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# Nitrogen-fixing plants increase soil nitrogen and neighboring plant biomass, but decrease community diversity: A meta-analysis reveals the mediating role of soil texture [https://doi.org/10.5061/dryad.4qrfj6qk1](https://doi.org/10.5061/dryad.4qrfj6qk1) ## Description of the data and file structure This data file was constructed by gathering and extracting data from published scientific papers identified using a rigorous selection process (see manuscript for details on the selection process). The papers included in this data are identified within the primary dataset here, but also in the supplementary file of the manuscript. This dataset includes original manuscript information, data extractor, geographical and ecological data, and notation of any treatments or differences in groups, along with the means and error terms for each data point extracted. This is the raw data used for this paper. The 'yi' and 'vi' terms in the dataset are the individual log response ratio (lnRR) and variation, respectively. These are the terms used in all analyses presented in the final manuscript. There are moderators included in this dataset to account for and test for heterogeneity within the response of interest. However, given the nature of this type of analysis, there are quite a few missing data points from the various moderators; these are noted with an "N/A" in the dataset. The data file is titled "Ortiz-Wolf-2024-JoE.xslx" - this data file contains two spreadsheets: 'metadata' and 'dataset'. The 'metadata' spreadsheet describes each attribute (including abbreviations and units) in 'dataset'. The 'dataset' spreadsheet contains the independent effect sizes (Log Response Ratio) for each data point and the available moderator data there were used in our meta-analyses and used to generate figures presented in our manuscript and supplemental file. ## Sharing/Access Information NA Several recent regional studies have cast doubt on the widespread assumption that nitrogen-fixing plants (N-fixers) act as facilitators of neighboring plant communities. We conducted a meta-analysis to synthesize the effects of N-fixers on plant communities and to understand how ecological context moderates these effects. We analyzed studies that assessed paired effects of N-fixers and non-fixers on soil N, neighboring-plant (non-fixer) biomass, and plant community diversity; ecological moderators included climate, soil texture, and N-fixer growth form and invasive status. N-fixers led to higher soil N and neighboring plant biomass, but lower community diversity compared to non-fixers. The effect of N-fixers on neighboring plant biomass was strongly mediated by soil texture; N-fixer invasive status and growth form were also significant mediators of the facilitative effects of N-fixers. N-fixer effects lie on a continuum between facilitation and suppression that is moderated by intrinsic and extrinsic processes, and this analysis provides insight into how these factors moderate the effects of N-fixers. Overall, N-fixers facilitate neighbor biomass but suppress diversity, though high variation in these effects can be explained in part by ecological context.

Project: Coupled Model Intercomparison Project Phase 6 (CMIP6) datasets - These data have been generated as part of the internationally-coordinated Coupled Model Intercomparison Project Phase 6 (CMIP6; see also GMD Special Issue: http://www.geosci-model-dev.net/special_issue590.html). The simulation data provides a basis for climate research designed to answer fundamental science questions and serves as resource for authors of the Sixth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC-AR6). CMIP6 is a project coordinated by the Working Group on Coupled Modelling (WGCM) as part of the World Climate Research Programme (WCRP). Phase 6 builds on previous phases executed under the leadership of the Program for Climate Model Diagnosis and Intercomparison (PCMDI) and relies on the Earth System Grid Federation (ESGF) and the Centre for Environmental Data Analysis (CEDA) along with numerous related activities for implementation. The original data is hosted and partially replicated on a federated collection of data nodes, and most of the data relied on by the IPCC is being archived for long-term preservation at the IPCC Data Distribution Centre (IPCC DDC) hosted by the German Climate Computing Center (DKRZ). The project includes simulations from about 120 global climate models and around 45 institutions and organizations worldwide. Summary: These data include the subset used by IPCC AR6 WGI authors of the datasets originally published in ESGF for 'CMIP6.CMIP.CAS.FGOALS-f3-L' with the full Data Reference Syntax following the template 'mip_era.activity_id.institution_id.source_id.experiment_id.member_id.table_id.variable_id.grid_label.version'. The FGOALS-f3-L climate model, released in 2017, includes the following components: atmos: FAMIL2.2 (Cubed-sphere, c96; 360 x 180 longitude/latitude; 32 levels; top level 2.16 hPa), land: CLM4.0, ocean: LICOM3.0 (LICOM3.0, tripolar primarily 1deg; 360 x 218 longitude/latitude; 30 levels; top grid cell 0-10 m), seaIce: CICE4.0. The model was run by the Chinese Academy of Sciences, Beijing 100029, China (CAS) in native nominal resolutions: atmos: 100 km, land: 100 km, ocean: 100 km, seaIce: 100 km.

