Nowadays, the use of renewable generations, energy storage systems (ESSs) and microgrids (MGs) has been developed due to better controllability of distributed energy resources (DERs) as well as their cost-effective and emission-aware operation. The development of MGs as well as the use of hierarchical control has led to data transmission in the communication platform. As a result, the expansion of communication infrastructure has made MGs as cyber-physical systems (CPSs) vulnerable to cyber-attacks (CAs). Accordingly, prevention, detection and isolation of CAs during proper control of MGs is essential. In this paper, a comprehensive review on the control strategies of microgrids against CAs and its defense mechanisms has been done. The general structure of the paper is as follows: firstly, MGs operational conditions, i.e., the secure or insecure mode of the physical and cyber layers are investigated and the appropriate control to return to a safer mode are presented. Then, the common MGs communication system is described which is generally used for multi-agent systems (MASs). Also, classification of CAs in MGs has been reviewed. Afterwards, a comprehensive survey of available researches in the field of prevention, detection and isolation of CA and MG control against CA are summarized. Finally, future trends in this context are clarified.