Abstract The onshore CO2-storage site Ketzin consists of one CO2-injection well and two observation wells. Hydraulic tests revealed permeabilities between 50 and 100 mD for the sandstone rock units. The designated injection well Ktzi 201 showed similar production permeability. After installation of the CO2-injection string, an injection test with water yielded a significantly lower injectivity of 0.002 m3/d kPa, while the observation wells showed an injection permeability in the same range as the productivity. Several possible reasons for the severe decline in injectivity are discussed. Acidification of the reservoir interval, injection at high wellhead pressure, controlled mini-fractures and back-production of the well are discussed to remove the plugging material to re-establish the required injectivity of the well. It has been decided to perform a nitrogen lift and analyse the back-produced fluids. Initially during the lift, the back-produced fluids were dark-black. Chemical and XRD analyses proved that the black solids consisted mainly of iron sulphide. Sulphate-reducing bacteria (SRB) were detected in fluid samples with up to 106 cells/ml by fluorescent in situ hybridisation (FISH) indicating that the formation of iron sulphide was caused by bacterial activity. Organic compounds within the drilling mud and other technical fluids were likely left during the well completion process, thus providing the energy source for strong proliferation of bacteria. During the lift, the fraction of SRB in the whole bacterial community decreased from approximately 32% in downhole samples to less than 5%. The lift of Ktzi 201 succeeded in the full restoration of the well productivity and injectivity. Additionally, the likely energy source of the SRB was largely removed by the lifting, thus ensuring the long-term preservation of the injectivity.