Replication code and data for the paper: "Machine Learning Predicts Large Scale Declines in Native Plant Phylogenetic Diversity." The following files are included in this repository: 1) R scripts (numbered 0 through 9) include replication code for data analysis 2) Datasets (6 zip folders) contain the data analyzed in the R scripts

This paper evidenced sensitivity of US immigration judge decisions to temperature in the city of arbitration on date of adjudication. This note serves to correct errors noted since publication. Main results from both the main linear specifications are qualitatively unchanged, with estimated treatment effects similar in size to the original and retaining statistical significance at conventional levels. Some secondary results lose significance with erosion of sample size. We also acknowledge the additional finding by Spamann (2020) with respect to external validity. Immigration judges in the United States.

Project: Coupled Model Intercomparison Project Phase 6 (CMIP6) datasets - These data have been generated as part of the internationally-coordinated Coupled Model Intercomparison Project Phase 6 (CMIP6; see also GMD Special Issue: http://www.geosci-model-dev.net/special_issue590.html). The simulation data provides a basis for climate research designed to answer fundamental science questions and serves as resource for authors of the Sixth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC-AR6). CMIP6 is a project coordinated by the Working Group on Coupled Modelling (WGCM) as part of the World Climate Research Programme (WCRP). Phase 6 builds on previous phases executed under the leadership of the Program for Climate Model Diagnosis and Intercomparison (PCMDI) and relies on the Earth System Grid Federation (ESGF) and the Centre for Environmental Data Analysis (CEDA) along with numerous related activities for implementation. The original data is hosted and partially replicated on a federated collection of data nodes, and most of the data relied on by the IPCC is being archived for long-term preservation at the IPCC Data Distribution Centre (IPCC DDC) hosted by the German Climate Computing Center (DKRZ). The project includes simulations from about 120 global climate models and around 45 institutions and organizations worldwide. Summary: These data include the subset used by IPCC AR6 WGI authors of the datasets originally published in ESGF for 'CMIP6.C4MIP.E3SM-Project.E3SM-1-1' with the full Data Reference Syntax following the template 'mip_era.activity_id.institution_id.source_id.experiment_id.member_id.table_id.variable_id.grid_label.version'. The E3SM 1.1 (Energy Exascale Earth System Model) climate model, released in 2019, includes the following components: aerosol: MAM4 with resuspension, marine organics, and secondary organics (same grid as atmos), atmos: EAM (v1.1, cubed sphere spectral-element grid; 5400 elements with p=3; 1 deg average grid spacing; 90 x 90 x 6 longitude/latitude/cubeface; 72 levels; top level 0.1 hPa), atmosChem: Troposphere specified oxidants for aerosols. Stratosphere linearized interactive ozone (LINOZ v2) (same grid as atmos), land: ELM (v1.1, same grid as atmos; active biogeochemistry using the Converging Trophic Cascade plant and soil carbon and nutrient mechanisms to represent carbon, nitrogen and phosphorus cycles), MOSART (v1.1, 0.5 degree latitude/longitude grid), ocean: MPAS-Ocean (v6.0, oEC60to30 unstructured SVTs mesh with 235160 cells and 714274 edges, variable resolution 60 km to 30 km; 60 levels; top grid cell 0-10 m), ocnBgchem: BEC (Biogeochemical Elemental Cycling model, NPZD-type with C/N/P/Fe/Si/O; same grid as ocean), seaIce: MPAS-Seaice (v6.0; same grid as ocean). The model was run by the LLNL (Lawrence Livermore National Laboratory, Livermore, CA 94550, USA); ANL (Argonne National Laboratory, Argonne, IL 60439, USA); BNL (Brookhaven National Laboratory, Upton, NY 11973, USA); LANL (Los Alamos National Laboratory, Los Alamos, NM 87545, USA); LBNL (Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA); ORNL (Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA); PNNL (Pacific Northwest National Laboratory, Richland, WA 99352, USA); SNL (Sandia National Laboratories, Albuquerque, NM 87185, USA). Mailing address: LLNL Climate Program, c/o David C. Bader, Principal Investigator, L-103, 7000 East Avenue, Livermore, CA 94550, USA (E3SM-Project) in native nominal resolutions: aerosol: 100 km, atmos: 100 km, atmosChem: 100 km, land: 100 km, ocean: 50 km, ocnBgchem: 50 km, seaIce: 50 km.

