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Image dataset used for a colour analysis of coral branches throughout a long-term marine heatwave emulation experiment using machine learning. Article: "Within population variability in coral heat tolerance indicates climate adaptation potential" by Humanes and Lachs et al. Code to analyse the dataset is found at 10.5281/zenodo.6256164. LL received funding from Natural Environment Research Council (NERC) ONE Planet Doctoral Training Partnership (NE/S007512/1).

Upwelling processes bring nutrient-rich waters from the deep ocean to the surface. Areas of upwelling are often associated with high productivity, offering great economic value in terms of fisheries. The sensitivity of spring/summer-time coastal upwelling systems to climate change has recently received a lot of attention. Several studies have suggested that their intensity may increase in the future while other authors have shown decreasing intensity in their equatorward portions. Yet, recent observations do not show robust evidence of this intensification. The Senegalo-Mauritanian upwelling system (SMUS) located at the southern edge of the north Atlantic system (12°N–20°N) and most active in winter/spring has been largely excluded from these studies. Here, the seasonal cycle of the SMUS and its response to climate change is investigated in the database of the Coupled Models Inter comparison Project Phase 5 (CMIP5). Upwelling magnitude and surface signature are characterized by several sea surface temperature and wind stress indices. We highlight the ability of the climate models to reproduce the system, as well as their biases. The simulations suggest that the intensity of the SMUS winter/spring upwelling will moderately decrease in the future, primarily because of a reduction of the wind forcing linked to a northward shift of Azores anticyclone and a more regional modulation of the low pressures found over Northwest Africa. The implications of such an upwelling reduction on the ecosystems and local communities exploiting them remains very uncertain.

# Data from: Blue Carbon Benefits from Global Saltmarsh Restoration [https://doi.org/10.5061/dryad.pc866t1vp](https://doi.org/10.5061/dryad.pc866t1vp) This README file was generated on 12th September 2023 by Victoria Mason. **Title of Dataset:** Blue carbon benefits from global saltmarsh restoration. **Author information:** * Victoria G. Mason, Bangor University/Royal Netherlands Institute for Sea Research (NIOZ), victoria.mason@nioz.nl (*Corresponding author*) * Annette Burden, UK Centre for Ecology & Hydrology * Graham Epstein, University of Exeter/University of Victoria * Lucy L. Jupe, Wildfowl & Wetlands Trust * Kevin A. Wood, Wildfowl & Wetlands Trust * Martin W. Skov, Bangor University **Summary of dataset:** These data include all data which were extracted or derived from relevant studies on global saltmarsh carbon storage and greenhouse gas flux. Data were obtained following screening of 29,182 peer reviewed published studies for relevant data, which were then extracted from 431 studies via text, tables and figures. We then used a meta-analysis to assess drivers of variation in global saltmarsh and greenhouse gas flux. * Date of literature search: 21st January 2022. * Date of data extraction: February - March 2022 * Literature search conducted via: Scopus + Web of Science ## Description of the data and file structure The contents of these data include: * **Full dataset (Aug2023\_GlobalCarbonReview\_FullDataset.xls):** All data extracted from 431 relevant studies and used in analysis. This includes a title page, metadata (with descriptions of column headers) and the full dataset. Response variables included: * Carbon stock * Percentage organic carbon * Bulk density * Sediment accretion rate * Carbon accumulation rate * Carbon dioxide flux * Methane flux * Nitrous oxide flux **\- Data on each included study \(Aug2023\_GlobalCarbonReview\_IncludedStudies\.xls\):** List of each study included in the final analysis, and its metadata. This includes a title page, metadata (with descriptions of column headers) and the dataset. All data include standard deviation (SD) and n (number of replicates) where provided by the original study, which were used to calculate Hedge's *g* effect sizes reported in the subsequent study. | Frequently used abbreviations: | | | ------------------------------ | --- | | C | carbon | | OC | organic carbon | | GHG | greenhouse gas | | bd | bulk density (g cm-3 dry sediment) | | Y/N | yes/no | | ref | reference | | lat | latitude | | long | longitude | | rest | restoration | | prec | precipitation | | sal | salinity | | acc | accretion | | resp | respiration | | SR | soil respiration (appears for CO2 flux) | | ER | ecosystem respiration (appears for CO2 flux) | | n | number of samples included in mean/standard deviation | | sd | standard deviation | All abbreviations used are outlined in the ‘Metadata’ worksheet of .xls files. **Data specific information for Aug2023\_GlobalCarbonReview\_FullDataset.xls:** Number of variables: 88 Number of cases/rows: 2055 Variables included: See 'Metadata' sheet **Data specific information for** **Aug2023\_GlobalCarbonReview\_IncludedStudies.xls:** Number of variables: 47 Number of cases/rows: 431 Variables included: See 'Metadata' sheet **Empty cells:** Cells are empty where data on that variable were not provided by the original study from which they were extracted. For example, where a study provided data on carbon stock variables, but not greenhouse gas flux. For further details, see the 'Metadata' sheets of each file. ## Sharing/Access information These data are available via Dryad, and described in ‘Blue Carbon Benefits from Global Saltmarsh Restoration’, in Global Change Biology. **DOI:** 10.1111/gcb.16943 Data were extracted from 431 published peer reviewed articles, the details of which can be found in the attached datasheets. Coastal saltmarshes are found globally, yet are 25–50% reduced compared to their historical cover. Restoration is incentivised by the promise that marshes are efficient storers of ‘blue’ carbon, although the claim lacks substantiation across global contexts. We synthesised data from 431 studies to quantify the benefits of saltmarsh restoration to carbon accumulation and greenhouse gas uptake. The results showed global marshes store approximately 1.41–2.44 Pg carbon. Restored marshes had very low greenhouse gas (GHG) fluxes and rapid carbon accumulation, resulting in a mean net accumulation rate of 64.70 t CO2e ha-1 y-1. Using this estimate and potential restoration rates, we find saltmarsh regeneration could result in 12.93–207.03 Mt CO2e accumulation per year, offsetting the equivalent of up to 0.51% global-energy-related CO2 emissions – a substantial amount, considering marshes represent <1% of Earth’s surface. Carbon accumulation rates and GHG fluxes varied contextually with temperature, rainfall and dominant vegetation, with the eastern costs of the USA and Australia being particular hotspots for carbon storage. Whilst the study reveals paucity of data for some variables and continents, suggesting a need for further research, the potential for saltmarsh restoration to offset carbon emissions is clear. The ability to facilitate natural carbon accumulation by saltmarshes now rests principally on the action of the management-policy community and on financial opportunities for supporting restoration.

