The disposal area of a deep geological repository (DGR) for the disposal of spent nuclear fuels (SNFs) is estimated considering the spacing between deposition holes and between disposal tunnels, as determined by a thermal analysis using the decay heat of a reference SNF. Given the relatively large amount of decay heat of the reference SNF, the disposal area of the DGR is found to be overestimated. Therefore, we develop a computer program using MATLAB, termed ACom (Assembly Combination), to combine SNFs when stored in canisters such that the decay heat per canister is evenly distributed. The stability of ACom was checked and the overall distribution of the decay heat per canister was analyzed. Finally, ACom was applied to disposal scenarios suggested in the conceptual design of a DGR for SNFs, and it was confirmed that the decay heat per canister could be evenly distributed and that the maximum decay heat of the canister could be much lower than that of a canister estimated using a reference SNF. ACom can be used to improve the disposal efficiency by reducing the disposal area of a DGR for SNFs by ensuringg a relatively even distribution of decay heat per canister.