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Digital Annex for the following thesis: Vila-Viçosa, C. (2023). Natural History, Biogeography and Evolution of the Iberian white oak syngameon (Quercus L. Sect. Quercus). Ph.D. Thesis, Faculdade de Ciências da Universidade do Porto, Portugal Abstract: The genus Quercus L. is one of the most diverse and important group of woody plants, particularly when considering that they are the trees that rule the Northern Hemisphere forests. Oaks have an intricate Biogeography that criss-crosses diverse climatic and edaphic gradients, encompassing a huge ambiguity in terms of species delimitation. Frequently, the taxonomic proposals brought by traditional Linnaean Botany are either insufficient or rather inflate the number of species and nomenclatural assignments, which are further diluted into inconsistent taxonomic ranks, varying from species to subspecies and varieties. The supremacy given to morphological characters that are inherently fragile and plastic, spread across the distribution areas of distinct lineages, may carry ambiguity on the identification and proper species delimitation. From the oaks that are distributed across the Western Palearctic region, the ones that are deciduous or brevi-deciduous present higher levels of ambiguity in terms of species number and their delimitation. This ambiguity is particularly strong in the circummediterranean region and in the transitional areas between the two major biogeographic Regions of the western Palearctic region, the Euro-Siberian and Mediterranean. This degree of uncertainty, which increases towards the Southern European Peninsulas, is amplified by the ease that the different species of oaks tend to hybridize among them. The present work provides a holistic framework that covers multiple areas, from the taxonomic and evolutive study of this genus, to biogeography and molecular characterization. Its major objective was to resolve the species delimitation of the Iberian deciduous and marcescent oaks and putative introgression among them, enhancing the available knowledge about species diversity, which can foster suitable species and forest conservation. A specific objective was to cross-reference the natural history revision and the different taxonomic treatments brought by distinct authors, with personal observations. These data were then incorporated into ecological modelling and molecular characterization, which in the end fed a newly updated taxonomic proposal. In Section A we obtained results from extensive field, herbaria, and literature review, updating the nomenclature of the Portuguese and western Mediterranean oaks. Section B was supported by Section A’s in-depth review and enabled finer species distribution models, nurturing both hindcast (since ca. 20 Kyr) and forecast (2070-2100) exercises of the range dynamics of Mediterranean oaks species. The study of past and future range shifts solved important pending biogeographic questions, especially related to past range-shifts. Such past-range shifts improved our knowledge on species responses to climate dynamics and allowed a better anticipation of future responses of range shifts driven by climate change. Section C encompassed the molecular characterization of Iberian white oak species and their hybrids, whose delimitation is often faltering when one intends to infer about species rank, or hypothesize about the participation of parent taxon in natural hybrid swarms. This work allowed us to solve the phylogenetic backbone of western Palearctic white oaks, suggesting a significant segregation of the Iberian pedunculate oaks and unveiling two subsections inside Section Quercus. These subsections are biogeographically well-segregated and present diverse levels of introgression among species. Results demonstrated the efficiency of RADSeq for rebuilding the reticulate phylogeny of the Eurasian white oaks, showcasing the significance of the Iberian Peninsula as a major hotspot for oak diversity. We implemented a circular approach to these methods, which retro-fed themselves in terms of insight generation, enabling a powerful strategy to solve the evolutionary history of this difficult groups of plants. We estimate that the reticulate historical biogeography of the western Palearctic white oaks deserves further scrutiny by adding vicariant oak populations from northern Africa, the Near East and southern European Peninsulas. Methods should again follow this similar additive and sequential process of adjoining deep Natural History examination, with extensive fieldwork in type populations and genome-wide molecular surveys, in order to solve this group of plants. With the present work, we were able to significantly improve on the depiction of the basic unit of Biodiversity (the Species), in the complex Quercus genus. We provided tools to enable further efforts for the conservation of the Mediterranean oak forests, which overwhelm one of the most important (and one of the most threatened) Biomes for plant conservation at the global scale.

