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  • Authors: Jarrod D. Milshtein; Aman Preet Kaur; Matthew D. Casselman; Jeffrey A. Kowalski; +8 Authors

    Symmetric flow cell cycling of a soluble phenothiazine.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Birger Ulf Hansen; Marcin Jackowicz-Korczynski; Torsten Sachs; Peter M. Lafleur; +16 Authors

    Abstract. This paper aims to assess the spatial variability in the response of CO2 exchange to irradiance across the Arctic tundra during peak season using light response curve (LRC) parameters. This investigation allows us to better understand the future response of Arctic tundra under climatic change. Peak season data were collected during different years (between 1998 and 2010) using the micrometeorological eddy covariance technique from 12 circumpolar Arctic tundra sites, in the range of 64–74° N. The LRCs were generated for 14 days with peak net ecosystem exchange (NEE) using an NEE–irradiance model. Parameters from LRCs represent site-specific traits and characteristics describing the following: (a) NEE at light saturation (Fcsat), (b) dark respiration (Rd), (c) light use efficiency (α), (d) NEE when light is at 1000 μmol m−2 s−1 (Fc1000), (e) potential photosynthesis at light saturation (Psat) and (f) the light compensation point (LCP). Parameterization of LRCs was successful in predicting CO2 flux dynamics across the Arctic tundra. We did not find any trends in LRC parameters across the whole Arctic tundra but there were indications for temperature and latitudinal differences within sub-regions like Russia and Greenland. Together, leaf area index (LAI) and July temperature had a high explanatory power of the variance in assimilation parameters (Fcsat, Fc1000 and Psat, thus illustrating the potential for upscaling CO2 exchange for the whole Arctic tundra. Dark respiration was more variable and less correlated to environmental drivers than were assimilation parameters. This indicates the inherent need to include other parameters such as nutrient availability, substrate quantity and quality in flux monitoring activities.

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    Biogeosciences (BG)
    Article . 2014 . Peer-reviewed
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    https://doi.org/10.5194/bgd-11...
    Article . 2014 . Peer-reviewed
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    Article . 2014
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      Article . 2014
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      Article . 2014
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    Authors: Orrin Myers; Georges Kunstler; Jalene M. LaMontagne; James A. Lutz; +60 Authors

    AbstractIndirect climate effects on tree fecundity that come through variation in size and growth (climate-condition interactions) are not currently part of models used to predict future forests. Trends in species abundances predicted from meta-analyses and species distribution models will be misleading if they depend on the conditions of individuals. Here we find from a synthesis of tree species in North America that climate-condition interactions dominate responses through two pathways, i) effects of growth that depend on climate, and ii) effects of climate that depend on tree size. Because tree fecundity first increases and then declines with size, climate change that stimulates growth promotes a shift of small trees to more fecund sizes, but the opposite can be true for large sizes. Change the depresses growth also affects fecundity. We find a biogeographic divide, with these interactions reducing fecundity in the West and increasing it in the East. Continental-scale responses of these forests are thus driven largely by indirect effects, recommending management for climate change that considers multiple demographic rates.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Nature Communication...arrow_drop_down
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    Nature Communications
    Article . 2021 . Peer-reviewed
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    Authors: Omar Velázquez-Martínez; Johanna Valio; Annukka Santasalo-Aarnio; Markus Reuter; +1 Authors

