Vicia sativa monocultures (100 cm, 0.95 g m−2, respectively) and in mixture with Raphanus sativus (100 cm, 1.09 g m−2, respectively), while the lowest values (76 cm, 0.41 g m−2, respectively) were found in response to legacy of Lolium perenne monoculture, and intermediate responses to the legacy of the other treatments. We show that PSF effects in the field occur and alter several important plant traits that can be sensed remotely and quantified in a non-destructive way using UAV-based optical sensors; these can be repeated over the growing season to increase temporal resolution. Remote sensing thereby offers great potential for studying PSF effects at field scale and relevant spatial-temporal resolutions which will facilitate the elucidation of the underlying mechanisms. van der Meij et al_Biogeosciences2017_dataThe experimental set-up, treatments, data collection and data analyses are thoroughly described in the Biogeoscience manuscript ‘Remote sensing of plant trait responses to field-based plant-soil feedback using UAV-based optical sensors’ doi:10.5194/bg-2016-452. Therefore we refer to the manuscript for detailed information an here we provide a brief summary to enable readers to follow what the data entail. The data were collected from a 2-year field experiment with plant rotations in a full factorial design. The plant treatments we focused on are legacy effects of the plant treatments (listed below) to the following oat crop. In this oat crop we quantified several plant traits both in situ and via remote sensing by use of UAV and hyperspectral and EGB sensors. The experiment was set-up in five randomized field blocks. We used part of the in situ collected data to parameterize the hyperspectral data based models and we validated these models with the other half of the field plots. Plant treatments Fa= fallow Lp= Lolium perenne Rs= Raphanus sativus Tr= Trifolium repens Vs= Vicia sativa Lp+Tr= 50:50 species mixture (relative to the monoculture seed densities) of the species Lp and Tr Rs+Vs= 50:50 species mixture (relative to the monoculture seed densities) of the species Rs and Vs
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5061/dryad.75k1d&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!
visibility 24visibility views 24 download downloads 13 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5061/dryad.75k1d&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu
description Publicationkeyboard_double_arrow_right Article , Other literature type , Journal 2018 Germany, France, Netherlands, FrancePublisher:The Royal Society Sabina Rosca; Juha Suomalainen; Juha Suomalainen; Martin Herold; Harm Bartholomeus;Terrestrial laser scanning (TLS) and unmanned aerial vehicles (UAVs) equipped with digital cameras have attracted much attention from the forestry community as potential tools for forest inventories and forest monitoring. This research fills a knowledge gap about the viability and dissimilarities of using these technologies for measuring the top of canopy structure in tropical forests. In an empirical study with data acquired in a Guyanese tropical forest, we assessed the differences between top of canopy models (TCMs) derived from TLS measurements and from UAV imagery, processed using structure from motion. Firstly, canopy gaps lead to differences in TCMs derived from TLS and UAVs. UAV TCMs overestimate canopy height in gap areas and often fail to represent smaller gaps altogether. Secondly, it was demonstrated that forest change caused by logging can be detected by both TLS and UAV TCMs, although it is better depicted by the TLS. Thirdly, this research shows that both TLS and UAV TCMs are sensitive to the small variations in sensor positions during data collection. TCMs rendered from UAV data acquired over the same area at different moments are more similar (RMSE 0.11–0.63 m for tree height, and 0.14–3.05 m for gap areas) than those rendered from TLS data (RMSE 0.21–1.21 m for trees, and 1.02–2.48 m for gaps). This study provides support for a more informed decision for choosing between TLS and UAV TCMs to assess top of canopy in a tropical forest by advancing our understanding on: (i) how these technologies capture the top of the canopy, (ii) why their ability to reproduce the same model varies over repeated surveying sessions and (iii) general considerations such as the area coverage, costs, fieldwork time and processing requirements needed.
CGIAR CGSpace (Consu... arrow_drop_down CGIAR CGSpace (Consultative Group on International Agricultural Research)Article . 2021Full-Text: https://hdl.handle.net/10568/112365Data sources: Bielefeld Academic Search Engine (BASE)GFZ German Research Centre for GeosciencesArticle . 2018Data sources: GFZ German Research Centre for GeosciencesWageningen Staff PublicationsArticle . 2018License: CC BYData sources: Wageningen Staff PublicationsInterface FocusArticle . 2018 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefGFZpublic (German Research Centre for Geosciences, Helmholtz-Zentrum Potsdam)Article . 2018Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsfs.2017.0038&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen hybrid 51 citations 51 popularity Top 1% influence Top 10% impulse Top 1% Powered by BIP!
