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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Bekkby, Trine; Torstensen, Ragnhild Ryther Grimm; Grünfeld, Lars Andreas Holm; Gundersen, Hege; +7 Authors

    This is the dataset used to analyse biomass of fauna collected in farmed and wild kelp at the West coast of Norway (Søre Sunnmøre) in April 2019. Coordinates are given in the fil. 

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2023
    Data sources: Datacite
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2023
    Data sources: Datacite
    ZENODO
    Dataset . 2023
    Data sources: ZENODO
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2023
      Data sources: Datacite
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2023
      Data sources: Datacite
      ZENODO
      Dataset . 2023
      Data sources: ZENODO
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao

    Digital Annex for the following thesis: Vila-Viçosa, C. (2023). Natural History, Biogeography and Evolution of the Iberian white oak syngameon (Quercus L. Sect. Quercus). Ph.D. Thesis, Faculdade de Ciências da Universidade do Porto, Portugal Abstract: The genus Quercus L. is one of the most diverse and important group of woody plants, particularly when considering that they are the trees that rule the Northern Hemisphere forests. Oaks have an intricate Biogeography that criss-crosses diverse climatic and edaphic gradients, encompassing a huge ambiguity in terms of species delimitation. Frequently, the taxonomic proposals brought by traditional Linnaean Botany are either insufficient or rather inflate the number of species and nomenclatural assignments, which are further diluted into inconsistent taxonomic ranks, varying from species to subspecies and varieties. The supremacy given to morphological characters that are inherently fragile and plastic, spread across the distribution areas of distinct lineages, may carry ambiguity on the identification and proper species delimitation. From the oaks that are distributed across the Western Palearctic region, the ones that are deciduous or brevi-deciduous present higher levels of ambiguity in terms of species number and their delimitation. This ambiguity is particularly strong in the circummediterranean region and in the transitional areas between the two major biogeographic Regions of the western Palearctic region, the Euro-Siberian and Mediterranean. This degree of uncertainty, which increases towards the Southern European Peninsulas, is amplified by the ease that the different species of oaks tend to hybridize among them. The present work provides a holistic framework that covers multiple areas, from the taxonomic and evolutive study of this genus, to biogeography and molecular characterization. Its major objective was to resolve the species delimitation of the Iberian deciduous and marcescent oaks and putative introgression among them, enhancing the available knowledge about species diversity, which can foster suitable species and forest conservation. A specific objective was to cross-reference the natural history revision and the different taxonomic treatments brought by distinct authors, with personal observations. These data were then incorporated into ecological modelling and molecular characterization, which in the end fed a newly updated taxonomic proposal. In Section A we obtained results from extensive field, herbaria, and literature review, updating the nomenclature of the Portuguese and western Mediterranean oaks. Section B was supported by Section A’s in-depth review and enabled finer species distribution models, nurturing both hindcast (since ca. 20 Kyr) and forecast (2070-2100) exercises of the range dynamics of Mediterranean oaks species. The study of past and future range shifts solved important pending biogeographic questions, especially related to past range-shifts. Such past-range shifts improved our knowledge on species responses to climate dynamics and allowed a better anticipation of future responses of range shifts driven by climate change. Section C encompassed the molecular characterization of Iberian white oak species and their hybrids, whose delimitation is often faltering when one intends to infer about species rank, or hypothesize about the participation of parent taxon in natural hybrid swarms. This work allowed us to solve the phylogenetic backbone of western Palearctic white oaks, suggesting a significant segregation of the Iberian pedunculate oaks and unveiling two subsections inside Section Quercus. These subsections are biogeographically well-segregated and present diverse levels of introgression among species. Results demonstrated the efficiency of RADSeq for rebuilding the reticulate phylogeny of the Eurasian white oaks, showcasing the significance of the Iberian Peninsula as a major hotspot for oak diversity. We implemented a circular approach to these methods, which retro-fed themselves in terms of insight generation, enabling a powerful strategy to solve the evolutionary history of this difficult groups of plants. We estimate that the reticulate historical biogeography of the western Palearctic white oaks deserves further scrutiny by adding vicariant oak populations from northern Africa, the Near East and southern European Peninsulas. Methods should again follow this similar additive and sequential process of adjoining deep Natural History examination, with extensive fieldwork in type populations and genome-wide molecular surveys, in order to solve this group of plants. With the present work, we were able to significantly improve on the depiction of the basic unit of Biodiversity (the Species), in the complex Quercus genus. We provided tools to enable further efforts for the conservation of the Mediterranean oak forests, which overwhelm one of the most important (and one of the most threatened) Biomes for plant conservation at the global scale.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2023
    Data sources: Datacite
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2023
    Data sources: Datacite
    ZENODO
    Dataset . 2023
    Data sources: ZENODO
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2023
      Data sources: Datacite
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2023
      Data sources: Datacite
      ZENODO
      Dataset . 2023
      Data sources: ZENODO
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao

