Nanostructured and mesoporous cobalt oxide (Co3O4) nanowire in flower-like arrangements have been directly grown over flexible carbon cloth collectors using solvothermal synthesis for supercapacitor applications. Changes in the morphology and porosity of the nanowire assemblies have been induced by manipulating the calcination temperature (200–300 °C) of the one-dimensional (1-D) structures, resulting in significant impact on their surface area and pseudocapacitive properties. As the calcination temperature increases from 200 to 250 °C, the flower morphology gradually modifies to the point where the electrolyte could access almost all the nanowires over the entire sample volume, resulting in an increase in specific capacitance from 334 to 605 Fg−1, depending on the nanowire electrode morphology. The 300 °C calcination results in the breakdown of the mesoporous morphology and decreases the efficiency of electrolyte diffusion, resulting in a drop in pseudocapacitance after 300 °C. A peak energy density of 44 Wh kg−1 has been obtained at a power density of 20 kW kg−1 for the 250 °C calcined sample.