In the present study, a dual-compartment microbial fuel cell (MFC) was constructed and continuously operated under different influent concentrations of ammonium-nitrogen (5-40 mg/L). The impacts of ammonium on organics removal, energy output and nutrient recovery were investigated. Experimental results demonstrated that this MFC reactor achieved a CDO removal efficiency of greater than 85%. Moreover, excess ammonium concentration in the feed solution compromises the generation of electricity. Simultaneously, the recovery rate of phosphate achieved in the MFC was insignificantly influenced at the wider influent ammonium concentration. In contrast, a high concentration of ammonium may not be beneficial for its recovery.