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Research data keyboard_double_arrow_right Dataset 2016Embargo end date: 01 Apr 2017Publisher:Dryad Russell, Debbie J. F.; Hastie, Gordon D.; Thompson, David; Janik, Vincent M.; Hammond, Philip S.; Scott-Hayward, Lindesay A. S.; Matthiopoulos, Jason; Jones, Esther L.; McConnell, Bernie J.; Russell, Debbie J.F.;doi: 10.5061/dryad.9r0gv
As part of global efforts to reduce dependence on carbon-based energy sources there has been a rapid increase in the installation of renewable energy devices. The installation and operation of these devices can result in conflicts with wildlife. In the marine environment, mammals may avoid wind farms that are under construction or operating. Such avoidance may lead to more time spent travelling or displacement from key habitats. A paucity of data on at-sea movements of marine mammals around wind farms limits our understanding of the nature of their potential impacts. Here, we present the results of a telemetry study on harbour seals Phoca vitulina in The Wash, south-east England, an area where wind farms are being constructed using impact pile driving. We investigated whether seals avoid wind farms during operation, construction in its entirety, or during piling activity. The study was carried out using historical telemetry data collected prior to any wind farm development and telemetry data collected in 2012 during the construction of one wind farm and the operation of another. Within an operational wind farm, there was a close-to-significant increase in seal usage compared to prior to wind farm development. However, the wind farm was at the edge of a large area of increased usage, so the presence of the wind farm was unlikely to be the cause. There was no significant displacement during construction as a whole. However, during piling, seal usage (abundance) was significantly reduced up to 25 km from the piling activity; within 25 km of the centre of the wind farm, there was a 19 to 83% (95% confidence intervals) decrease in usage compared to during breaks in piling, equating to a mean estimated displacement of 440 individuals. This amounts to significant displacement starting from predicted received levels of between 166 and 178 dB re 1 μPa(p-p). Displacement was limited to piling activity; within 2 h of cessation of pile driving, seals were distributed as per the non-piling scenario. Synthesis and applications. Our spatial and temporal quantification of avoidance of wind farms by harbour seals is critical to reduce uncertainty and increase robustness in environmental impact assessments of future developments. Specifically, the results will allow policymakers to produce industry guidance on the likelihood of displacement of seals in response to pile driving; the relationship between sound levels and avoidance rates; and the duration of any avoidance, thus allowing far more accurate environmental assessments to be carried out during the consenting process. Further, our results can be used to inform mitigation strategies in terms of both the sound levels likely to cause displacement and what temporal patterns of piling would minimize the magnitude of the energetic impacts of displacement. Wash_diagWash_diag.xlsx is the historic location data (pre windfarm construction) for the 19 individuals used in the analysis described in Russell et al.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2022Embargo end date: 30 Jan 2022Publisher:Dryad Authors:Barreaux, Antoine;
Barreaux, Antoine
Barreaux, Antoine in OpenAIREHigginson, Andrew;
Higginson, Andrew
Higginson, Andrew in OpenAIREBonsall, Michael;
English, Sinead;Bonsall, Michael
Bonsall, Michael in OpenAIREHere, we investigate how stochasticity and age-dependence in energy dynamics influence maternal allocation in iteroparous females. We develop a state-dependent model to calculate the optimal maternal allocation strategy with respect to maternal age and energy reserves, focusing on allocation in a single offspring at a time. We introduce stochasticity in energetic costs– in terms of the amount of energy required to forage successfully and individual differences in metabolism – and in feeding success. We systematically assess how allocation is influenced by age-dependence in energetic costs, feeding success, energy intake per successful feeding attempt, and environmentally-driven mortality. First, using stochastic dynamic programming, we calculate the optimal amount of reserves M that mothers allocate to each offspring depending on their own reserves R and age A. The optimal life history strategy is then the set of allocation decisions M(R, A) over the whole lifespan which maximizes the total reproductive success of distant descendants. Second, we simulated the life histories of 1000 mothers following the optimisation strategy and the reserves at the start of adulthood R1, the distribution of which was determined, the distribution of which was determined using an iterative procedure as described . For each individual, we calculated maternal allocation Mt, maternal reserves Rt, and relative allocation Mt⁄Rt at each time period t. The relative allocation helps us to understand how resources are partitioned between mother