Abstract For similar species to co‐occur in places where resources are limited, they need to adopt strategies that partition resources to reduce competition. Our understanding of the mechanisms behind resource partitioning among sympatric marine predators is evolving, but we lack a clear understanding of how environmental change is impacting these dynamics. We investigated spatial and trophic resource partitioning among three sympatric seabirds with contrasting biological characteristics: greater crested terns Thalasseus bergii (efficient flyer, limited diver, and preference for high quality forage fish), little penguins Eudyptula minor (flightless, efficient diver, and preference for high quality forage fish) and silver gulls Chroicocephalus novaehollandiae (efficient flyer, limited diver and generalist diet). We investigated interannual variability in resource partitioning in relation to environmental variability in a climate change hotspot influenced by the warm and intensifying East Australian Current (EAC). Sampling was conducted from 2012 to 2014 during the austral summer breeding season of seabirds at Montague Island, Australia. Daily seabird movements were monitored using GPS trackers and feather tissues were collected and processed for stable isotope analysis (δ15N and δ13C). Generalised Linear Mixed Models were used to assess how changes in oceanographic conditions influenced space use for each species. Schoener's D and Bayesian mixing models were used to respectively investigate the levels of yearly inter‐specific environmental and trophic niche overlaps. Crested terns and little penguins were less likely to be observed in warm, saline EAC waters and crested terns and silver gulls had smaller foraging areas on days when more than 30% of available habitat was classified as EAC origin. All species preferred areas with low variability in sea surface temperature (<0.5°C). Terns and penguins occupied similar marine trophic levels, with penguins having larger isotopic niche spaces in 2014 when the EAC was more dominant in the study area. Gulls occupied the lowest trophic level, with the widest niche and lowest interannual variability in niche area. As the EAC intensifies along the southeast coast of Australia under climate change, interspecific competition for resources may increase, with the greatest impacts on species like little penguins that have relatively restricted foraging ranges. This study suggests that species‐specific biological traits and behavioural plasticity should be accounted for when predicting the effects of climate change on marine species.