In this paper the extension of the multigroup nodal diffusion code ANDES, based on the Analytic Coarse Mesh Finite Difference (ACMFD) method, from Cartesian to hexagonal geometry is presented, as well as its coupling with the thermal–hydraulic (TH) code COBRA-IIIc for hexagonal core analysis. In extending the ACMFD method to hexagonal assemblies, triangular-Z nodes are used. In the radial plane, a direct transverse integration procedure is applied along the three directions that are orthogonal to the triangle interfaces. The triangular nodalization avoids the singularities, that appear when applying transverse integration to hexagonal nodes, and allows the advantage of the mesh subdivision capabilities implicit within that geometry. As for the thermal–hydraulics, the extension of the coupling scheme to hexagonal geometry has been performed with the capability to model the core using either assembly-wise channels (hexagonal mesh) or a higher refinement with six channels per fuel assembly (triangular mesh). Achieving this level of TH mesh refinement with COBRA-IIIc code provides a better estimation of the in-core 3D flow distribution, improving the TH core modelling. The neutronics and thermal–hydraulics coupled code, ANDES/COBRA-IIIc, previously verified in Cartesian geometry core analysis, can also be applied now to full three-dimensional VVER core problems, as well as to other thermal and fast hexagonal core designs. Verification results are provided, corresponding to the different cases of the OECD/NEA-NSC VVER-1000 Coolant Transient Benchmarks.