    Lithium-ion batteries (LIBs) are currently one of the most important electrochemical energy storage devices, powering electronic mobile devices and electric vehicles alike. However, there is a remarkable difference between their rate of production and rate of recycling. At the end of their lifecycle, only a limited number of LIBs undergo any recycling treatment, with the majority go to landfills or being hoarded in households. Further losses of LIB components occur because the the state-of-the-art LIB recycling processes are limited to components with high economic value, e.g., Co, Cu, Fe, and Al. With the increasing popularity of concepts such as “circular economy” (CE), new LIB recycling systems have been proposed that target a wider spectrum of compounds, thus reducing the environmental impact associated with LIB production. This review work presents a discussion of the current practices and some of the most promising emerging technologies for recycling LIBs. While other authoritative reviews have focused on the description of recycling processes, the aim of the present was is to offer an analysis of recycling technologies from a CE perspective. Consequently, the discussion is based on the ability of each technology to recover every component in LIBs. The gathered data depicted a direct relationship between process complexity and the variety and usability of the recovered fractions. Indeed, only processes employing a combination of mechanical processing, and hydro- and pyrometallurgical steps seemed able to obtain materials suitable for LIB (re)manufacture. On the other hand, processes relying on pyrometallurgical steps are robust, but only capable of recovering metallic components.

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    Batteries
    Article . 2019 . Peer-reviewed
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    Batteries
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    Batteries
    Article . 2019
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    Aaltodoc Publication Archive
    Article . 2019 . Peer-reviewed
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      Batteries
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      Article . 2019 . Peer-reviewed
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    Authors: Marron, Df; Canovas, E.; Levy, My; Marti, A.; +7 Authors

    Nanostructured chalcopyrite compounds have recently been proposed as absorber materials for advanced photovoltaic devices. We have used photoreflectance (PR) to evaluate the impact of interdiffusion phenomena and the presence of native defects on the optoelectronic properties of such materials. Two model material systems have been analyzed: (i) thin layers of CuGaSe2 (Eg=1.7 eV) and CuInSe2 (1.0 eV) in a wide/low/wide bandgap stack that have been grown onto GaAs(0 0 1) substrates by metalorganic chemical vapor deposition (MOCVD); and (ii) thin In2S3 samples (Eg=2.0 eV) containing small amounts of Cu that have been grown by co-evaporation (PVD) intending to form CuxInySz (Eg1.5 eV) nanoclusters into the In2S3 matrix. The results have been analyzed according to the third-derivative functional form (TDFF). The valence band structure of selenide reference samples could be resolved and uneven interdiffusion of Ga and In in the layer stack could be inferred from the shift of PR-signatures. Hints of electronic confinement associated to the transitions at the low-gap region have been found in the selenide layer stack. Regarding the sulphide system, In2S3 is characterized by the presence of native deep states, as revealed by PR. The defect structure of the compound undergoes changes when incorporating Cu and no conclusive result about the presence of ternary clusters of a distinct phase could be drawn. Interdiffusion phenomena and the presence of native defects in chalcopyrites and related compounds will determine their potential use in advanced photovoltaic devices based on nanostructures.

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    Solar Energy Materials and Solar Cells
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    Recolector de Ciencia Abierta, RECOLECTA
    Article . 2010 . Peer-reviewed
    License: CC BY NC ND
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    Archivo Digital UPM
    Article . 2010
    License: CC BY NC ND
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    Solar Energy Materials and Solar Cells
    Article . 2010 . Peer-reviewed
    License: Elsevier TDM
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      Solar Energy Materials and Solar Cells
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      Recolector de Ciencia Abierta, RECOLECTA
      Article . 2010 . Peer-reviewed
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      Archivo Digital UPM
      Article . 2010
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      Solar Energy Materials and Solar Cells
      Article . 2010 . Peer-reviewed
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    Authors: Diefenthaler, Markus; Farhat, Abdullah; Verbytskyi, Andrii; Xu, Yuesheng;

    AbstractWe study the use of deep learning techniques to reconstruct the kinematics of the neutral current deep inelastic scattering (DIS) process in electron–proton collisions. In particular, we use simulated data from the ZEUS experiment at the HERA accelerator facility, and train deep neural networks to reconstruct the kinematic variables $$Q^2$$ Q 2 and x. Our approach is based on the information used in the classical construction methods, the measurements of the scattered lepton, and the hadronic final state in the detector, but is enhanced through correlations and patterns revealed with the simulated data sets. We show that, with the appropriate selection of a training set, the neural networks sufficiently surpass all classical reconstruction methods on most of the kinematic range considered. Rapid access to large samples of simulated data and the ability of neural networks to effectively extract information from large data sets, both suggest that deep learning techniques to reconstruct DIS kinematics can serve as a rigorous method to combine and outperform the classical reconstruction methods.