Summary Past climatic fluctuations have played a major role in shaping the current plant biodiversity. Although harbouring an exceptional biota, oceanic islands have received little attention in studies on species demographic history and past vegetation patterns. We investigated the impact of past climatic changes on the effective population size of a tree (Coffea mauritiana) that is endemic to Reunion Island, located in the south‐western Indian Ocean (SWIO). Demographic changes were inferred using summary statistics calculated from genomic data. Using ecological niche modelling and the current distribution of genetic diversity, the paleodistribution of the species was also assessed. A reduction in the effective population size of C. mauritiana during the last glaciation maximum was inferred. The distribution of the species was reduced on the western side of the island, due to low rainfall. It appeared that a major reduction in rainfall and a slight temperature decrease prevailed in the SWIO. Our findings indicated that analyses on the current patterns of intraspecific genetic variations can efficiently contribute to past climatic changes characterisation in remote islands. Identifying area with higher resilience in oceanic islands could provide guidance in forest management and conservation faced to the global climate change.

Species distribution models (SDMs) are becoming an important tool for marine conservation and management. Yet while there is an increasing diversity and volume of marine biodiversity data for training SDMs, little practical guidance is available on how to leverage distinct data types to build robust models. We explored the effect of different data types on the fit, performance and predictive ability of SDMs by comparing models trained with four data types for a heavily exploited pelagic fish, the blue shark (Prionace glauca), in the Northwest Atlantic: two fishery-dependent (conventional mark-recapture tags, fisheries observer records) and two fishery-independent (satellite-linked electronic tags, pop-up archival tags). We found that all four data types can result in robust models, but differences among spatial predictions highlighted the need to consider ecological realism in model selection and interpretation regardless of data type. Differences among models were primarily attributed to biases in how each data type, and the associated representation of absences, sampled the environment and summarized the resulting species distributions. Outputs from model ensembles and a model trained on all pooled data both proved effective for combining inferences across data types and provided more ecologically realistic predictions than individual models. Our results provide valuable guidance for practitioners developing SDMs. With increasing access to diverse data sources, future work should further develop truly integrative modeling approaches that can explicitly leverage strengths of individual data types while statistically accounting for limitations, such as sampling biases.  Please see the README document ("README.md") and the accompanying published article: Braun, C. D., M. C. Arostegui, N. Farchadi, M. Alexander, P. Afonso, A. Allyn, S. J. Bograd, S. Brodie, D. P. Crear, E. F. Culhane, T. H. Curtis, E. L. Hazen, A. Kerney, N. Lezama-Ochoa, K. E. Mills, D. Pugh, N. Queiroz, J. D. Scott, G. B. Skomal, D. W. Sims, S. R. Thorrold, H. Welch, R. Young-Morse, R. Lewison. In press. Building use-inspired species distribution models: using multiple data types to examine and improve model performance. Ecological Applications. Accepted. DOI: < article DOI will be added when it is assigned >

