Abstract In this paper we report an approach to improve water management of commercial GDLs by introducing hydrophobicity patterns. Specifically, line and grid patterns have been created in the MPL side by laser radiation. For an in-depth investigation of these modified GDLs the current density distribution was monitored during fuel cell operation. Additionally, the physical properties of these materials were investigated by a number of ex situ methods such as Fourier transform infrared microscopy, electrochemical impedance spectroscopy and water vapor sorption. Furthermore, a comparison of the physical properties of the patterned GDLs with chemically modified GDLs (treated in H2SO4 and H2O2) is provided. Our results show a clearly improved homogeneity of current density distribution of the patterned GDLs compared to untreated GDLs. This observation is likely due to a reduced local hydrophobicity which facilitates water diffusion along the flow field of the fuel cell. However, performance of the fuel cell was not affected by the MPL irradiation. Graphical Abstract