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    European Physical Journal C: Particles and Fields
    Article . 2022 . Peer-reviewed
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    https://dx.doi.org/10.48550/ar...
    Article . 2021
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      European Physical Journal C: Particles and Fields
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      https://dx.doi.org/10.48550/ar...
      Article . 2021
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    Authors: Jucker, Tommaso; Fischer, Fabian Jörg; Chave, Jérôme; Coomes, David; +115 Authors

    AbstractData capturing multiple axes of tree size and shape, such as a tree's stem diameter, height and crown size, underpin a wide range of ecological research—from developing and testing theory on forest structure and dynamics, to estimating forest carbon stocks and their uncertainties, and integrating remote sensing imagery into forest monitoring programmes. However, these data can be surprisingly hard to come by, particularly for certain regions of the world and for specific taxonomic groups, posing a real barrier to progress in these fields. To overcome this challenge, we developed the Tallo database, a collection of 498,838 georeferenced and taxonomically standardized records of individual trees for which stem diameter, height and/or crown radius have been measured. These data were collected at 61,856 globally distributed sites, spanning all major forested and non‐forested biomes. The majority of trees in the database are identified to species (88%), and collectively Tallo includes data for 5163 species distributed across 1453 genera and 187 plant families. The database is publicly archived under a CC‐BY 4.0 licence and can be access from: https://doi.org/10.5281/zenodo.6637599. To demonstrate its value, here we present three case studies that highlight how the Tallo database can be used to address a range of theoretical and applied questions in ecology—from testing the predictions of metabolic scaling theory, to exploring the limits of tree allometric plasticity along environmental gradients and modelling global variation in maximum attainable tree height. In doing so, we provide a key resource for field ecologists, remote sensing researchers and the modelling community working together to better understand the role that trees play in regulating the terrestrial carbon cycle.

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    CORE
    Article . 2022
    License: CC BY
    Data sources: CORE
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    Global Change Biology
    Article . 2022 . Peer-reviewed
    License: CC BY
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    Apollo
    Article . 2022
    License: rioxx All Rights Reserved
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    Wageningen Staff Publications
    Article . 2022
    License: CC BY
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    Apollo
    Article . 2022
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      CORE
      Article . 2022
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      Global Change Biology
      Article . 2022 . Peer-reviewed
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      Apollo
      Article . 2022
      License: rioxx All Rights Reserved
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      Wageningen Staff Publications
      Article . 2022
      License: CC BY
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      Apollo
      Article . 2022
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    Authors: Trevor G. Johnston; Petri-Jaan Lahtvee; Petri-Jaan Lahtvee; Zoel Parent; +7 Authors

    The three-dimensional (3D) printing of cell-containing polymeric hydrogels creates living materials (LMs), offering a platform for developing innovative technologies in areas like biosensors and biomanufacturing. The polymer material properties of cross-linkable F127-bis-urethane methacrylate (F127-BUM) allow reproducible 3D printing and stability in physiological conditions, making it suitable for fabricating LMs. Though F127-BUM-based LMs permit diffusion of solute molecules like glucose and ethanol, it remains unknown whether these are permissible for oxygen, essential for respiration. To determine oxygen permissibility, we quantified dissolved oxygen consumption by the budding yeast-laden F127-BUM-based LMs. Moreover, we obtained data on cell-retaining LMs, which allowed a direct comparison between LMs and suspension cultures. We further developed a highly reliable method to isolate cells from LMs for flow cytometry analysis, cell viability evaluation, and the purification of macromolecules. We found oxygen consumption heavily impaired inside LMs, indicating that yeast metabolism relies primarily on fermentation instead of respiration. Applying this finding to brewing, we observed a higher (3.7%) ethanol production using LMs than the traditional brewing process, indicating improved fermentation. Our study concludes that the present F127-BUM-based LMs are useful for microaerobic processes but developing aerobic bioprocesses will require further research.