more_vert CGIAR CGSpace (Consu... arrow_drop_down CGIAR CGSpace (Consultative Group on International Agricultural Research)Article . 2021Full-Text: https://hdl.handle.net/10568/112365Data sources: Bielefeld Academic Search Engine (BASE)GFZ German Research Centre for GeosciencesArticle . 2018Data sources: GFZ German Research Centre for GeosciencesWageningen Staff PublicationsArticle . 2018License: CC BYData sources: Wageningen Staff PublicationsInterface FocusArticle . 2018 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefGFZpublic (German Research Centre for Geosciences, Helmholtz-Zentrum Potsdam)Article . 2018Data sources: Bielefeld Academic Search Engine (BASE)add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsfs.2017.0038&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2017Embargo end date: 07 Feb 2018 NetherlandsPublisher:Dryad Van Der Meij, Bob; Kooistra, L.; Suomalainen, J.M.; Barel, J.M.; de Deyn, G.B.;doi: 10.5061/dryad.75k1d
Plant responses to biotic and abiotic legacies left in soil by preceding plants is known as plant–soil feedback (PSF). PSF is an important mechanism to explain plant community dynamics and plant performance in natural and agricultural systems. However, most PSF studies are short-term and small-scale due to practical constraints for field-scale quantification of PSF effects, yet field experiments are warranted to assess actual PSF effects under less controlled conditions. Here we used unmanned aerial vehicle (UAV)-based optical sensors to test whether PSF effects on plant traits can be quantified remotely. We established a randomized agro-ecological field experiment in which six different cover crop species and species combinations from three different plant families (Poaceae, Fabaceae, Brassicaceae) were grown. The feedback effects on plant traits were tested in oat (Avena sativa) by quantifying the cover crop legacy effects on key plant traits: height, fresh biomass, nitrogen content, and leaf chlorophyll content. Prior to destructive sampling, hyperspectral data were acquired and used for calibration and independent validation of regression models to retrieve plant traits from optical data. Subsequently, for each trait the model with highest precision and accuracy was selected. We used the hyperspectral analyses to predict the directly measured plant height (RMSE = 5.12 cm, R2 = 0.79), chlorophyll content (RMSE = 0.11 g m−2, R2 = 0.80), N-content (RMSE = 1.94 g m−2, R2 = 0.68), and fresh biomass (RMSE = 0.72 kg m−2, R2 = 0.56). Overall the PSF effects of the different cover crop treatments based on the remote sensing data matched the results based on in situ measurements. The average oat canopy was tallest and its leaf chlorophyll content highest in response to legacy of Vicia sativa monocultures (100 cm, 0.95 g m−2, respectively) and in mixture with Raphanus sativus (100 cm, 1.09 g m−2, respectively), while the lowest values (76 cm, 0.41 g m−2, respectively) were found in response to legacy of Lolium perenne monoculture, and intermediate responses to the legacy of the other treatments. We show that PSF effects in the field occur and alter several important plant traits that can be sensed remotely and quantified in a non-destructive way using UAV-based optical sensors; these can be repeated over the growing season to increase temporal resolution. Remote sensing thereby offers great potential for studying PSF effects at field scale and relevant spatial-temporal resolutions which will facilitate the elucidation of the underlying mechanisms. van der Meij et al_Biogeosciences2017_dataThe experimental set-up, treatments, data collection and data analyses are thoroughly described in the Biogeoscience manuscript ‘Remote sensing of plant trait responses to field-based plant-soil feedback using UAV-based optical sensors’ doi:10.5194/bg-2016-452. Therefore we refer to the manuscript for detailed information an here we provide a brief summary to enable readers to follow what the data entail. The data were collected from a 2-year field experiment with plant rotations in a full factorial design. The plant treatments we focused on are legacy effects of the plant treatments (listed below) to the following oat crop. In this oat crop we quantified several plant traits both in situ and via remote sensing by use of UAV and hyperspectral and EGB sensors. The experiment was set-up in five randomized field blocks. We used part of the in situ collected data to parameterize the hyperspectral data based models and we validated these models with the other half of the field plots. Plant treatments Fa= fallow Lp= Lolium perenne Rs= Raphanus sativus Tr= Trifolium repens Vs= Vicia sativa Lp+Tr= 50:50 species mixture (relative to the monoculture seed densities) of the species Lp and Tr Rs+Vs= 50:50 species mixture (relative to the monoculture seed densities) of the species Rs and Vs
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5061/dryad.75k1d&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!
visibility 24visibility views 24 download downloads 13 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5061/dryad.75k1d&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu