Abstract This study explores how major climatic shifts, together with socioeconomic factors over the past two millennia, influenced buffer crop selection, focusing on five crops: rye, millet, buckwheat, oat, and hemp. For this study, we analyzed archaeobotanical data from 135 archaeological contexts and historical data from 242 manor inventories across the northeastern Baltic region, spanning the period from 100 to 1800 AD. Our findings revealed that rye remained a main staple crop throughout the studied periods reflecting environmental adaptation to northern latitudes. The drought-tolerant and thermophilic millet crop exhibited resilience during the adverse dry climatic conditions of the Medieval Climatic Anomaly while showing a significant decline during the Little Ice Age. During the period of post-1500 AD, a significant shift towards cold-resilient summer crops such as buckwheat and hemp is recorded. This study enhances our understanding of how historical agricultural systems responded to both socioeconomic factors and climatic change in northern latitudes, offering notable potential solutions for modern agricultural practices in the face of future climate variability trends.