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    ACS Applied Bio Materials
    Article . 2021 . Peer-reviewed
    License: STM Policy #29
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      ACS Applied Bio Materials
      Article . 2021 . Peer-reviewed
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    Authors: Ioannis A. Kougioumtzoglou; George D. Pasparakis; Michael Beer; Michael Beer; +2 Authors

    Abstract A methodology based on compressive sampling is developed for incomplete wind time-histories reconstruction and extrapolation in a single spatial dimension, as well as for related stochastic field statistics estimation. This relies on l 1 -norm minimization in conjunction with an adaptive basis re-weighting scheme. Indicatively, the proposed methodology can be employed for monitoring of wind turbine systems, where the objective relates to either reconstructing incomplete time-histories measured at specific points along the height of a turbine tower, or to extrapolating to other locations in the vertical dimension where sensors and measurement records are not available. Further, the methodology can be used potentially for environmental hazard modeling within the context of performance-based design optimization of structural systems. Unfortunately, a straightforward implementation of the aforementioned approach to account for two spatial dimensions is hindered by significant, even prohibitive in some cases, computational cost. In this regard, to address computational challenges associated with higher-dimensional domains, a methodology based on low rank matrices and nuclear norm minimization is developed next for wind field extrapolation in two spatial dimensions. The efficacy of the proposed methodologies is demonstrated by considering various numerical examples. These refer to reconstruction of wind time-histories with missing data compatible with a joint wavenumber-frequency power spectral density, as well as to extrapolation to various locations in the spatial domain.

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    Mechanical Systems and Signal Processing
    Article . 2022 . Peer-reviewed
    License: Elsevier TDM
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      Mechanical Systems and Signal Processing
      Article . 2022 . Peer-reviewed
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    Authors: Christoph Thomas; Christoph Thomas; George J. Kleinknecht; Anton Kruger; +5 Authors

    Budburst is a key adaptive trait that can help us understand how plants respond to a changing climate from the molecular to landscape scale. Despite this, acquisition of budburst data is constrained by a lack of information at the plant scale on the environmental stimuli associated with the release of bud dormancy. Additionally, to date, little effort has been devoted to phenotyping plants in natural populations due to the challenge of accounting for the effect of environmental variation. Nonetheless, natural selection operates on natural populations, and investigation of adaptive phenotypes in situ is warranted and can validate results from controlled laboratory experiments. To identify genomic effects on individual plant phenotypes in nature, environmental drivers must be concurrently measured, and characterized. Here, we designed and evaluated a sensor to meet these requirements for temperate woody plants. It was designed for use on a tree branch to measure the timing of budburst together with its key environmental drivers; temperature, and photoperiod. Specifically, we evaluated the sensor through independent corroboration with time-lapse photography and a suite of environmental sampling instruments. We also tested whether the presence of the device on a branch influenced the timing of budburst. Our results indicated the following: the temperatures measured by the budburst sensor's digital thermometer closely approximated the temperatures measured using a thermocouple touching plant tissue; the photoperiod detector measured ambient light with the same accuracy as did time lapse photography; the budburst sensor accurately detected the timing of budburst; and the sensor itself did not influence the budburst timing of Populus clones. Among other potential applications, future use of the sensor may provide plant phenotyping at the landscape level for integration with landscape genomics.

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    Frontiers in Plant Science
    Article . 2015 . Peer-reviewed
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    Frontiers in Plant Science
    Article
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    Frontiers in Plant Science
    Article . 2015
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      Frontiers in Plant Science
      Article . 2015 . Peer-reviewed
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      Frontiers in Plant Science
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      Article . 2015
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  • Authors: Jarrod D. Milshtein; Aman Preet Kaur; Matthew D. Casselman; Jeffrey A. Kowalski; +8 Authors

    Symmetric flow cell cycling of a soluble phenothiazine.