and offspring. Third, we consider how the optimal strategy varies when there is age-dependence in resource acquisition, energetic costs and survival. Specifically, we include varying scenarios with an age-dependent increase or a decrease with age in energetic costs (c_t), feeding success (q_t), energy intake per successful feeding attempt (y_t), and environmentally-driven extrinsic mortality rate (d_t) (Table 2). We consider the age-dependence of parameters one at a time or in pairs, altering the slope, intercept, or asymptote of the age-dependence (linear or asymptotic function). Our aim is to identify whether the observed reproductive senescence can arise from optimal maternal allocation. As such, we do not impose a decline in selection in later life as all offspring are equally valuable at all ages (for a given maternal allocation), and there are no mutations. For each scenario, we run the backward iteration process with these age-dependent functions, obtain the allocation strategy, and simulate the life history of 1000 individuals based on the novel strategy. We then fit quadratic and linear models to the reproduction of these 1000 individuals using the lme function, nlme package in R. For these models, the response variable is the maternal allocation Mt and explanatory variables are the time period t and t2 (for the quadratic fit only), with individual identity as a random term. We use likelihood ratio tests to compare linear and quadratic models using the anova function (package nlme) with the maximum-likelihood method. If the comparison is significant (p-value <0.05), we considered the quadratic model to have a better fit, otherwise the linear model is considered more parsimonious. We were particularly interested in identifying scenarios where the fit was quadratic with a negative quadratic term. For each scenario, the pseudo R2 conditional value (proportion of variance explained by the fixed and random terms, accounting for individual identity) is calculated to assess the goodness-of-fit of the lme model, on a scale from 0 to 1, using the “r.squared” function, package gabtool. All calculations and coding are done in R. Iteroparous parents face a trade-off between allocating current resources to reproduction versus maximizing survival to produce further offspring. Optimal allocation varies across age, and follows a hump-shaped pattern across diverse taxa, including mammals, birds and invertebrates. This non-linear allocation pattern lacks a general theoretical explanation, potentially because most studies focus on offspring number rather than quality and do not incorporate uncertainty or age-dependence in energy intake or costs. Here, we develop a life history model of maternal allocation in iteroparous animals. We identify the optimal allocation strategy in response to stochasticity when energetic costs, feeding success, energy intake, and environmentally-driven mortality risk are age-dependent. As a case study, we use tsetse, a viviparous insect that produces one offspring per reproductive attempt and relies on an uncertain food supply of vertebrate blood. Diverse scenarios generate a hump-shaped allocation: when energetic costs and energy intake increase with age; and also when energy intake decreases, and energetic costs increase or decrease. Feeding success and mortality risk have little influence on age-dependence in allocation. We conclude that ubiquitous evidence for age-dependence in these influential traits can explain the prevalence of non-linear maternal allocation across diverse taxonomic groups.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2018 Brazil, United States, Kazakhstan, United Statesadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2016Publisher:Zenodo Consists of a web crawl of unique URLs tweeted with the #YMMFire hashtag. #YMMFire collection took place from May 1-June 25, 2016. Unique URLs were extracted from the dataset, and harvested with Heritrix on August 31-September 2, 2017. This research was supported by a research grant -- 435-2015-0011 -- issued by Social Sciences and Humanities Research Council.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2024Embargo end date: 05 Mar 2024Publisher:Dryad This README file was generated on 2024-03-04 by Adriana Parra. ## GENERAL INFORMATION 1\. Title of Dataset: **Climate-limited vegetation change in the conterminous United States of America** 2\. Author Information A. First Author Contact Information Name: Adriana Parra Institution: University of Nevada, Reno Address: Reno, NV USA Email: adrianaparra@unr.edu B. Co-author Contact Information Name: Jonathan Greenberg Institution: University of Nevada, Reno Address: Reno, NV USA Email: jgreenberg@unr.edu 3\. Coverage period of the dataset: 1986-2018 4\. Geographic location of dataset: Conterminous United States 5\. Description: This dataset contains the input and the resulting rasters for the study “CLIMATE-LIMITED VEGETATION CHANGE IN THE CONTERMINOUS UNITED STATES OF AMERICA”, published in the Global Change Biology journal. The dataset includes a) the observed rates of vegetation change, b) the climate derived potential vegetation rates of change, c) the difference between potential and observed values and