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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Al-Bitar, Ahmad; Veronika, Antonenko;

    Wheat Biomass for Kherson and Poltava regions in Ukraine The dataset contains Dry Above Ground Biomass (DAM) estimates over the Kherson and Poltava regions in Ukraine for years 2020,2021 and 2022. - Processing:The processing is done using the AgriCarbon-EOv1.5 processing chain, using the TREX processing centre at CNES France.The input remote sensing data are L2A Sentinel-2 surface reflectances provided by the MAJA processing chain based on the Copernicus Sentinel-2 L1C data.The Landcover maps are provided using ML Deep learning based on the Copernicus L2A data.The daily weather data is extracted from ERA5Land products (C3S). -Geophysical variable:Dry Above ground biomass of winter wheat in g/m2. - Extents: * DAM estimates over the Copernicus Sentinel-2 tile 36TWT cover the Kherson region.* DAM estimates over the Copernicus Sentinel-2 tile 36UVA cover the Poltava region. - Spatial resolution:10m resolution estimlates over wheat plots identified in the landcover map. - Temporal coverage:Estimates are provided at the end of the wheat cycle for cycles:* The year 2020 correspond to cycle: 2019-2020* The year 2021 corresponds to cycle : 2020-2021* The year 2022 corresponds to cycle : 2021-2022 - Projection: EPSG:32636 - File content: Each Raster file has 2 bands containing respectively: * band1: mean value of DAM in g/m2. * band2: standard deviation of DAM in g/m2. - List of maps:* Dry_aboveground_biomass_2020_T36TWT_Kherson_Ukraine.tif* Dry_aboveground_biomass_2020_T36UVA_Poltava_Ukraine.tif* Dry_aboveground_biomass_2021_T36TWT_Kherson_Ukraine.tif* Dry_aboveground_biomass_2021_T36UVA_Poltava_Ukraine.tif* Dry_aboveground_biomass_2022_T36TWT_Kherson_Ukraine.tif* Dry_aboveground_biomass_2022_T36UVA_Poltava_Ukraine.tif

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: ZENODO
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: ZENODO
  • Authors: Groot, Hugo de;

    The Global Yield Gap Atlas project (GYGA - http://yieldgap.org ) has undertaken a yield gap assessment following the protocol recommended by van Ittersum et. al. (van Ittersum et. al., 2013). This datafile holds the results for rainfed rice.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Wolfe, Kennedy David; Desbiens, Amelia; Mumby, Peter;