Abstract High power pseudocapacitors are extremely relevant to answer specific needs in the current energy transition arena and to implement an efficient renewable energy society. However, literature shows that are still open gaps concerning improvement of their energy density at high power, conversion efficiency, cost and cycle life. Electrodes based on active transition metal compounds, and in particular metal sulphides, evidence high potential to meet these objectives. This work discusses the dependence on the synthesis route of the charge storage mechanism of manganese sulphide-based materials and relates the pseudocapacitive response of these electrodes with their polycrystalline nature. Results reveal that a manganese oxy-sulphide mixture can achieve a high specific capacitance of 231 F.g−1 at 0.5 A/g in a 0.65 V active window. These values represent a 31.5 % increase compared to pure rambergite, γ-MnS, and 436 % compared to pure hausmannite Mn3O4 prepared under the same conditions. Moreover, the results show that manganese oxy-sulphide electrodes are characterized by good charge retention (73%), and superior long term capacity retention (above 86%) after 5000 cycles, evidencing potential for high power energy storage applications.

A produção de biodiesel tem como subproduto o glicerol bruto que tem grau de pureza da ordem de 80%-88% em glicerol e é produzido num rácio de 1:10 (em massa) em relação à produção de biodiesel. No presente estudo pretendeu-se avaliar a possibilidade do uso deste subproduto em estado de pureza intermédio como aditivo para materiais cimentícios. É apresentado um estudo experimental sistemático relativo a propriedades mecânicas e físicas de pastas de cimento e argamassas, e apontados os principais benefícios que podem ser obtidos com o recurso a este sub-produto. O programa experimental permitiu observar comportamentos semelhantes aos que se obtêm com recurso a aceleradores de presa / anticongelantes comerciais. Fundação para a Ciência e a Tecnologia (FCT)

Nowadays, many construction companies use maturity-based approaches to support decisions that have strong impact on costs and sustainability of the construction process, such as: age of pre-stressing operations, decision of propping/formwork removal; instant of subjection to load, etc. Current approaches to quality control through maturity consist in evaluating the compressive strength evolution of the concrete mix at a reference curing temperature (usually 20°C), together with the determination of the apparent activation energy (Ea) of the mix. The value of Ea is usually obtained from one of these three sources: (i) reference recommendations based on the type of cement; (ii) calorimetric testing; (iii) testing of compressive strength evolution at several distinct temperatures. The only technique of determining Ea that really addresses a mechanical property is the latter one, demanding however the deployment of many specimens and tests. Furthermore, the destructive character of this technique limits the possibility of maintaining the same specimen for the entire Ea testing, thus increasing the variability/scattering of results. The present study intended to evaluate the possibility of assessing mechanical-based activation energy for concrete through continuous or quasicontinuous assessments of E-modulus since very early ages. E-modulus is a mechanical property depending on the advancement of the hydration reaction and the temperature stories during the curing, with the interesting characteristic of allowing non-destructive testing to be carried out. This paper presents an inter-laboratory and inter-technique comparative study of E-modulus evolution at several temperatures. Three laboratories were involved, contributing with specific testing techniques applied to a single mix of normal strength concrete: 1) BTJASPE (BéTon au Jeune Age, Suivi de la Prise et du module d'Elasticité), available at IFSTTAR in France; 2) EMM-ARM (Elasticity Modulus Measurement through Ambient Response Method) available at the University of Minho in Portugal; 3) TSTM (Temperature Stress Testing Machine), available at Université Libre de Bruxelles in Belgium. Fundação para a Ciência e a Tecnologia (FCT)