    This scenario set of consistent national and global low-carbon development pathways, developed as part of the CD-LINKS project, takes current national policies and the Nationally Determined Contributions (NDCs) as an entry point for short-term climate action, then transitioning to the long-term temperature goals of 1.5 and 2°C as defined by the Paris Agreement. The scenarios explore the complex interplay between climate action and development, while simultaneously taking both global and national perspectives and thereby informing the design of complementary climate-development policies. The CD-LINKS consortium brought together national and global integrated assessment modeling teams from Europe, China, India, Brazil, Russia, Japan and the USA as well as domain experts in the areas of human development, climate adaptation, economics, energy geopolitics, atmospheric chemistry, human health, land use, agriculture, and water. The data is available for download at the CD-LINKS Scenario Explorer. The license permits use of the scenario ensemble for scientific research and science communication, but restricts redistribution of substantial parts of the data. Please refer to the FAQ and legal code for more information.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2020
    Data sources: Datacite
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2020
    Data sources: Datacite
    ZENODO
    Dataset . 2020
    Data sources: ZENODO
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2020
      Data sources: Datacite
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2020
      Data sources: Datacite
      ZENODO
      Dataset . 2020
      Data sources: ZENODO
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao

    16S abundances, taxonomic assignments, environmental data, community metabolic predictions, and Differential abundance testing from 3 Pyrosequencing runs, and 1 MiSeq run; relevant to chapters 2-5 of PhD Thesis. Data provided in tab- separated text format. ## Appendix D.i: 16S community abundance and taxonomy data ## Appendix D.ii: environmental, process, and sequencing map-file data ## Appendix D.iii: predicted metabolism (chapter 2) ## Appendix D.iv: Differential Abundance testing (LEfSe [ch 2, 3], DESeq2 [ch 5]) data supplied ahead separate from any publications for the purposes of external auditing and Viva Voce

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2018
    Data sources: Datacite
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2018
    Data sources: Datacite
    ZENODO
    Dataset . 2018
    Data sources: ZENODO
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2018
      Data sources: Datacite
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2018
      Data sources: Datacite
      ZENODO
      Dataset . 2018
      Data sources: ZENODO
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Boateng, K. A.; Mensah, C. (Caleb); Agyei, T. (Thomas); Švik, M. (Marian);

    According to the fifth assessment report of the Intergovernmental Panel on Climate Change, changes in land use through urbanization and agriculture are the key anthropogenic effects of climate change. Thus, the preservation of natural environment of urban areas is essential for conserving water and soil, while still adjusting the microclimatic variables (temperature, precipitation, relative humidity, etc.) and stabilizing the natural ecological system from destruction. It has been observed that most parts of city's green vegetation have been lost due to housing developments and commercial activities. This study was carried out to assess the effect of the change in land use on a modern city like Sunyani, by observing the significant changes in vegetation cover from LANDSAT TM imagery over a 31-year period (1986-2017). From the study, there was significant decline of vegetation cover from 1986 to 1999, and no significant change from 1999 to 2017. There were also significant changes in the built-up areas from 1986 to 1999 and no significant change from 1999 to 2017. Adoption of sustainable and environmentally friendly technologies that maintain open green vegetation is recommended for future city planning.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Repository of the Cz...arrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Repository of the Cz...arrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • Authors: Boogaard, Floris; Zevenbergen, Chris;
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Sinet-Mathiot, Virginie; Le Meillour, Louise;