    Patterns of movement of marine species can reflect strategies of reproduction and dispersal, species’ interactions, trophodynamics, and susceptibility to change, and thus critically inform how we manage populations and ecosystems. On coral reefs, the density and diversity of metazoan taxa is greatest in dead coral and rubble, which is suggested to fuel food webs from the bottom-up. Yet, biomass and secondary productivity in rubble is predominantly available in some of the smallest individuals, limiting how accessible this energy is to higher trophic levels. We address the bioavailability of motile coral reef cryptofauna based on small-scale patterns of emigration in rubble. We deployed modified RUbble Biodiversity Samplers (RUBS) and emergence traps in a shallow rubble patch at Heron Island, Great Barrier Reef, to detect community-level differences in the directional influx of motile cryptofauna under five habitat accessibility regimes. The mean density (0.13–4.5 ind.cm-3) and biomass (0.14–5.2 mg.cm-3) of cryptofauna were high and varied depending on microhabitat accessibility. Emergent zooplankton represented a distinct community (dominated by the Appendicularia and Calanoida) with the lowest density and biomass, indicating constraints on nocturnal resource availability. Mean cryptofauna density and biomass were greatest when interstitial access within rubble was blocked, driven by the rapid proliferation of small harpacticoid copepods from the rubble surface, leading to trophic simplification. Individuals with high biomass (e.g., decapods, gobies, and echinoderms) were greatest when interstitial access within rubble was unrestricted. Treatments with a closed rubble surface did not differ from those completely open, suggesting that top-down predation does not diminish rubble-derived resources. Our results show that conspecific cues and species’ interactions (e.g., competition and predation) within rubble are most critical in shaping ecological outcomes within the cryptobiome. These findings have implications for prey accessibility through trophic and community size structuring in rubble, which may become increasingly relevant as benthic reef complexity shifts in the Anthropocene. We address the bioavailability of coral reef cryptofauna in rubble based on small-scale patterns of emigration. We adapted the accessibility of Rubble Biodiversity Samplers (RUBS), models used to standardise biodiversity sampling in rubble (Wolfe and Mumby 2020), to explore the local movement patterns of rubble-dwelling fauna, with inference to predation processes within and beyond the cryptobenthos. Five treatments were developed to detect community-level differences in the directional influx of motile cryptofauna under various habitat accessibility regimes. Four of these treatments were developed by modifying accessibility into RUBS (https://www.thingiverse.com/thing:4176644/files) to understand limitations on the directional influx and movement of cryptofauna within coral rubble patches using four treatments; (1) open (completely accessible), (2) interstitial access (top closed), (3) surficial access (sides and bottom closed), and (4) raised (above rubble substratum). The fifth treatment involved a series of emergence plankton traps, designed to target demersal cryptofauna that vertically migrate from within the rubble benthos at night, given emergent zooplankton biomass and diversity are greatest at night. Fieldwork was conducted over several weeks (11th September to 5th October 2021) in a shallow (~3–5 m depth) reef slope site on the southern margin of Heron Island (-23˚26.845’ S, 151˚54.732’ E), Great Barrier Reef, Australia (Fig. 1). All collections were conducted under the Great Barrier Reef Marine Park Authority permit G20/44613.1.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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    ZENODO
    Dataset . 2023
    License: CC 0
    Data sources: ZENODO
    DRYAD
    Dataset . 2023
    License: CC 0
    Data sources: Datacite
    0
    citations0
    popularityAverage
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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      ZENODO
      Dataset . 2023
      License: CC 0
      Data sources: ZENODO
      DRYAD
      Dataset . 2023
      License: CC 0
      Data sources: Datacite
  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Coni, Ericka O C; Nagelkerken, Ivan; Ferreira, Camilo M; Connell, Sean D; +1 Authors

    Poleward range extensions by warm-adapted sea urchins are switching temperate marine ecosystems from kelp-dominated to barren-dominated systems that favour the establishment of range-extending tropical fishes. Yet, such tropicalization may be buffered by ocean acidification, which reduces urchin grazing performance and the urchin barrens that tropical range-extending fishes prefer. Using ecosystems experiencing natural warming and acidification, we show that ocean acidification could buffer warming-facilitated tropicalization by reducing urchin populations (by 87%) and inhibiting the formation of barrens. This buffering effect of CO2 enrichment was observed at natural CO2 vents that are associated with a shift from a barren-dominated to a turf-dominated state, which we found is less favourable to tropical fishes. Together, these observations suggest that ocean acidification may buffer the tropicalization effect of ocean warming against urchin barren formation via multiple processes (fewer urchins and barrens) and consequently slow the increasing rate of tropicalization of temperate fish communities. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-07-26.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
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    B2FIND
    Dataset . 2021
    Data sources: B2FIND
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    PANGAEA
    Dataset . 2021
    License: CC BY
    Data sources: PANGAEA
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    PANGAEA
    Dataset . 2021
    Data sources: PANGAEA
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      B2FIND
      Dataset . 2021
      Data sources: B2FIND
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      PANGAEA
      Dataset . 2021
      License: CC BY
      Data sources: PANGAEA
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      PANGAEA
      Dataset . 2021
      Data sources: PANGAEA
  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Garlick, Cathy; Förch, Wiebke;