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    Authors: Birger Ulf Hansen; Marcin Jackowicz-Korczynski; Torsten Sachs; Peter M. Lafleur; +16 Authors

    Abstract. This paper aims to assess the spatial variability in the response of CO2 exchange to irradiance across the Arctic tundra during peak season using light response curve (LRC) parameters. This investigation allows us to better understand the future response of Arctic tundra under climatic change. Peak season data were collected during different years (between 1998 and 2010) using the micrometeorological eddy covariance technique from 12 circumpolar Arctic tundra sites, in the range of 64–74° N. The LRCs were generated for 14 days with peak net ecosystem exchange (NEE) using an NEE–irradiance model. Parameters from LRCs represent site-specific traits and characteristics describing the following: (a) NEE at light saturation (Fcsat), (b) dark respiration (Rd), (c) light use efficiency (α), (d) NEE when light is at 1000 μmol m−2 s−1 (Fc1000), (e) potential photosynthesis at light saturation (Psat) and (f) the light compensation point (LCP). Parameterization of LRCs was successful in predicting CO2 flux dynamics across the Arctic tundra. We did not find any trends in LRC parameters across the whole Arctic tundra but there were indications for temperature and latitudinal differences within sub-regions like Russia and Greenland. Together, leaf area index (LAI) and July temperature had a high explanatory power of the variance in assimilation parameters (Fcsat, Fc1000 and Psat, thus illustrating the potential for upscaling CO2 exchange for the whole Arctic tundra. Dark respiration was more variable and less correlated to environmental drivers than were assimilation parameters. This indicates the inherent need to include other parameters such as nutrient availability, substrate quantity and quality in flux monitoring activities.

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    Biogeosciences (BG)
    Article . 2014 . Peer-reviewed
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    Biogeosciences (BG)
    Article
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    https://doi.org/10.5194/bgd-11...
    Article . 2014 . Peer-reviewed
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    https://www.biogeosciences.net...
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    Biogeosciences
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    Biogeosciences
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Research Collection
    Article . 2014
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    Wageningen Staff Publications
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      Biogeosciences (BG)
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      https://doi.org/10.5194/bgd-11...
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      Biogeosciences
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      Biogeosciences
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      Article . 2014
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      Wageningen Staff Publications
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      Article . 2014
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    Authors: Orrin Myers; Georges Kunstler; Jalene M. LaMontagne; James A. Lutz; +60 Authors

    AbstractIndirect climate effects on tree fecundity that come through variation in size and growth (climate-condition interactions) are not currently part of models used to predict future forests. Trends in species abundances predicted from meta-analyses and species distribution models will be misleading if they depend on the conditions of individuals. Here we find from a synthesis of tree species in North America that climate-condition interactions dominate responses through two pathways, i) effects of growth that depend on climate, and ii) effects of climate that depend on tree size. Because tree fecundity first increases and then declines with size, climate change that stimulates growth promotes a shift of small trees to more fecund sizes, but the opposite can be true for large sizes. Change the depresses growth also affects fecundity. We find a biogeographic divide, with these interactions reducing fecundity in the West and increasing it in the East. Continental-scale responses of these forests are thus driven largely by indirect effects, recommending management for climate change that considers multiple demographic rates.

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    Nature Communications
    Article . 2021 . Peer-reviewed
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    Research Collection
    Article . 2021
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    Article . 2021
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      Article . 2021
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    Authors: Omar Velázquez-Martínez; Johanna Valio; Annukka Santasalo-Aarnio; Markus Reuter; +1 Authors

