Effective water removal from the proton exchange membrane fuel cell (PEMFC) surface exposed to the flow channel is critical to the operation and water management in PEMFCs. In this study, the water removal process is investigated numerically for a novel flow channel formed by inserting a hydrophilic needle in the conventional PEMFC flow channel, and the effect of the surface wettability of the membrane electrode assembly (MEA) and the inserted needle on the water removal process is studied. The results show that the liquid water can be more effectively removed from the MEA surface for larger MEA surface contact angles and smaller needle surface contact angles. The pressure drop for the flow in the channel is also examined and it is seen to be indicative of the liquid water flow and transport in the flow channel, suggesting that pressure drop is a useful parameter for the investigation of water transport and dynamics in the flow channel.