    This dataset contains files produced for and generated from the CCAFS Household Baseline Study carried out in sites in Latin America (Trifinio in Honduras/Guatemala, and Cauca in Colombia) and in South-East Asia (a site in each of Cambodia, Laos and Vietnam) in the latter months of 2014 and the early months of 2015. There are six sites in all (two sites from Trifinio). Before downloading any of the files, particularly the data files, please download and read the CCAFS ReadMe file which is prefixed by the code 0000. To gain access to the GPS coordinates from the restricted files please download and complete the Non-disclosure agreement from the file "0002 Non-Disclosure Agreement 2013-01-20.pdf" and send this to Wiebke Foerch at w.foerch@cgiar.org The study was based on earlier baseline studies carried out in sites in West and East Africa and in South Asia. Data and other files from these earlier studies are available in a separate dataset in this Dataverse archive. (CCAFS Household Baseline Survey 2010-2012). If you are intending to use data from both studies together we suggest you read the file "0001 Questionnaire Differences & Recoding Details 2015-10-29.pdf" which explains differences between the two studies.

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    Harvard Dataverse
    Dataset . 2015
    Data sources: Datacite
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      Harvard Dataverse
      Dataset . 2015
      Data sources: Datacite
  • Authors: Groot, Hugo de;

    The Global Yield Gap Atlas project (GYGA - http://yieldgap.org ) has undertaken a yield gap assessment following the protocol recommended by van Ittersum et. al. (van Ittersum et. al., 2013). This datafile holds the results for rainfed sugarcane.

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    Authors: Timmerman, Charles-Andre; Giraldo, Carolina; Cresson, Pierre; Ernande, Bruno; +4 Authors

    This dataset gathers data used to determine the temporal variability of couplings between pelagic and benthic habitats for fish assemblages at five periods. Organic matter fluxes were assessed using stable isotopes analysis. Species relative biomass was considered to explore energy fluxes within the fish assemblage

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    https://dx.doi.org/10.17882/76...
    Dataset . 2020
    License: CC BY
    Data sources: Datacite
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    SEANOE
    Dataset . 2020
    License: CC BY
    Data sources: SEANOE
    B2FIND
    Dataset . 2020
    Data sources: B2FIND
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      https://dx.doi.org/10.17882/76...
      Dataset . 2020
      License: CC BY
      Data sources: Datacite
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      SEANOE
      Dataset . 2020
      License: CC BY
      Data sources: SEANOE
      B2FIND
      Dataset . 2020
      Data sources: B2FIND
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    Authors: Kyle M. Dittmer; Sadie Shelton; Sessie Burns; Eva (Lini) Wollenberg;

    This document contains a review of global digital resources relevant to climate-informed agroecological transitions. The purpose of the review was to catalog relevant digital resources and assess their role in inclusive knowledge development, with special attention to farmers’ co-creation of knowledge for on-the-ground practices. To this end, we identified existing digital tools relevant to technical advisory and performance assessment and reviewed their functions (i.e., the purpose of using a tool) against indicators for exemplary features (i.e., the channels in which a user can engage with the tool) that could support socially inclusive, climate-informed agroecological transitions.<br><br> Metodology:To evaluate exemplary features of agricultural digital tools – defined here as an app, online resource (not platforms), or other software available on a digital device (e.g., phone, smartphone, computer, etc.), including those that are language, audio, and visually based – we developed 87 indicators (see Indicators Explained) relating to seven categories: (i) performance assessment, (ii) technological specifications, (iii) social inclusion and co-creation, (iv) scaling, (v) climate change adaptation, mitigation and whether the tool calculates greenhouse gas emissions, and (vi) agroecological principles Exemplariness was defined in this review as best fitting the requirements of the target users and best addressing agroecological and climate change mitigation and/or adaption outcomes. All indicators for categories i-v were developed and validated via several rounds of internal reviews and expert consultations. The 12 agroecological indicators (i.e., principles) were adopted and refined from the FAO 10 Elements of Agroecology (FAO, 2018), HLPE (HLPE, 2019) and TAPE (FAO, 2019) reports. Sixty (60) tools were selected for a full review against the 87 indicators based on their applicability to provide technical advisory and/or performance assessment on climate-informed agroecological transitions. Tools were classified as technical advisory resources if they delivered any recommendations regarding farming practices and as performance assessment resources if they included review of farm status or operations. Tools were mostly identified via Google searches, expert interviews, and platforms such as the CGIAR Evidence Clearing House and Digital Agri Hub. Each tool was reviewed by one analyst by accessing the tool, when available, or by reviewing materials online. A second analyst validated individual indicator responses when subjectivity in responses was an issue. Indicators were marked as ‘unknown’ when subjectivity in responses persisted or when information was not available.