1. Tidal stream energy converters (turbines) are currently being installed in tidally energetic coastal sites. However, there is currently a high level of uncertainty surrounding the potential environmental impacts on marine mammals. This is a key consenting risk to commercial introduction of tidal energy technology. Concerns derive primarily from the potential for injury to marine mammals through collisions with moving components of turbines. To understand the nature of this risk, information on how animals respond to tidal turbines is urgently required. 2. We measured the behaviour of harbour seals in response to acoustic playbacks of simulated tidal turbine sound within a narrow coastal channel subject to strong, tidally induced currents. This was carried out using data from animal-borne GPS tags and shore-based observations, which were analysed to quantify behavioural responses to the turbine sound. 3. Results showed that the playback state (silent control or turbine signal) was not a significant predictor of the overall number of seals sighted within the channel. 4. However, there was a localised impact of the turbine signal; tagged harbour seals exhibited significant spatial avoidance of the sound which resulted in a reduction in the usage by seals of between 11 and 41% at the playback location. The significant decline in usage extended to 500 m from the playback location at which usage decreased by between 1 and 9% during playback. 5. Synthesis and applications: This study provides important information for policy makers looking to assess the potential impacts of tidal turbines and advise on development of the tidal energy industry. Results showing that seals avoid tidal turbine sound suggest that a proportion of seals encountering tidal turbines will exhibit behavioural responses resulting in avoidance of physical injury; in practice, the empirical changes in usage can be used directly as avoidance rates when using collision risk models to predict the effects of tidal turbines on seals. There is now a clear need to measure how marine mammals behave in response to actual operating tidal turbines in the long term to learn whether marine mammals and tidal turbines can co-exist safely at the scales currently envisaged for the industry. JApEcol_Hastie_etal_observation_data_DryadLand based observer data (.xlsx) used in the analysis of seal responses to tidal turbine sounds. This is effectively counts of seals observed in the water during acoustic playbacks of tidal turbine sound and silent controls. Data were collected by a series of observers located on a clifftop overlooking the study area (Kyle Rhea, Isle of Skye, Scotland) README file is provided as a tab in the file.JApEcol_Hastie_etal_seal_telemetry_data_DryadHarbour seal telemetry data (.xlsx) used in the analysis of changes in usage with distance from the location of playbacks of tidal turbine sound. The data are regularised lat-lon locations from 10 individual harbour seals tagged with GPS telemetry devices. README is provided as a tab in the file.STIMweighted_J11_1hour_withRampSound file (.wav) used during playbacks of simulated tidal turbine sound to harbour seals to investigate avoidance responses. The file has a 10 second ramp at the start and end of the file, and is frequency weighted for use with a J11 underwater speaker.

Reconstruction of 1870-2018 ocean heat content (OHC_GF_1870_2018.nc) and thermosteric sea level (ThSL_GF_1870_2018.nc) using Green's functions. The method is described in Zanna et al., PNAS, 2019 This dataset is an update from the original published version with changes described here.

Abstract: The Northern Gannet Morus bossanus is an avian sentinel; the largest breeding seabird in Ireland and an obligate piscivore. Gannet eggs were collected from two island colonies off the east coast of Ireland, approximately 150km from each other, in locations with divergent history of industrialization (n = 10-20). Levels of potentially harmful contaminants including Polychlorinated biphenyls (PCBs), Polybrominated diphenyl ethers (PBDEs), Organochlorine pesticides (OCs), heavy metals and mercury were measured and differences of contaminant concentrations between different colonies compared. This is the first such study of contaminant levels in Gannet, or in any seabird egg in Ireland. Stable isotopes of carbon (d13C) and nitrogen (d15N) were measured in each egg to understand the influence of diet in contaminant levels detected. Significantly higher levels of PCBs, PBDEs and mercury were detected near Dublin (Ireland's industrialized capital city and location of its largest port) compared to Wexford. No differences were observed in levels of OCs and heavy metals between the two colonies. Stable isotope analysis demonstrated that Gannets in both locations occupy the same dietary niche excluding a difference in diet as the driver of differing contaminant levels in the two feeding areas. Though Gannets travel significant distances when foraging for food (~200km) tracking studies have shown that Gannets colonies maintain exclusive feeding areas with little overlap between neighbouring colonies. Differences between colonies within the feeding range of Gannets can therefore be detected despite Gannet's high dispersal ability. These results are in concurrence with elevated levels of contaminants in lower trophic level organisms that have been found in Dublin Bay compared to the rest of Ireland, indicating potential for Gannets as a higher trophic level indicator - though variability in their diet, including feeding on fishing discard, may lead to unacceptable levels of variability for an indicator species. Authors: Andrew Power��, Philip White��, Brendan McHugh��, Sinead Murphy��, Simon Berrow��, Moira Schlingermann��, Stephen Newton��, Linda O'Hea��, Brian Boyle��, Marissa Tannian��, Denis Crowley��, Evin McGovern��, Ian O'Connor�� ��Galway Mayo Institute of Technology, ��Marine Institute, ��BirdWatch Ireland