A constant and homogenous temperature control of Li-ion batteries is essential for a good performance, a safe operation, and a low aging rate. Especially when operating a battery with high loads in dense battery systems, a cooling system is required to keep the cell in a controlled temperature range. Therefore, an existing battery module is set up with a water-based liquid cooling system with aluminum cooling plates. A finite-element simulation is used to optimize the design and arrangement of the cooling plates regarding power consumption, cooling efficiency, and temperature homogeneity. The heat generation of an operating Li-ion battery is described by the lumped battery model, which is integrated into COMSOL Multiphysics. As the results show, a small set of non-destructively determined parameters of the lumped battery model is sufficient to estimate heat generation. The simulated temperature distribution within the battery pack confirmed adequate cooling and good temperature homogeneity as measured by an integrated temperature sensor array. Furthermore, the simulation reveals sufficient cooling of the batteries by using only one cooling plate per two pouch cells while continuously discharging at up to 3 C.