Sustainability assessment and rating systems are intended to foster more sustainable design, construction, operation, maintenance and disassembly/deconstruction promoting and making possible a better integration of environment, societal, and cost concerns with other traditional decision criteria. The use of improved and building technologies can contribute considerably to better environmental cycle and then to the sustainability of the constructions. It is widely recognised in the of Building Sustainability Assessment that Life Cycle Assessment (LCA) is a much preferable method for evaluating the environmental pressure caused by materials, Building assemblies and the whole life-cycle of a building. Nevertheless, LCA tools are not extensively used in building design and most of building sustainability assessment and systems are not comprehensive or consistently LCA-based. Reasons for this failure above all related to the huge variety and amount of material flows and processes of building’s Lifecycle and to the complexity of the stages of a LCA. This paper will present the difficulties and possible solutions to integrate more accurate environmental methods in rating systems. In this context, the paper will also present the work that is being carried out in the development of the Portuguese Building Sustainability Assessment system (SBTool PT)

AbstractEarthworms may promote the biodegradation of polycyclic aromatic hydrocarbons (PAHs) in soil, but the mechanism through which they exert such influence is still unknown. To determine if the stimulation of PAH degradation by earthworms is related to changes in microbial communities, a microcosm experiment was conducted consisting of columns with natural uncontaminated soil covered with PAH‐contaminated dredge sediment. Columns without and with low and high Eisenia andrei densities were prepared. Organic matter and PAH content, microbial biomass, and dehydrogenase activity (DHA) were measured in soil and sediment over time. Biolog Ecoplate™ and polymerase chain reaction using denaturing gradient gel electrophoresis were used to evaluate changes in metabolic and structural diversity of the microbial community, respectively. Earthworm activity promoted PAH degradation in soil, which was significant for biphenyl, benzo[a]pyrene, and benzo[e]pyrene. Microbial biomass and DHA activity generally did not change over the experiment. Earthworm activity did change microbial community structure, but this did not affect its functioning in terms of carbon substrate consumption. Results suggest no relationship between changes in the microbial community by earthworm activity and increased PAH disappearance. The role of shifts in soil microbial community structure induced by earthworms in PAH removal needs further investigation. Environ. Toxicol. Chem. 2012;31:794–803. © 2011 SETAC

A methodology for the sizing of domestic hot water heating and storage systems is defined, by assuming an extreme operating condition cycle composed of only two parts, a water consumption period and a system repositioning period. In both parts to respond to the extreme hot water demanding conditions, the heating is always on. The subsequent exergy analysis of this domestic hot water production system compares the irreversibility and the exergy efficiency of the water storage and the tankless situation. To carry out such analysis, some basic assumptions were made: a constant temperature heat source, a short duration operating cycle and a constant thermal energy supply. Under these circumstances it is shown that the hot water storage system leads to lower exergy losses while the tankless system is more exergy efficient, but requiring a higher instantaneous thermal power input. The use of the joule effect electricity, as the system heat source, be it a water storage one or a tankless one, maximizes the system irreversibility losses and minimizes the system exergy efficiency. The tankless system, with the joule effect electricity heat source is the worst situation.

AbstractThe protic ionic liquid (PIL) N‐butylimidazolium trifluoromethanesulfonate ([BIm][TfO]) was obtained for the first time and incorporated into a sol–gel‐derived di‐ureasil matrix with a concentration of X=5, 10, and 30 %, where X is the ratio of the mass of PIL per mass of poly(oxyethylene). Four years after their synthesis, the resulting quasi‐anhydrous electrolytes remained amorphous, homogeneous, flexible, and thermally stable below 200 °C. SEM/EDS data revealed the presence of the PIL at the surface of the xerogels with X>5 %, demonstrating that this type of morphological characterization is mandatory to avoid misleading ionic conductivity values. The highest ionic conductivity was produced in the washed sample with X=30 % (3.5×10−5 and 2.1×10−3 S cm−1 at 25 and 170 °C, respectively). The present family of electrolytes yielded higher conductivities than the N‐ethylimidazolium trifluoromethanesulfonate‐based analogues introduced earlier by our group and may thus be considered as promising candidates for applications in fuel cells.