Emission quantification from the agricultural sector, and especially from livestock manure management, is relevant for assessing mitigation strategies and for inventory purposes. There are different direct techniques used to monitor emissions from quiescent surfaces. Common techniques include the closed static chamber and the open dynamic chamber. The aim of this study was to evaluate and compare different direct methods, two dynamic hoods and one static hood, for monitoring NH3 and greenhouse gas (GHG) emissions (N2O, CO2, and CH4) from different emission sources. These sources are ammonia solutions and different by-products of manure (compost, liquid fraction of digestate, and solid fraction of pig slurry). The use of dynamic hoods, despite their differences in size, operation, and applied air flux, presents comparable emission rates for all emissions and compounds assayed. These rates are always higher than those obtained using static hoods. Therefore, it can be concluded that the use of dynamic hoods is a valuable technique for refining the indirect estimation of emissions.