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Abstract Chemical contamination has impaired ecosystems, reducing biodiversity and the provisioning of functions and services. This has spurred a movement to restore contaminated ecosystems and develop and implement national and international regulations that require it. Nevertheless, ecological restoration remains a young and rapidly growing discipline and its intersection with toxicology is even more nascent and underdeveloped. Consequently, we provide guidance to scientists and practitioners on when, where, and how to restore contaminated ecosystems. Although restoration has many benefits, it also can be expensive, and in many cases systems can recover without human intervention. Hence, the first question we address is: “When should we restore contaminated ecosystems?” Second, we provide suggestions on what to restore—biodiversity, functions, services, all 3, or something else—and where to restore given expected changes to habitats driven by global climate change. Finally, we provide guidance on how to restore contaminated ecosystems. To do this, we analyze critical aspects of the literature dealing with the ecology of restoring contaminated ecosystems. Additionally, we review approaches for translating the science of restoration to on-the-ground actions, which includes discussions of market incentives and the finances of restoration, stakeholder outreach and governance models for ecosystem restoration, and working with contractors to implement restoration plans. By explicitly considering the mechanisms and strategies that maximize the success of the restoration of contaminated sites, we hope that our synthesis serves to increase and improve collaborations between restoration ecologists and ecotoxicologists and set a roadmap for the restoration of contaminated ecosystems. Integr Environ Assess Manag 2016;12:273–283. © 2015 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals, Inc. on behalf of SETAC Key Points We merge insights from ecological and economic theory and on-the-ground restoration activities to provide guidance on what endpoints should be targeted for restoration in contaminated ecosystems and when, where, and how to restore ecosystems degraded by contaminants. We encourage practitioners to consider restoration as early as possible (i.e., before injury or before remediation) and to restore both structural and functional endpoints. We also promote consideration of broader landscape and seascape contexts and new ideas and approaches that can overcome the scientific and financial limitations of restoration. We urge more reciprocal transfer of knowledge among theorist and practitioners and academics, industry, government, tribal organizations, NGOs and the public to improve the science of restoration.

Abstract Chemical contamination has impaired ecosystems, reducing biodiversity and the provisioning of functions and services. This has spurred a movement to restore contaminated ecosystems and develop and implement national and international regulations that require it. Nevertheless, ecological restoration remains a young and rapidly growing discipline and its intersection with toxicology is even more nascent and underdeveloped. Consequently, we provide guidance to scientists and practitioners on when, where, and how to restore contaminated ecosystems. Although restoration has many benefits, it also can be expensive, and in many cases systems can recover without human intervention. Hence, the first question we address is: “When should we restore contaminated ecosystems?” Second, we provide suggestions on what to restore—biodiversity, functions, services, all 3, or something else—and where to restore given expected changes to habitats driven by global climate change. Finally, we provide guidance on how to restore contaminated ecosystems. To do this, we analyze critical aspects of the literature dealing with the ecology of restoring contaminated ecosystems. Additionally, we review approaches for translating the science of restoration to on-the-ground actions, which includes discussions of market incentives and the finances of restoration, stakeholder outreach and governance models for ecosystem restoration, and working with contractors to implement restoration plans. By explicitly considering the mechanisms and strategies that maximize the success of the restoration of contaminated sites, we hope that our synthesis serves to increase and improve collaborations between restoration ecologists and ecotoxicologists and set a roadmap for the restoration of contaminated ecosystems. Integr Environ Assess Manag 2016;12:273–283. © 2015 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals, Inc. on behalf of SETAC Key Points We merge insights from ecological and economic theory and on-the-ground restoration activities to provide guidance on what endpoints should be targeted for restoration in contaminated ecosystems and when, where, and how to restore ecosystems degraded by contaminants. We encourage practitioners to consider restoration as early as possible (i.e., before injury or before remediation) and to restore both structural and functional endpoints. We also promote consideration of broader landscape and seascape contexts and new ideas and approaches that can overcome the scientific and financial limitations of restoration. We urge more reciprocal transfer of knowledge among theorist and practitioners and academics, industry, government, tribal organizations, NGOs and the public to improve the science of restoration.

Large quantities of carbon are stored in alpine grassland of the Tibetan Plateau, which is extremely sensitive to climate change. However, it remains unclear whether soil organic matter (SOM) in different layers responds to climate change analogously, and whether microbial communities play vital roles in SOM turnover of topsoil. In this study we measured and collected SOM turnover by the 14C method in alpine grassland to test climatic effects on SOM turnover in soil profiles. Edaphic properties and microbial communities in the northwestern Qinghai Lake were investigated to explore microbial influence on SOM turnover. SOM turnover in surface soil (0–10 cm) was more sensitive to precipitation than that in subsurface layers (10–40 cm). Precipitation also imposed stronger effects on the composition of microbial communities in the surface layer than that in deeper soil. At the 5–10 cm depth, the SOM turnover rate was positively associated with the bacteria/fungi biomass ratio and the relative abundance of Acidobacteria, both of which are related to precipitation. Partial correlation analysis suggested that increased precipitation could accelerate the SOM turnover rate in topsoil by structuring soil microbial communities. Conversely, carbon stored in deep soil would be barely affected by climate change. Our results provide valuable insights into the dynamics and storage of SOM in alpine grasslands under future climate scenarios.