    Lithium-ion batteries (LIBs) are currently one of the most important electrochemical energy storage devices, powering electronic mobile devices and electric vehicles alike. However, there is a remarkable difference between their rate of production and rate of recycling. At the end of their lifecycle, only a limited number of LIBs undergo any recycling treatment, with the majority go to landfills or being hoarded in households. Further losses of LIB components occur because the the state-of-the-art LIB recycling processes are limited to components with high economic value, e.g., Co, Cu, Fe, and Al. With the increasing popularity of concepts such as “circular economy” (CE), new LIB recycling systems have been proposed that target a wider spectrum of compounds, thus reducing the environmental impact associated with LIB production. This review work presents a discussion of the current practices and some of the most promising emerging technologies for recycling LIBs. While other authoritative reviews have focused on the description of recycling processes, the aim of the present was is to offer an analysis of recycling technologies from a CE perspective. Consequently, the discussion is based on the ability of each technology to recover every component in LIBs. The gathered data depicted a direct relationship between process complexity and the variety and usability of the recovered fractions. Indeed, only processes employing a combination of mechanical processing, and hydro- and pyrometallurgical steps seemed able to obtain materials suitable for LIB (re)manufacture. On the other hand, processes relying on pyrometallurgical steps are robust, but only capable of recovering metallic components.

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    Batteries
    Article . 2019 . Peer-reviewed
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    Aaltodoc Publication Archive
    Article . 2019 . Peer-reviewed
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      Batteries
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      Batteries
      Article . 2019
      Data sources: DOAJ
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      Aaltodoc Publication Archive
      Article . 2019 . Peer-reviewed
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    Authors: Marron, Df; Canovas, E.; Levy, My; Marti, A.; +7 Authors

    Nanostructured chalcopyrite compounds have recently been proposed as absorber materials for advanced photovoltaic devices. We have used photoreflectance (PR) to evaluate the impact of interdiffusion phenomena and the presence of native defects on the optoelectronic properties of such materials. Two model material systems have been analyzed: (i) thin layers of CuGaSe2 (Eg=1.7 eV) and CuInSe2 (1.0 eV) in a wide/low/wide bandgap stack that have been grown onto GaAs(0 0 1) substrates by metalorganic chemical vapor deposition (MOCVD); and (ii) thin In2S3 samples (Eg=2.0 eV) containing small amounts of Cu that have been grown by co-evaporation (PVD) intending to form CuxInySz (Eg1.5 eV) nanoclusters into the In2S3 matrix. The results have been analyzed according to the third-derivative functional form (TDFF). The valence band structure of selenide reference samples could be resolved and uneven interdiffusion of Ga and In in the layer stack could be inferred from the shift of PR-signatures. Hints of electronic confinement associated to the transitions at the low-gap region have been found in the selenide layer stack. Regarding the sulphide system, In2S3 is characterized by the presence of native deep states, as revealed by PR. The defect structure of the compound undergoes changes when incorporating Cu and no conclusive result about the presence of ternary clusters of a distinct phase could be drawn. Interdiffusion phenomena and the presence of native defects in chalcopyrites and related compounds will determine their potential use in advanced photovoltaic devices based on nanostructures.

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    Solar Energy Materials and Solar Cells
    Article
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    Recolector de Ciencia Abierta, RECOLECTA
    Article . 2010 . Peer-reviewed
    License: CC BY NC ND
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    Archivo Digital UPM
    Article . 2010
    License: CC BY NC ND
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    Solar Energy Materials and Solar Cells
    Article . 2010 . Peer-reviewed
    License: Elsevier TDM
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      Solar Energy Materials and Solar Cells
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      Recolector de Ciencia Abierta, RECOLECTA
      Article . 2010 . Peer-reviewed
      License: CC BY NC ND
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      Archivo Digital UPM
      Article . 2010
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      Solar Energy Materials and Solar Cells
      Article . 2010 . Peer-reviewed
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    Authors: Diefenthaler, Markus; Farhat, Abdullah; Verbytskyi, Andrii; Xu, Yuesheng;

    AbstractWe study the use of deep learning techniques to reconstruct the kinematics of the neutral current deep inelastic scattering (DIS) process in electron–proton collisions. In particular, we use simulated data from the ZEUS experiment at the HERA accelerator facility, and train deep neural networks to reconstruct the kinematic variables $$Q^2$$ Q 2 and x. Our approach is based on the information used in the classical construction methods, the measurements of the scattered lepton, and the hadronic final state in the detector, but is enhanced through correlations and patterns revealed with the simulated data sets. We show that, with the appropriate selection of a training set, the neural networks sufficiently surpass all classical reconstruction methods on most of the kinematic range considered. Rapid access to large samples of simulated data and the ability of neural networks to effectively extract information from large data sets, both suggest that deep learning techniques to reconstruct DIS kinematics can serve as a rigorous method to combine and outperform the classical reconstruction methods.