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    Harvard Dataverse
    Dataset . 2022
    Data sources: Datacite
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      Harvard Dataverse
      Dataset . 2022
      Data sources: Datacite
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    Authors: Fedra Trujillano; G. Jiménez; Luis Edgar Tarazona-Manrique; Najat F. Kahamba; +5 Authors

    Abstract Background In the near future, the incidence of mosquito-borne diseases may expand to new sites due to changes in temperature and rainfall patterns caused by climate change. Therefore, there is a need to use recent technological advances to improve vector surveillance methodologies. Unoccupied Aerial Vehicles (UAVs), often called drones, have been used to collect high-resolution imagery to map detailed information on mosquito habitats and direct control measures to specific areas. Supervised classification approaches have been largely used to automatically detect vector habitats. However, manual data labelling for model training limits their use for rapid responses. Open-source foundation models such as the Meta AI Segment Anything Model (SAM) can facilitate the manual digitalization of high-resolution images. This pre-trained model can assist in extracting features of interest in a diverse range of images. Here, we evaluated the performance of SAM through the Samgeo package, a Python-based wrapper for geospatial data, as it has not been applied to analyse remote sensing images for epidemiological studies. Results We tested the identification of two land cover classes of interest: water bodies and human settlements, using different UAV acquired imagery across five malaria-endemic areas in Africa, South America, and Southeast Asia. We employed manually placed point prompts and text prompts associated with specific classes of interest to guide the image segmentation and assessed the performance in the different geographic contexts. An average Dice coefficient value of 0.67 was obtained for buildings segmentation and 0.73 for water bodies using point prompts. Regarding the use of text prompts, the highest Dice coefficient value reached 0.72 for buildings and 0.70 for water bodies. Nevertheless, the performance was closely dependent on each object, landscape characteristics and selected words, resulting in varying performance. Conclusions Recent models such as SAM can potentially assist manual digitalization of imagery by vector control programs, quickly identifying key features when surveying an area of interest. However, accurate segmentation still requires user-provided manual prompts and corrections to obtain precise segmentation. Further evaluations are necessary, especially for applications in rural areas.

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    International Journal of Health Geographics
    Article . 2024 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    https://dx.doi.org/10.60692/78...
    Other literature type . 2024
    Data sources: Datacite
    https://dx.doi.org/10.60692/z1...
    Other literature type . 2024
    Data sources: Datacite
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      International Journal of Health Geographics
      Article . 2024 . Peer-reviewed
      License: CC BY
      Data sources: Crossref
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      https://dx.doi.org/10.60692/78...
      Other literature type . 2024
      Data sources: Datacite
      https://dx.doi.org/10.60692/z1...
      Other literature type . 2024
      Data sources: Datacite
  • Authors: Groot, Hugo de;

    The Global Yield Gap Atlas project (GYGA - http://yieldgap.org ) has undertaken a yield gap assessment following the protocol recommended by van Ittersum et. al. (van Ittersum et. al., 2013). This datafile holds the results for rainfed soybean.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Al-Bitar, Ahmad; Veronika, Antonenko;