This project intends to use the Mount Denali ice core archive to develop the most comprehensive suite of North Pacific fire and summer climate proxy records since about 2500 years before present. Wildfire is a key component of summer climate in the North Pacific where wildfires are projected to increase with continued summer warming. Studies that combine paleorecords of summer climate and wildfire are therefore critically needed, especially in the North Pacific region where fire recurrence rate and decadal-to-centennial scale climate fluctuations occur over longer time periods than are covered by direct observations. The goal of the proposed research is to improve our understanding of relationships between summertime climate and wildfire activity, focusing especially on the Medieval Climate Anomaly (MCA), when regional temperatures were perhaps as warm as the 20th century. Recent advances now permit the measurement of new fire-related (pyrogenic) compounds in ice cores, enabling the development of a robust fire record capable of rigorous comparison with regional paleoclimate reconstructions.

Velocity-based macrorefugia for boreal passerine birds Citation for dataset -------------------- Stralberg, D. Velocity-based macrorefugia for boreal passerine birds. Boreal Avian Modelling Project. Edmonton, Alberta, Canada. DOI: 10.5281/zenodo.1299880 https://doi.org/10.5281/zenodo.1299880 Data layers ----------------- Refugia layers represent mid-century (2041-2070) and end-of-century (2071-2100) conditions for the SRES A2 emissions scenario at 4-km resolution ----------------- Combined index for 53 species (clipped to Brandt's boreal region): _refbrandt53_YYYYZZZZ Species-specific indices: XXXX_refYYYY where: YYYY = Time period (2050s or 2080s) ZZZZ = weighted or unweighted XXXX = Songbird Species Code (see Birdlookup.csv) Percentile values of refugia indices for mapping purposes 0.01 0.1 0.25 0.5 0.75 0.9 0.99 "2050s, weighted " 0.032 0.243 0.317 0.399 0.484 0.589 0.779 "2080s, weighted" 0.002 0.09 0.137 0.2 0.281 0.386 0.675 "2050s, unweighted" 0.006 0.108 0.159 0.218 0.292 0.358 0.421 "2080s, unweighted" 0.001 0.055 0.083 0.123 0.185 0.241 0.297 Projection information ------------------- """+proj=lcc +lat_1=49 +lat_2=77 +lat_0=0 +lon_0=-95 +x_0=0 +y_0=0 +ellps=GRS80 +units=m +no_defs""" ------------------- Projection LAMBERT Spheroid GRS80 Units METERS Zunits NO Xshift 0.0 Yshift 0.0 Parameters 49 0 0.0 /* 1st standard parallel 77 0 0.0 /* 2nd standard parallel -95 0 0.0 /* central meridian 0 0 0.0 /* latitude of projection's origin 0.0 /* false easting (meters) 0.0 /* false northing (meters)