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    European Physical Journal C: Particles and Fields
    Article . 2022 . Peer-reviewed
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    https://dx.doi.org/10.48550/ar...
    Article . 2021
    License: CC BY
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      European Physical Journal C: Particles and Fields
      Article . 2022 . Peer-reviewed
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      https://dx.doi.org/10.48550/ar...
      Article . 2021
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    Authors: Jucker, Tommaso; Fischer, Fabian Jörg; Chave, Jérôme; Coomes, David; +115 Authors

    AbstractData capturing multiple axes of tree size and shape, such as a tree's stem diameter, height and crown size, underpin a wide range of ecological research—from developing and testing theory on forest structure and dynamics, to estimating forest carbon stocks and their uncertainties, and integrating remote sensing imagery into forest monitoring programmes. However, these data can be surprisingly hard to come by, particularly for certain regions of the world and for specific taxonomic groups, posing a real barrier to progress in these fields. To overcome this challenge, we developed the Tallo database, a collection of 498,838 georeferenced and taxonomically standardized records of individual trees for which stem diameter, height and/or crown radius have been measured. These data were collected at 61,856 globally distributed sites, spanning all major forested and non‐forested biomes. The majority of trees in the database are identified to species (88%), and collectively Tallo includes data for 5163 species distributed across 1453 genera and 187 plant families. The database is publicly archived under a CC‐BY 4.0 licence and can be access from: https://doi.org/10.5281/zenodo.6637599. To demonstrate its value, here we present three case studies that highlight how the Tallo database can be used to address a range of theoretical and applied questions in ecology—from testing the predictions of metabolic scaling theory, to exploring the limits of tree allometric plasticity along environmental gradients and modelling global variation in maximum attainable tree height. In doing so, we provide a key resource for field ecologists, remote sensing researchers and the modelling community working together to better understand the role that trees play in regulating the terrestrial carbon cycle.

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    CORE
    Article . 2022
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    Global Change Biology
    Article . 2022 . Peer-reviewed
    License: CC BY
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    Apollo
    Article . 2022
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    Wageningen Staff Publications
    Article . 2022
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    Apollo
    Article . 2022
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      Global Change Biology
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      Apollo
      Article . 2022
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      Wageningen Staff Publications
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      Article . 2022
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    Authors: Trevor G. Johnston; Petri-Jaan Lahtvee; Petri-Jaan Lahtvee; Zoel Parent; +7 Authors

    The three-dimensional (3D) printing of cell-containing polymeric hydrogels creates living materials (LMs), offering a platform for developing innovative technologies in areas like biosensors and biomanufacturing. The polymer material properties of cross-linkable F127-bis-urethane methacrylate (F127-BUM) allow reproducible 3D printing and stability in physiological conditions, making it suitable for fabricating LMs. Though F127-BUM-based LMs permit diffusion of solute molecules like glucose and ethanol, it remains unknown whether these are permissible for oxygen, essential for respiration. To determine oxygen permissibility, we quantified dissolved oxygen consumption by the budding yeast-laden F127-BUM-based LMs. Moreover, we obtained data on cell-retaining LMs, which allowed a direct comparison between LMs and suspension cultures. We further developed a highly reliable method to isolate cells from LMs for flow cytometry analysis, cell viability evaluation, and the purification of macromolecules. We found oxygen consumption heavily impaired inside LMs, indicating that yeast metabolism relies primarily on fermentation instead of respiration. Applying this finding to brewing, we observed a higher (3.7%) ethanol production using LMs than the traditional brewing process, indicating improved fermentation. Our study concludes that the present F127-BUM-based LMs are useful for microaerobic processes but developing aerobic bioprocesses will require further research.