    Wheat Biomass for Kherson and Poltava regions in Ukraine The dataset contains Dry Above Ground Biomass (DAM) estimates over the Kherson and Poltava regions in Ukraine for years 2020,2021 and 2022. - Processing:The processing is done using the AgriCarbon-EOv1.5 processing chain, using the TREX processing centre at CNES France.The input remote sensing data are L2A Sentinel-2 surface reflectances provided by the MAJA processing chain based on the Copernicus Sentinel-2 L1C data.The Landcover maps are provided using ML Deep learning based on the Copernicus L2A data.The daily weather data is extracted from ERA5Land products (C3S). -Geophysical variable:Dry Above ground biomass of winter wheat in g/m2. - Extents: * DAM estimates over the Copernicus Sentinel-2 tile 36TWT cover the Kherson region.* DAM estimates over the Copernicus Sentinel-2 tile 36UVA cover the Poltava region. - Spatial resolution:10m resolution estimlates over wheat plots identified in the landcover map. - Temporal coverage:Estimates are provided at the end of the wheat cycle for cycles:* The year 2020 correspond to cycle: 2019-2020* The year 2021 corresponds to cycle : 2020-2021* The year 2022 corresponds to cycle : 2021-2022 - Projection: EPSG:32636 - File content: Each Raster file has 2 bands containing respectively: * band1: mean value of DAM in g/m2. * band2: standard deviation of DAM in g/m2. - List of maps:* Dry_aboveground_biomass_2020_T36TWT_Kherson_Ukraine.tif* Dry_aboveground_biomass_2020_T36UVA_Poltava_Ukraine.tif* Dry_aboveground_biomass_2021_T36TWT_Kherson_Ukraine.tif* Dry_aboveground_biomass_2021_T36UVA_Poltava_Ukraine.tif* Dry_aboveground_biomass_2022_T36TWT_Kherson_Ukraine.tif* Dry_aboveground_biomass_2022_T36UVA_Poltava_Ukraine.tif

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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Dataset . 2024
    License: CC BY
    Data sources: ZENODO
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: Datacite
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      ZENODO
      Dataset . 2024
      License: CC BY
      Data sources: ZENODO
  • Authors: Groot, Hugo de;

    The Global Yield Gap Atlas project (GYGA - http://yieldgap.org ) has undertaken a yield gap assessment following the protocol recommended by van Ittersum et. al. (van Ittersum et. al., 2013). This datafile holds the results for rainfed rice.

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    Authors: Wolfe, Kennedy David; Desbiens, Amelia; Mumby, Peter;