    Le Meillour & Sinet-Mathiot et al. 2024 Increasing sustainability in palaeoproteomics by optimizing digestion times for large-scale archaeological bone analyses DOI: 10.1016/j.isci.2024.109432 MALDI-ToF MS data (raw data: mzML files, merged spectra: msd files) used for the ZooMS analysis of the bone material from Baishiya Karst Cave (China) and La Draga (Spain), along with the R codes for merging triplicates into one msd file. 

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2024
    Data sources: Datacite
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    ZENODO
    Dataset . 2024
    Data sources: Datacite
    ZENODO
    Dataset . 2024
    Data sources: ZENODO
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2024
      Data sources: Datacite
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2024
      Data sources: Datacite
      ZENODO
      Dataset . 2024
      Data sources: ZENODO
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Yatskiv, R. (Roman); Bašinová, N. (Nikola); Grym, J. (Jan); Vaniš, J. (Jan);

    We report on the properties of Eu-doped ZnO nanorods prepared by chemical bath deposition from aqueous solutions in an autoclave. The autoclave enables to grow the nanorods above the boiling point of water. The nanorods were characterized by scanning electron microscopy, secondary ion mass spectroscopy, and low temperature photoluminescence spectroscopy. Under the UV light excitation, the nanorods show a strong blue emission at 450 nm, which is associated with the 4f(6)5d - 4f(4) transitions of Eu2+ ions. We discuss the mechanisms responsible for the blue luminescence. We further clarify how the growth parameters affect the morphology and the optical properties of the nanorods. Growth temperatures above the boiling point of water significantly influence the intensity ratio of the near band edge emission to the deep level emission and greatly enhance optical quality of the nanorods.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Repository of the Cz...arrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao

    Abundance and taxonomic assignments from 3 Pyrosequencing runs, and 1 MiSeq run for chapters 2-5 of PhD Thesis. Data provided in tab- separated text format.

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    ZENODO
    Dataset . 2018
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Dataset . 2018
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    Dataset . 2018
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      Dataset . 2018
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      Dataset . 2018
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      Dataset . 2018
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  • Authors: Boogaard, Floris; Venvik, Guri;

    Cities are becoming increasingly vulnerable to climate change, and there is an urgent need to make them more resilient. The Climatescan adaptation tool www.climatescan.nl is applied as an interactive tool for knowledge exchange and raising awareness on Nature-Bases Solutions (NBS) targeting young professionals in ClimateCafes. Climatescan is a citizen science tool created through ‘learning by doing’, which is interactive, open source, and provide more detailed information on Best Management Practices (BMPs) as: exact location, website links, free photo and film material. BMPs related to Innovations for Climatic Events (INXCES) as stormwater infiltration by swales, raingardens, water squares, green roofs subsurface infiltration are mapped and published on social media. Climatescan is in continuous development as more data is uploaded by over 250 people around the world, and improvements are made to respond to feedback from users. In an early stage of the international knowledge exchange tool Climatescan, the tool was evaluated by semi-structured interviews in the Climatescan community with the following result: stakeholders demand tools that are interactive, open source, and provide more detailed information (location, free photo and film material). In 2016 Climatescan (first stage of INXCES) was turned into an APP and within two years the tool had over 10,000 users and more than 3,000 international projects. More than 60% of the users are younger than 34 and 51% of users are female, resulting in engagement with an important target group: young professionals. The tool is applied in Climatecafe.nl around the world (The Netherlands, Sweden, Philippines, Indonesia, South Africa) where in a short period of time stakeholders in triple helix context (academia, public and private sector) work on climate related challenges and exchange their knowledge in a café setting. Climatescan has also been used in other water challenges with young professionals such as the Hanseatic Water City Challenge and Wetskills. During the INXCES project over 1000 BMPs related to Innovations for Climatic Events (INXCES) are mapped in all partner countries (figure 1). The points of interest vary from just a location with a short description to a full uploaded project with location, description and summary, photos and videos, presentations, links to websites with more information and scientific papers and books (as Bryggen in Norway: https://www.climatescan.nl/projects/16/detail ).

