The transformation of the European energy sector is becoming a priority for the European Union. This is indicated, for instance, in the European Union strategy known as the European Green Deal. According to the Green Deal, the area of ‘research and innovation’ is one which can counteract climate change. Universities can play a significant role in this by adopting a pedagogical approach aimed at mobilizing the spirit of innovation and entrepreneurship in young professionals. In addition to modifying curricula related to mining, energy, and environmental engineering, i.e., activities in recognized, traditional schemes, one prospective tool may be the involvement of students and PhD candidates in European initiatives such as the InnoEnergy PhD School (which is funded by the European Institute of Innovation and Technology). This paper aims to discuss the InnoEnergy PhD School programme as a possible instrument for mitigating the negative effects of energy transformation. The article analyzes the programme using a case study method, including surveys and open interviews. The paper draws attention to and highlights the role of human resources in the field of education and the stimulation of innovation, as well as the need to strengthen the business component in the education of PhD candidates.