    Patterns of movement of marine species can reflect strategies of reproduction and dispersal, species’ interactions, trophodynamics, and susceptibility to change, and thus critically inform how we manage populations and ecosystems. On coral reefs, the density and diversity of metazoan taxa is greatest in dead coral and rubble, which is suggested to fuel food webs from the bottom-up. Yet, biomass and secondary productivity in rubble is predominantly available in some of the smallest individuals, limiting how accessible this energy is to higher trophic levels. We address the bioavailability of motile coral reef cryptofauna based on small-scale patterns of emigration in rubble. We deployed modified RUbble Biodiversity Samplers (RUBS) and emergence traps in a shallow rubble patch at Heron Island, Great Barrier Reef, to detect community-level differences in the directional influx of motile cryptofauna under five habitat accessibility regimes. The mean density (0.13–4.5 ind.cm-3) and biomass (0.14–5.2 mg.cm-3) of cryptofauna were high and varied depending on microhabitat accessibility. Emergent zooplankton represented a distinct community (dominated by the Appendicularia and Calanoida) with the lowest density and biomass, indicating constraints on nocturnal resource availability. Mean cryptofauna density and biomass were greatest when interstitial access within rubble was blocked, driven by the rapid proliferation of small harpacticoid copepods from the rubble surface, leading to trophic simplification. Individuals with high biomass (e.g., decapods, gobies, and echinoderms) were greatest when interstitial access within rubble was unrestricted. Treatments with a closed rubble surface did not differ from those completely open, suggesting that top-down predation does not diminish rubble-derived resources. Our results show that conspecific cues and species’ interactions (e.g., competition and predation) within rubble are most critical in shaping ecological outcomes within the cryptobiome. These findings have implications for prey accessibility through trophic and community size structuring in rubble, which may become increasingly relevant as benthic reef complexity shifts in the Anthropocene. We address the bioavailability of coral reef cryptofauna in rubble based on small-scale patterns of emigration. We adapted the accessibility of Rubble Biodiversity Samplers (RUBS), models used to standardise biodiversity sampling in rubble (Wolfe and Mumby 2020), to explore the local movement patterns of rubble-dwelling fauna, with inference to predation processes within and beyond the cryptobenthos. Five treatments were developed to detect community-level differences in the directional influx of motile cryptofauna under various habitat accessibility regimes. Four of these treatments were developed by modifying accessibility into RUBS (https://www.thingiverse.com/thing:4176644/files) to understand limitations on the directional influx and movement of cryptofauna within coral rubble patches using four treatments; (1) open (completely accessible), (2) interstitial access (top closed), (3) surficial access (sides and bottom closed), and (4) raised (above rubble substratum). The fifth treatment involved a series of emergence plankton traps, designed to target demersal cryptofauna that vertically migrate from within the rubble benthos at night, given emergent zooplankton biomass and diversity are greatest at night. Fieldwork was conducted over several weeks (11th September to 5th October 2021) in a shallow (~3–5 m depth) reef slope site on the southern margin of Heron Island (-23˚26.845’ S, 151˚54.732’ E), Great Barrier Reef, Australia (Fig. 1). All collections were conducted under the Great Barrier Reef Marine Park Authority permit G20/44613.1.

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    ZENODO
    Dataset . 2023
    License: CC 0
    Data sources: ZENODO
    DRYAD
    Dataset . 2023
    License: CC 0
    Data sources: Datacite
    0
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      ZENODO
      Dataset . 2023
      License: CC 0
      Data sources: ZENODO
      DRYAD
      Dataset . 2023
      License: CC 0
      Data sources: Datacite
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    Authors: Coni, Ericka O C; Nagelkerken, Ivan; Ferreira, Camilo M; Connell, Sean D; +1 Authors

    Poleward range extensions by warm-adapted sea urchins are switching temperate marine ecosystems from kelp-dominated to barren-dominated systems that favour the establishment of range-extending tropical fishes. Yet, such tropicalization may be buffered by ocean acidification, which reduces urchin grazing performance and the urchin barrens that tropical range-extending fishes prefer. Using ecosystems experiencing natural warming and acidification, we show that ocean acidification could buffer warming-facilitated tropicalization by reducing urchin populations (by 87%) and inhibiting the formation of barrens. This buffering effect of CO2 enrichment was observed at natural CO2 vents that are associated with a shift from a barren-dominated to a turf-dominated state, which we found is less favourable to tropical fishes. Together, these observations suggest that ocean acidification may buffer the tropicalization effect of ocean warming against urchin barren formation via multiple processes (fewer urchins and barrens) and consequently slow the increasing rate of tropicalization of temperate fish communities. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-07-26.