d) the identified climatic limiting factor. Additionally, the dataset includes a legend file for the identified climatic limiting factor rasters. ## SHARING/ACCESS INFORMATION 1\. Links to publications that cite or use the data: **Parra, A., & Greenberg, J. (2024). Climate-limited vegetation change in the conterminous United States of America. Global Change Biology, 30, e17204. [https://doi.org/10.1111/gcb.17204](https://doi.org/10.1111/gcb.17204)** 2\. Links to other publicly accessible locations of the data: None 3\. Links/relationships to ancillary data sets: None 4\. Was data derived from another source? Yes A. If yes, list source(s): "Vegetative Lifeform Cover from Landsat SR for CONUS" product publicly available in the ORNL DAAC (https://daac.ornl.gov/cgi-bin/dsviewer.pl?ds_id=1809) TerraClimate data catalog publicly available at the website https://www.climatologylab.org/terraclimate.html 5\. Recommended citation for this dataset: Parra, A., & Greenberg, J. (2024). Climate-limited vegetation change in the conterminous United States of America. Global Change Biology, 30, e17204. [https://doi.org/10.1111/gcb.17204](https://doi.org/10.1111/gcb.17204) ## DATA & FILE OVERVIEW This dataset contains 16 geotiff files, and one csv file. There are 4 geotiff files per each of the lifeform classes evaluated in this study: herbaceous, tree, shrub, and non-vegetation. The files corresponding to each lifeform class are indicated by the first two letters in the file name, HC indicates herbaceous cover, TC indicates tree cover, SC indicates shrub cover, and NC indicates non-vegetation cover. 1\. File List: a) Observed change: Trends of vegetation change between 1986 and 2018. b) Potential predict: Predicted rates of vegetation change form the climate limiting factor analysis. c) Potential observed difference: Difference between the potential and the observed vegetation rates of change. d) Limiting variable: Climate variable identified as the limiting factor for each pixel the conterminous United States. e) Legend of the Limiting variable raster All the geotiff files are stored as Float 32 type, and in CONUS Albers Equal Area coordinate system (EPSG:5070) The csv file included in the dataset is the legend for the limiting variable geotiff files. This file includes the name of the climate variable corresponding to each number in the limiting variable files, as well as information on the variable type and the corresponding time lag. 2\. Relationship between files, if important: None 3\. Additional related data collected that was not included in the current data package: None 4\. Are there multiple versions of the dataset? No A. If yes, name of file(s) that was updated: NA i. Why was the file updated? NA ii. When was the file updated? NA Input data We use the available data from the “Vegetative Lifeform Cover from Landsat SR for CONUS” product (https://daac.ornl.gov/cgi-bin/dsviewer.pl?ds_id=1809) to evaluate the changes in vegetation fractional cover. The information for the climate factors was derived from the TerraClimate data catalog (https://www.climatologylab.org/terraclimate.html). We downloaded data from this catalog for the period 1971 to 2018 for the following variables: minimum temperature (TMIN), precipitation (PPT), actual evapotranspiration (AET), potential evapotranspiration (PET), and climatic water deficit (DEF). Preprocessing of vegetation fractional cover data We resampled and aligned the maps of fractional cover using pixel averaging to the extent and resolution of the TerraClimate dataset (~ 4 km). Then, we calculated rates of lifeform cover change per pixel using the Theil-Sen slope analysis (Sen, 1968; Theil, 1992). Preprocessing of climate variables data To process the climate data, we defined a year time step as the months from July of one year to July of the next. Following this definition, we constructed annual maps of each climate variable for the years 1971 to 2018. The annual maps of each climate variable were further summarized per pixel, into mean and slope (calculated as the Theil-Sen slope) across one, two, three, four, five, ten-, and 15-year lags. Estimation of climate potential We constructed a final multilayer dataset of response and predictor variables for the CONUS including the resulting maps of fractional cover rate of change (four response variables), the mean and slope maps for the climate variables for all the time-lags (70 predictor variables), and the initial percent cover for each lifeform in the year 1986 (four predictor variables). We evaluated for each pixel in the CONUS which of the predictor variables produced the minimum potential rate of change in fractional cover for each lifeform class. To do that, we first calculated the 100% quantile hull of the distribution of each predictor variable against each response variable. To calculate the 100% quantile of the predictor variables’ distribution we divided the total range of each predictor variable into equal-sized bins. The size and number of bins were set specifically per variable due to differences in their data distribution. For each of the bins, we calculated the maximum value of the vegetation rate of change, which resulted in a lookup table with the lower