This data set contains the essential files used as input for the analysis, intermediate files produced during the analysis, and the key output fields. The code of the analysis is available here: https://github.com/VUB-HYDR/2021_Thiery_etal_Science Input fields: - isimip.zip: Postprocessed ISIMIP2b simulation output. This data set is very similar to the data presented in Lange et al. (2020 Earth's Future) but includes selected additional impact models and scenarios (notably RCP8.5). This data set also includes the gridded population data. - GMT_50pc_manualoutput_4pathways.xlsx: Global mean temperature anomaly trajectories from the IPCC SR15 - wcde_data.xlsx: postprocessed cohort size data originally obtained from the Wittgenstein Centre Human Capital Data Explorer. - WPP2019_MORT_F16_1_LIFE_EXPECTANCY_BY_AGE_BOTH_SEXES.xlsx: Postprocessed life expectancy data originally obtained from the UNited Nations World Population Programme Intermediate files *only use if you're interested in reproducing the results*: - workspaces.zip: Postprocessed ISIMIP2b simulation output. These matlab workspaces contain data on land area annually exposed to extreme events which is stored in a format designed to speed up the analysis. - mw_isimip.mat: ISIMIP2 simulations metadata (e.g. model, gcm and rcp name per simulation) - mw_countries.mat: information on the countries used in the analysis (e.g. border polygon coordinates) - mw_exposure.mat: age-dependent exposure computed from the ISIMIP and population data - mw_exposure_pic.mat: pre-industrial control age-dependent exposure computed from the ISIMIP and population data - mw_exposure_pic_coldwaves.mat: pre-industrial control age-dependent exposure to coldwaves computed from the ISIMIP and population data Output of the analysis: - mw_output.mat: Matlab workspace containing all variables produced during the analysis presented in thepaper. Use this file if you wish to look up certain numbers or want to use the study results for further analysis.

Climate change is intensifying the hydrologic cycle globally, increasing both the size and frequency of extreme precipitation events, or deluges. Arid and semi-arid ecosystems are expected to be particularly responsive to this change because their ecological processes are largely driven by distinct soil moisture pulses. However, since soil moisture, air temperature, and plant phenology vary throughout the growing season, deluges will likely have differing impacts on these systems depending on when they occur. We conducted a field experiment to assess how the seasonal timing (early, middle, or late growing season) of a single deluge (70 mm precipitation event) altered key ecological processes in the semi-arid shortgrass steppe of North America. Regardless of timing, a single deluge stimulated most ecosystem processes, but a deluge at mid-season caused the greatest increase in soil respiration, canopy greenness, aboveground net primary production (ANPP), and growth and flowering of the dominant plant species (Bouteloua gracilis). In contrast, belowground net primary production (BNPP) was insensitive to deluge timing, with a consistent BNPP increase in all the deluge treatments that was almost twice as large as the ANPP response. This BNPP response was largely driven by enhanced root production at 10-20 cm, rather than 0-10 cm, soil depths. In a semi-arid ecosystem, a single deluge can have season-long impacts on many ecosystem processes, but responses can be mediated by event timing. Therefore, predicting responses of semi-arid ecosystems to more dynamic precipitation regimes, and subsequent impacts on the global carbon budget, will require knowledge of how deluge magnitude, frequency, and timing are being altered by climate change. These data are from an experimental field study that assessed the impact of deluge events and their timing on various ecological processes in the shortgrass steppe of Northeastern Colorado. The experiment period was the 2017 growing season (May - Sept). Included are the following datasets: Precipitation, air temperature, soil moisture, soil respiration, ANPP, BNPP, canopy greenness, plot species composition, B. gracilis leaf length, B. gracilis flowering, B. gracilis water potential.