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    B2FIND
    Dataset . 2021
    Data sources: B2FIND
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    PANGAEA
    Dataset . 2021
    License: CC BY
    Data sources: PANGAEA
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    PANGAEA
    Dataset . 2021
    Data sources: PANGAEA
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      B2FIND
      Dataset . 2021
      Data sources: B2FIND
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      PANGAEA
      Dataset . 2021
      License: CC BY
      Data sources: PANGAEA
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      PANGAEA
      Dataset . 2021
      Data sources: PANGAEA
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    Authors: Garlick, Cathy; Förch, Wiebke;

    This dataset contains files produced for and generated from the CCAFS Household Baseline Study carried out in sites in Latin America (Trifinio in Honduras/Guatemala, and Cauca in Colombia) and in South-East Asia (a site in each of Cambodia, Laos and Vietnam) in the latter months of 2014 and the early months of 2015. There are six sites in all (two sites from Trifinio). Before downloading any of the files, particularly the data files, please download and read the CCAFS ReadMe file which is prefixed by the code 0000. To gain access to the GPS coordinates from the restricted files please download and complete the Non-disclosure agreement from the file "0002 Non-Disclosure Agreement 2013-01-20.pdf" and send this to Wiebke Foerch at w.foerch@cgiar.org The study was based on earlier baseline studies carried out in sites in West and East Africa and in South Asia. Data and other files from these earlier studies are available in a separate dataset in this Dataverse archive. (CCAFS Household Baseline Survey 2010-2012). If you are intending to use data from both studies together we suggest you read the file "0001 Questionnaire Differences & Recoding Details 2015-10-29.pdf" which explains differences between the two studies.

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    Harvard Dataverse
    Dataset . 2015
    Data sources: Datacite
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      Harvard Dataverse
      Dataset . 2015
      Data sources: Datacite
  • Authors: Groot, Hugo de;

    The Global Yield Gap Atlas project (GYGA - http://yieldgap.org ) has undertaken a yield gap assessment following the protocol recommended by van Ittersum et. al. (van Ittersum et. al., 2013). This datafile holds the results for rainfed sugarcane.

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    Authors: Timmerman, Charles-Andre; Giraldo, Carolina; Cresson, Pierre; Ernande, Bruno; +4 Authors

    This dataset gathers data used to determine the temporal variability of couplings between pelagic and benthic habitats for fish assemblages at five periods. Organic matter fluxes were assessed using stable isotopes analysis. Species relative biomass was considered to explore energy fluxes within the fish assemblage

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    https://dx.doi.org/10.17882/76...
    Dataset . 2020
    License: CC BY
    Data sources: Datacite
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    SEANOE
    Dataset . 2020
    License: CC BY
    Data sources: SEANOE
    B2FIND
    Dataset . 2020
    Data sources: B2FIND
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      https://dx.doi.org/10.17882/76...
      Dataset . 2020
      License: CC BY
      Data sources: Datacite
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      SEANOE
      Dataset . 2020
      License: CC BY
      Data sources: SEANOE
      B2FIND
      Dataset . 2020
      Data sources: B2FIND
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    Authors: Kyle M. Dittmer; Sadie Shelton; Sessie Burns; Eva (Lini) Wollenberg;

    This document contains a review of global digital resources relevant to climate-informed agroecological transitions. The purpose of the review was to catalog relevant digital resources and assess their role in inclusive knowledge development, with special attention to farmers’ co-creation of knowledge for on-the-ground practices. To this end, we identified existing digital tools relevant to technical advisory and performance assessment and reviewed their functions (i.e., the purpose of using a tool) against indicators for exemplary features (i.e., the channels in which a user can engage with the tool) that could support socially inclusive, climate-informed agroecological transitions.<br><br> Metodology:To evaluate exemplary features of agricultural digital tools – defined here as an app, online resource (not platforms), or other software available on a digital device (e.g., phone, smartphone, computer, etc.), including those that are language, audio, and visually based – we developed 87 indicators (see Indicators Explained) relating to seven categories: (i) performance assessment, (ii) technological specifications, (iii) social inclusion and co-creation, (iv) scaling, (v) climate change adaptation, mitigation and whether the tool calculates greenhouse gas emissions, and (vi) agroecological principles Exemplariness was defined in this review as best fitting the requirements of the target users and best addressing agroecological and climate change mitigation and/or adaption outcomes. All indicators for categories i-v were developed and validated via several rounds of internal reviews and expert consultations. The 12 agroecological indicators (i.e., principles) were adopted and refined from the FAO 10 Elements of Agroecology (FAO, 2018), HLPE (HLPE, 2019) and TAPE (FAO, 2019) reports. Sixty (60) tools were selected for a full review against the 87 indicators based on their applicability to provide technical advisory and/or performance assessment on climate-informed agroecological transitions. Tools were classified as technical advisory resources if they delivered any recommendations regarding farming practices and as performance assessment resources if they included review of farm status or operations. Tools were mostly identified via Google searches, expert interviews, and platforms such as the CGIAR Evidence Clearing House and Digital Agri Hub. Each tool was reviewed by one analyst by accessing the tool, when available, or by reviewing materials online. A second analyst validated individual indicator responses when subjectivity in responses was an issue. Indicators were marked as ‘unknown’ when subjectivity in responses persisted or when information was not available.