and upper boundaries of each bin, and the associated maximum rate of change. We constructed a total of 296 lookup tables, one per lifeform class and predictor variable combination. The resulting lookup tables were used to construct spatially explicit maps of maximum vegetation rate of change from each of the predictor variable input rasters, and the final climate potential maps were constructed by stacking all the resulting maps per lifeform class and selecting for each pixel the minimum predicted rate of change and the predictor variable that produced that rate. Identifying climate-limited areas We defined climate-limited areas as the parts of the CONUS with little or no differences between the estimated climate potential and the observed rates of change in fractional cover. To identify these areas, we subtracted the raster of observed rates of change from the raster of climate potential for each lifeform class. In the study “CLIMATE-LIMITED VEGETATION CHANGE IN THE CONTERMINOUS UNITED STATES OF AMERICA”, published in the Global Change Biology journal, we evaluated the effects of climate conditions on vegetation composition and distribution in the conterminous United States (CONUS). To disentangle the direct effects of climate change from different non-climate factors, we applied "Liebig's law of the minimum" in a geospatial context, and determined the climate-limited potential for tree, shrub, herbaceous, and non-vegetation fractional cover change. We then compared these potential rates against observed change rates for the period 1986 to 2018 to identify areas of the CONUS where vegetation change is likely being limited by climatic conditions. This dataset contains the input and the resulting rasters for the study which include a) the observed rates of vegetation change, b) the climate derived potential vegetation rates of change, c) the difference between potential and observed values and d) the identified climatic limiting factor.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 18 Aug 2023Publisher:Zenodo This archive includes a minimal dataset needed to reproduce the analysis as well as a table (CSV) and spatial polygons (ESRI shapefile) of the resulting output from the publication: Hoecker, T.J., S. A. Parks, M. Krosby & S. Z. Dobrowski. 2023. Widespread exposure to altered fire regimes under 2°C warming is projected to transform conifer forests of the Western United States. Communications Earth and Environment. Publication abstract: Changes in wildfire frequency and severity are altering conifer forests and pose threats to biodiversity and natural climate solutions. Where and when feedbacks between vegetation and fire could mediate forest transformation are unresolved. Here, for the western U.S., we used climate analogs to measure exposure to fire-regime change; quantified the direction and spatial distribution of changes in burn severity; and intersected exposure with fire-resistance trait data. We measured exposure as multivariate dissimilarities between contemporary distributions of fire frequency, burn severity, and vegetation productivity and distributions supported by a 2 °C-warmer climate. We project exposure to fire-regime change across 65% of western US conifer forests and mean burn severity to ultimately decline across 63% because of feedbacks with forest productivity and fire frequency. We find that forests occupying disparate portions of climate space are vulnerable to projected fire-regime changes. Forests may adapt to future disturbance regimes, but trajectories remain uncertain.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2011Embargo end date: 29 Aug 2011Publisher:Harvard Dataverse Authors: E. Kopp, Robert; Golub, Alexander; O. Keohane, Nathaniel; Onda, Chikara;Drawing upon climate change damage functions previously proposed in the literature that we have calibrated to a common level of damages at 2.5 C, we examine the effect upon the social cost of carbon (SCC) of varying the specification of damages in a DICE-like integrated assessment model. In the absence of risk aversion, all of the SCC estimates but one agree within a factor of two. The effect of varying calibration damages is mildly sublinear. With a moderate level of risk aversion included, however, the differences among estimates grow greatly. By combining elements of different damage specifications and roughly taking into account uncertainty in calibration, we have constructed a composite damage function that attempts to approximate the range of uncertainty in climate change damages. In the absence of risk aversion, SCC values calculated with this function are in agreement with the standard quadratic DICE damage function; with a coefficient of relative risk aversion of 1.4, this damage function yields SCC values more than triple those of the standard function.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2019Embargo end date: 09 May 2019 United StatesPublisher:Data Repository for the University of Minnesota (DRUM) Knoll, Lesley, B.; Sharma, Sapna; Denfeld, Blaize A; Flaim, Giovanna;Hori, Yukari;
Magnuson, John J; Straile, Dietmar; Weyhenmeyer, Gesa A;Hori, Yukari
Hori, Yukari in OpenAIREdoi: 10.13020/3j5g-kc72
handle: 11299/202813