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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Bekkby, Trine; Torstensen, Ragnhild Ryther Grimm; Grünfeld, Lars Andreas Holm; Gundersen, Hege; +7 Authors

    This is the dataset used to analyse biomass of fauna collected in farmed and wild kelp at the West coast of Norway (Søre Sunnmøre) in April 2019. Coordinates are given in the fil. 

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    ZENODO
    Dataset . 2023
    Data sources: Datacite
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    ZENODO
    Dataset . 2023
    Data sources: Datacite
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    Dataset . 2023
    Data sources: ZENODO
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      ZENODO
      Dataset . 2023
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO
      Dataset . 2023
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      Dataset . 2023
      Data sources: ZENODO
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao

    Digital Annex for the following thesis: Vila-Viçosa, C. (2023). Natural History, Biogeography and Evolution of the Iberian white oak syngameon (Quercus L. Sect. Quercus). Ph.D. Thesis, Faculdade de Ciências da Universidade do Porto, Portugal Abstract: The genus Quercus L. is one of the most diverse and important group of woody plants, particularly when considering that they are the trees that rule the Northern Hemisphere forests. Oaks have an intricate Biogeography that criss-crosses diverse climatic and edaphic gradients, encompassing a huge ambiguity in terms of species delimitation. Frequently, the taxonomic proposals brought by traditional Linnaean Botany are either insufficient or rather inflate the number of species and nomenclatural assignments, which are further diluted into inconsistent taxonomic ranks, varying from species to subspecies and varieties. The supremacy given to morphological characters that are inherently fragile and plastic, spread across the distribution areas of distinct lineages, may carry ambiguity on the identification and proper species delimitation. From the oaks that are distributed across the Western Palearctic region, the ones that are deciduous or brevi-deciduous present higher levels of ambiguity in terms of species number and their delimitation. This ambiguity is particularly strong in the circummediterranean region and in the transitional areas between the two major biogeographic Regions of the western Palearctic region, the Euro-Siberian and Mediterranean. This degree of uncertainty, which increases towards the Southern European Peninsulas, is amplified by the ease that the different species of oaks tend to hybridize among them. The present work provides a holistic framework that covers multiple areas, from the taxonomic and evolutive study of this genus, to biogeography and molecular characterization. Its major objective was to resolve the species delimitation of the Iberian deciduous and marcescent oaks and putative introgression among them, enhancing the available knowledge about species diversity, which can foster suitable species and forest conservation. A specific objective was to cross-reference the natural history revision and the different taxonomic treatments brought by distinct authors, with personal observations. These data were then incorporated into ecological modelling and molecular characterization, which in the end fed a newly updated taxonomic proposal. In Section A we obtained results from extensive field, herbaria, and literature review, updating the nomenclature of the Portuguese and western Mediterranean oaks. Section B was supported by Section A’s in-depth review and enabled finer species distribution models, nurturing both hindcast (since ca. 20 Kyr) and forecast (2070-2100) exercises of the range dynamics of Mediterranean oaks species. The study of past and future range shifts solved important pending biogeographic questions, especially related to past range-shifts. Such past-range shifts improved our knowledge on species responses to climate dynamics and allowed a better anticipation of future responses of range shifts driven by climate change. Section C encompassed the molecular characterization of Iberian white oak species and their hybrids, whose delimitation is often faltering when one intends to infer about species rank, or hypothesize about the participation of parent taxon in natural hybrid swarms. This work allowed us to solve the phylogenetic backbone of western Palearctic white oaks, suggesting a significant segregation of the Iberian pedunculate oaks and unveiling two subsections inside Section Quercus. These subsections are biogeographically well-segregated and present diverse levels of introgression among species. Results demonstrated the efficiency of RADSeq for rebuilding the reticulate phylogeny of the Eurasian white oaks, showcasing the significance of the Iberian Peninsula as a major hotspot for oak diversity. We implemented a circular approach to these methods, which retro-fed themselves in terms of insight generation, enabling a powerful strategy to solve the evolutionary history of this difficult groups of plants. We estimate that the reticulate historical biogeography of the western Palearctic white oaks deserves further scrutiny by adding vicariant oak populations from northern Africa, the Near East and southern European Peninsulas. Methods should again follow this similar additive and sequential process of adjoining deep Natural History examination, with extensive fieldwork in type populations and genome-wide molecular surveys, in order to solve this group of plants. With the present work, we were able to significantly improve on the depiction of the basic unit of Biodiversity (the Species), in the complex Quercus genus. We provided tools to enable further efforts for the conservation of the Mediterranean oak forests, which overwhelm one of the most important (and one of the most threatened) Biomes for plant conservation at the global scale.