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    Harvard Dataverse
    Dataset . 2022
    Data sources: Datacite
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      Harvard Dataverse
      Dataset . 2022
      Data sources: Datacite
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    Authors: Fedra Trujillano; G. Jiménez; Luis Edgar Tarazona-Manrique; Najat F. Kahamba; +5 Authors

    Abstract Background In the near future, the incidence of mosquito-borne diseases may expand to new sites due to changes in temperature and rainfall patterns caused by climate change. Therefore, there is a need to use recent technological advances to improve vector surveillance methodologies. Unoccupied Aerial Vehicles (UAVs), often called drones, have been used to collect high-resolution imagery to map detailed information on mosquito habitats and direct control measures to specific areas. Supervised classification approaches have been largely used to automatically detect vector habitats. However, manual data labelling for model training limits their use for rapid responses. Open-source foundation models such as the Meta AI Segment Anything Model (SAM) can facilitate the manual digitalization of high-resolution images. This pre-trained model can assist in extracting features of interest in a diverse range of images. Here, we evaluated the performance of SAM through the Samgeo package, a Python-based wrapper for geospatial data, as it has not been applied to analyse remote sensing images for epidemiological studies. Results We tested the identification of two land cover classes of interest: water bodies and human settlements, using different UAV acquired imagery across five malaria-endemic areas in Africa, South America, and Southeast Asia. We employed manually placed point prompts and text prompts associated with specific classes of interest to guide the image segmentation and assessed the performance in the different geographic contexts. An average Dice coefficient value of 0.67 was obtained for buildings segmentation and 0.73 for water bodies using point prompts. Regarding the use of text prompts, the highest Dice coefficient value reached 0.72 for buildings and 0.70 for water bodies. Nevertheless, the performance was closely dependent on each object, landscape characteristics and selected words, resulting in varying performance. Conclusions Recent models such as SAM can potentially assist manual digitalization of imagery by vector control programs, quickly identifying key features when surveying an area of interest. However, accurate segmentation still requires user-provided manual prompts and corrections to obtain precise segmentation. Further evaluations are necessary, especially for applications in rural areas.

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    International Journal of Health Geographics
    Article . 2024 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    https://dx.doi.org/10.60692/78...
    Other literature type . 2024
    Data sources: Datacite
    https://dx.doi.org/10.60692/z1...
    Other literature type . 2024
    Data sources: Datacite
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      International Journal of Health Geographics
      Article . 2024 . Peer-reviewed
      License: CC BY
      Data sources: Crossref
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      https://dx.doi.org/10.60692/78...
      Other literature type . 2024
      Data sources: Datacite
      https://dx.doi.org/10.60692/z1...
      Other literature type . 2024
      Data sources: Datacite
  • Authors: Groot, Hugo de;

    The Global Yield Gap Atlas project (GYGA - http://yieldgap.org ) has undertaken a yield gap assessment following the protocol recommended by van Ittersum et. al. (van Ittersum et. al., 2013). This datafile holds the results for rainfed soybean.

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