Accurately estimating the return values of significant wave height is essential for marine and coastal infrastructure, particularly as climate change intensifies the frequency and intensity of extreme wave events. Traditional models, which assume stationarity in wave data, often underestimate future risks by neglecting the impacts of climate change on wave dynamics. Combining time series decomposition and recurrence analysis, the research develops a nonstationary framework to predict significant wave height. The stochastic component is modelled using a stationary probability distribution, while the deterministic component is predicted based on sea surface temperature projections from CMIP6 climate scenarios. The model evaluation demonstrates strong predictive capability for both stochastic and deterministic components. Application of the model to China’s coastal waters reveals significant discrepancies between stationary and nonstationary return value estimates. Compared to conventional distribution models, the nonstationary model predicts substantial increases in extreme wave heights. These findings underscore the importance of adopting nonstationary models to more accurately assess future risks posed by extreme wave events in a changing climate.