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    ACS Applied Bio Materials
    Article . 2021 . Peer-reviewed
    License: STM Policy #29
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      ACS Applied Bio Materials
      Article . 2021 . Peer-reviewed
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    Authors: Ioannis A. Kougioumtzoglou; George D. Pasparakis; Michael Beer; Michael Beer; +2 Authors

    Abstract A methodology based on compressive sampling is developed for incomplete wind time-histories reconstruction and extrapolation in a single spatial dimension, as well as for related stochastic field statistics estimation. This relies on l 1 -norm minimization in conjunction with an adaptive basis re-weighting scheme. Indicatively, the proposed methodology can be employed for monitoring of wind turbine systems, where the objective relates to either reconstructing incomplete time-histories measured at specific points along the height of a turbine tower, or to extrapolating to other locations in the vertical dimension where sensors and measurement records are not available. Further, the methodology can be used potentially for environmental hazard modeling within the context of performance-based design optimization of structural systems. Unfortunately, a straightforward implementation of the aforementioned approach to account for two spatial dimensions is hindered by significant, even prohibitive in some cases, computational cost. In this regard, to address computational challenges associated with higher-dimensional domains, a methodology based on low rank matrices and nuclear norm minimization is developed next for wind field extrapolation in two spatial dimensions. The efficacy of the proposed methodologies is demonstrated by considering various numerical examples. These refer to reconstruction of wind time-histories with missing data compatible with a joint wavenumber-frequency power spectral density, as well as to extrapolation to various locations in the spatial domain.

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    Mechanical Systems and Signal Processing
    Article . 2022 . Peer-reviewed
    License: Elsevier TDM
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      Mechanical Systems and Signal Processing
      Article . 2022 . Peer-reviewed
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    Authors: Christoph Thomas; Christoph Thomas; George J. Kleinknecht; Anton Kruger; +5 Authors

    Budburst is a key adaptive trait that can help us understand how plants respond to a changing climate from the molecular to landscape scale. Despite this, acquisition of budburst data is constrained by a lack of information at the plant scale on the environmental stimuli associated with the release of bud dormancy. Additionally, to date, little effort has been devoted to phenotyping plants in natural populations due to the challenge of accounting for the effect of environmental variation. Nonetheless, natural selection operates on natural populations, and investigation of adaptive phenotypes in situ is warranted and can validate results from controlled laboratory experiments. To identify genomic effects on individual plant phenotypes in nature, environmental drivers must be concurrently measured, and characterized. Here, we designed and evaluated a sensor to meet these requirements for temperate woody plants. It was designed for use on a tree branch to measure the timing of budburst together with its key environmental drivers; temperature, and photoperiod. Specifically, we evaluated the sensor through independent corroboration with time-lapse photography and a suite of environmental sampling instruments. We also tested whether the presence of the device on a branch influenced the timing of budburst. Our results indicated the following: the temperatures measured by the budburst sensor's digital thermometer closely approximated the temperatures measured using a thermocouple touching plant tissue; the photoperiod detector measured ambient light with the same accuracy as did time lapse photography; the budburst sensor accurately detected the timing of budburst; and the sensor itself did not influence the budburst timing of Populus clones. Among other potential applications, future use of the sensor may provide plant phenotyping at the landscape level for integration with landscape genomics.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Frontiers in Plant S...arrow_drop_down
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    Frontiers in Plant Science
    Article . 2015 . Peer-reviewed
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    Frontiers in Plant Science
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    Frontiers in Plant Science
    Article . 2015
    Data sources: DOAJ
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Frontiers in Plant S...arrow_drop_down
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      Frontiers in Plant Science
      Article . 2015 . Peer-reviewed
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