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    ZENODO
    Dataset . 2023
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    Dataset . 2023
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    Dataset . 2023
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      Dataset . 2023
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      Dataset . 2023
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      Dataset . 2023
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao

    This scenario set of consistent national and global low-carbon development pathways, developed as part of the CD-LINKS project, takes current national policies and the Nationally Determined Contributions (NDCs) as an entry point for short-term climate action, then transitioning to the long-term temperature goals of 1.5 and 2°C as defined by the Paris Agreement. The scenarios explore the complex interplay between climate action and development, while simultaneously taking both global and national perspectives and thereby informing the design of complementary climate-development policies. The CD-LINKS consortium brought together national and global integrated assessment modeling teams from Europe, China, India, Brazil, Russia, Japan and the USA as well as domain experts in the areas of human development, climate adaptation, economics, energy geopolitics, atmospheric chemistry, human health, land use, agriculture, and water. The data is available for download at the CD-LINKS Scenario Explorer. The license permits use of the scenario ensemble for scientific research and science communication, but restricts redistribution of substantial parts of the data. Please refer to the FAQ and legal code for more information.

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    ZENODO
    Dataset . 2020
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Dataset . 2020
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    Dataset . 2020
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      Dataset . 2020
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      Dataset . 2020
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      Dataset . 2020
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao

    16S abundances, taxonomic assignments, environmental data, community metabolic predictions, and Differential abundance testing from 3 Pyrosequencing runs, and 1 MiSeq run; relevant to chapters 2-5 of PhD Thesis. Data provided in tab- separated text format. ## Appendix D.i: 16S community abundance and taxonomy data ## Appendix D.ii: environmental, process, and sequencing map-file data ## Appendix D.iii: predicted metabolism (chapter 2) ## Appendix D.iv: Differential Abundance testing (LEfSe [ch 2, 3], DESeq2 [ch 5]) data supplied ahead separate from any publications for the purposes of external auditing and Viva Voce

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    ZENODO
    Dataset . 2018
    Data sources: Datacite
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Dataset . 2018
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    Dataset . 2018
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      ZENODO
      Dataset . 2018
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      Dataset . 2018
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      Dataset . 2018
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Boateng, K. A.; Mensah, C. (Caleb); Agyei, T. (Thomas); Švik, M. (Marian);

    According to the fifth assessment report of the Intergovernmental Panel on Climate Change, changes in land use through urbanization and agriculture are the key anthropogenic effects of climate change. Thus, the preservation of natural environment of urban areas is essential for conserving water and soil, while still adjusting the microclimatic variables (temperature, precipitation, relative humidity, etc.) and stabilizing the natural ecological system from destruction. It has been observed that most parts of city's green vegetation have been lost due to housing developments and commercial activities. This study was carried out to assess the effect of the change in land use on a modern city like Sunyani, by observing the significant changes in vegetation cover from LANDSAT TM imagery over a 31-year period (1986-2017). From the study, there was significant decline of vegetation cover from 1986 to 1999, and no significant change from 1999 to 2017. There were also significant changes in the built-up areas from 1986 to 1999 and no significant change from 1999 to 2017. Adoption of sustainable and environmentally friendly technologies that maintain open green vegetation is recommended for future city planning.