Lakes and rivers covered by seasonal ice are extensively used by humans. Although ice cover duration has been declining over the past 150 years for Northern Hemisphere lakes and rivers, we still know relatively little about how inland ice loss directly affects humans. Here we provide empirical examples that give quantitative evidence for a winter warming effect on a wide range of cultural ecosystem services. We show that in recent decades, warmer temperatures delayed the opening date of the James Bay winter ice road in northern Ontario, Canada and led to cancellations of religious celebrations (Lake Suwa, Japan and Lake Constance, Germany/Switzerland/Austria), an ice skating race on Lake M��laren, Sweden, and winter ice fishing tournaments in Central and Northern Minnesota. The years with no ice cover on Lake Suwa, Japan from 1443 - 2017. The years with ice cover on Lake Constance, Germany/Switzerland/Austria from 875 - 2018. The years with a normal Vikingar��nnet ice skating race, a modified route, or no race on Lake M��laren, Sweden from 1999 - 2017 as well as associated average winter air temperature. The years with canceled ice fishing tournaments in central and northern Minnesota, USA as well as associated average winter air temperature from 2005 - 2017. Road date openings of the James Bay winter ice road in northern Ontario, Canada and associated freezing degree days from 2005 - 2018.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Clinical Trial 2019 United StatesPublisher:ClinicalTrials.org A total of 170 participants were initially enrolled in the comprehensive behavioral weight loss intervention.In this study, investigators will conduct a follow-up visit 3 years after the completion of the intervention. Only participants who completed the behavioral weight loss intervention will be enrolled in this study. Participants will undergo testing of body weight, body composition, physical activity patterns, energy intake patterns, sleep patterns, resting metabolic rate, and total daily energy expenditure. This study is designed as an observational trial. The objective of this study is to follow-up with participants 3 years after completion of an 18-month comprehensive behavioral weight loss intervention. Outcomes of interest include change in body weight, body composition, physical activity, energy intake, and sleep. In addition, investigators will explore the associations between current physical activity, sleep, and energy intake patterns and body weight regulation.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!
more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 11 Oct 2023Publisher:Dryad Authors:Ding, Fangyu;
Ge, Honghan; Ma, Tian; Wang, Qian; +8 AuthorsDing, Fangyu
Ding, Fangyu in OpenAIREDing, Fangyu;
Ge, Honghan; Ma, Tian; Wang, Qian; Hao, Mengmeng; Li, Hao; Zhang, Xiao-Ai; Maude, Richard James; Wang, Liping; Jiang, Dong; Fang, Li-Qun; Liu, Wei;Ding, Fangyu
Ding, Fangyu in OpenAIRE# Data on: Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China [https://doi.org/10.5061/dryad.vdncjsz1z](https://doi.org/10.5061/dryad.vdncjsz1z) This dataset is the data used in the paper of Global change biology entitled "Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China". We use an integrated multi-model, multi-scenario framework to assess the impact of global climate change on SFTS disease in the mainland of China. ## Description of the data and file structure The predicted annual incidence of national SFTS cases with or without human population reduction under four RCPs under different climate change scenarios (RCP2.6, RCP4.5, RCP6.0, and RCP8.5) in the 2030s, 2050s, and 2080s. The value represents the annual incidence, and the unit is 105/year. The Dataset-1 file includes the predicted annual incidence of national SFTS cases with a fixed future human population under different climate change scenarios (RCP2.6, RCP4.5, RCP6.0, and RCP8.5) in the 2030s, 2050s, and 2080s. The Dataset-2 file includes the predicted annual incidence of national SFTS cases in the 2030s, 2050s, and 2080s with human population reduction (SSP2) under four RCPs. ## Sharing/Access information Data was derived from the following sources: * https://doi.org/10.1111/gcb.16969 This dataset is the data used in the paper of Global change biology entitled "Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China". We use an integrated multi-model, multi-scenario framework to assess the impact of global climate change on SFTS disease in the mainland of China. The SFTS incidence in three time periods (2030-2039, 2050-2059, 2080-2089) is predicted to be increased as compared to the 2010s in the context of various RCPs. The projected spatiotemporal dynamics of SFTS will be heterogeneous across provinces. Notably, we predict possible outbreaks in Xinjiang and Yunnan in the future, where only sporadic cases have been reported previously. These findings highlight the need for population awareness of SFTS in endemic regions, and enhanced monitoring in potential risk areas. See the Materials and methods section in the original paper. The code used in the statistical analyses are present in the paper and/or the Supplementary Materials.
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