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  • Authors: Boogaard, Floris; Zevenbergen, Chris;
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Sinet-Mathiot, Virginie; Le Meillour, Louise;

    Le Meillour & Sinet-Mathiot et al. 2024 Increasing sustainability in palaeoproteomics by optimizing digestion times for large-scale archaeological bone analyses DOI: 10.1016/j.isci.2024.109432 MALDI-ToF MS data (raw data: mzML files, merged spectra: msd files) used for the ZooMS analysis of the bone material from Baishiya Karst Cave (China) and La Draga (Spain), along with the R codes for merging triplicates into one msd file. 

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    ZENODO
    Dataset . 2024
    Data sources: Datacite
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    ZENODO
    Dataset . 2024
    Data sources: Datacite
    ZENODO
    Dataset . 2024
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      ZENODO
      Dataset . 2024
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      Dataset . 2024
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      Dataset . 2024
      Data sources: ZENODO
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Yatskiv, R. (Roman); Bašinová, N. (Nikola); Grym, J. (Jan); Vaniš, J. (Jan);

    We report on the properties of Eu-doped ZnO nanorods prepared by chemical bath deposition from aqueous solutions in an autoclave. The autoclave enables to grow the nanorods above the boiling point of water. The nanorods were characterized by scanning electron microscopy, secondary ion mass spectroscopy, and low temperature photoluminescence spectroscopy. Under the UV light excitation, the nanorods show a strong blue emission at 450 nm, which is associated with the 4f(6)5d - 4f(4) transitions of Eu2+ ions. We discuss the mechanisms responsible for the blue luminescence. We further clarify how the growth parameters affect the morphology and the optical properties of the nanorods. Growth temperatures above the boiling point of water significantly influence the intensity ratio of the near band edge emission to the deep level emission and greatly enhance optical quality of the nanorods.

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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Repository of the Cz...arrow_drop_down
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao

    Abundance and taxonomic assignments from 3 Pyrosequencing runs, and 1 MiSeq run for chapters 2-5 of PhD Thesis. Data provided in tab- separated text format.

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    Dataset . 2018
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Dataset . 2018
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  • Authors: Boogaard, Floris; Venvik, Guri;

    Cities are becoming increasingly vulnerable to climate change, and there is an urgent need to make them more resilient. The Climatescan adaptation tool www.climatescan.nl is applied as an interactive tool for knowledge exchange and raising awareness on Nature-Bases Solutions (NBS) targeting young professionals in ClimateCafes. Climatescan is a citizen science tool created through ‘learning by doing’, which is interactive, open source, and provide more detailed information on Best Management Practices (BMPs) as: exact location, website links, free photo and film material. BMPs related to Innovations for Climatic Events (INXCES) as stormwater infiltration by swales, raingardens, water squares, green roofs subsurface infiltration are mapped and published on social media. Climatescan is in continuous development as more data is uploaded by over 250 people around the world, and improvements are made to respond to feedback from users. In an early stage of the international knowledge exchange tool Climatescan, the tool was evaluated by semi-structured interviews in the Climatescan community with the following result: stakeholders demand tools that are interactive, open source, and provide more detailed information (location, free photo and film material). In 2016 Climatescan (first stage of INXCES) was turned into an APP and within two years the tool had over 10,000 users and more than 3,000 international projects. More than 60% of the users are younger than 34 and 51% of users are female, resulting in engagement with an important target group: young professionals. The tool is applied in Climatecafe.nl around the world (The Netherlands, Sweden, Philippines, Indonesia, South Africa) where in a short period of time stakeholders in triple helix context (academia, public and private sector) work on climate related challenges and exchange their knowledge in a café setting. Climatescan has also been used in other water challenges with young professionals such as the Hanseatic Water City Challenge and Wetskills. During the INXCES project over 1000 BMPs related to Innovations for Climatic Events (INXCES) are mapped in all partner countries (figure 1). The points of interest vary from just a location with a short description to a full uploaded project with location, description and summary, photos and videos, presentations, links to websites with more information and scientific papers and books (as Bryggen in Norway: https://www.climatescan.nl/projects/16/detail ).

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