Large quantities of carbon are stored in alpine grassland of the Tibetan Plateau, which is extremely sensitive to climate change. However, it remains unclear whether soil organic matter (SOM) in different layers responds to climate change analogously, and whether microbial communities play vital roles in SOM turnover of topsoil. In this study we measured and collected SOM turnover by the 14C method in alpine grassland to test climatic effects on SOM turnover in soil profiles. Edaphic properties and microbial communities in the northwestern Qinghai Lake were investigated to explore microbial influence on SOM turnover. SOM turnover in surface soil (0–10 cm) was more sensitive to precipitation than that in subsurface layers (10–40 cm). Precipitation also imposed stronger effects on the composition of microbial communities in the surface layer than that in deeper soil. At the 5–10 cm depth, the SOM turnover rate was positively associated with the bacteria/fungi biomass ratio and the relative abundance of Acidobacteria, both of which are related to precipitation. Partial correlation analysis suggested that increased precipitation could accelerate the SOM turnover rate in topsoil by structuring soil microbial communities. Conversely, carbon stored in deep soil would be barely affected by climate change. Our results provide valuable insights into the dynamics and storage of SOM in alpine grasslands under future climate scenarios.

The production of biofuel from cellulosic residues can have both environmental and financial benefits. A particular benefit is that it can alleviate competition for land conventionally used for food and feed production. In this research, we investigate greenhouse gas (GHG) emissions associated with the production of ethanol, biomethane, limonene and digestate from citrus waste, a byproduct of the citrus processing industry. The study represents the first life cycle-based evaluations of citrus waste biorefineries. Two biorefinery configurations are studied—a large biorefinery that converts citrus waste into ethanol, biomethane, limonene and digestate, and a small biorefinery that converts citrus waste into biomethane, limonene and digestate. Ethanol is assumed to be used as E85, displacing gasoline as a light-duty vehicle fuel; biomethane displaces natural gas for electricity generation, limonene displaces acetone in solvents, and digestate from the anaerobic digestion process displaces synthetic fertilizer. System expansion and two allocation methods (energy, market value) are considered to determine emissions of co-products. Considerable GHG reductions would be achieved by producing and utilizing the citrus waste-based products in place of the petroleum-based or other non-renewable products. For the large biorefinery, ethanol used as E85 in light-duty vehicles results in a 134% reduction in GHG emissions compared to gasoline-fueled vehicles when applying a system expansion approach. For the small biorefinery, when electricity is generated from biomethane rather than natural gas, GHG emissions are reduced by 77% when applying system expansion. The life cycle GHG emissions vary substantially depending upon biomethane leakage rate, feedstock GHG emissions and the method to determine emissions assigned to co-products. Among the process design parameters, the biomethane leakage rate is critical, and the ethanol produced in the large biorefinery would not meet EISA’s requirements for cellulosic biofuel if the leakage rate is higher than 9.7%. For the small biorefinery, there are no GHG emission benefits in the production of biomethane if the leakage rate is higher than 11.5%. Compared to system expansion, the use of energy and market value allocation methods generally results in higher estimates of GHG emissions for the primary biorefinery products (i.e., smaller reductions in emissions compared to reference systems).

The production of biofuel from cellulosic residues can have both environmental and financial benefits. A particular benefit is that it can alleviate competition for land conventionally used for food and feed production. In this research, we investigate greenhouse gas (GHG) emissions associated with the production of ethanol, biomethane, limonene and digestate from citrus waste, a byproduct of the citrus processing industry. The study represents the first life cycle-based evaluations of citrus waste biorefineries. Two biorefinery configurations are studied—a large biorefinery that converts citrus waste into ethanol, biomethane, limonene and digestate, and a small biorefinery that converts citrus waste into biomethane, limonene and digestate. Ethanol is assumed to be used as E85, displacing gasoline as a light-duty vehicle fuel; biomethane displaces natural gas for electricity generation, limonene displaces acetone in solvents, and digestate from the anaerobic digestion process displaces synthetic fertilizer. System expansion and two allocation methods (energy, market value) are considered to determine emissions of co-products. Considerable GHG reductions would be achieved by producing and utilizing the citrus waste-based products in place of the petroleum-based or other non-renewable products. For the large biorefinery, ethanol used as E85 in light-duty vehicles results in a 134% reduction in GHG emissions compared to gasoline-fueled vehicles when applying a system expansion approach. For the small biorefinery, when electricity is generated from biomethane rather than natural gas, GHG emissions are reduced by 77% when applying system expansion. The life cycle GHG emissions vary substantially depending upon biomethane leakage rate, feedstock GHG emissions and the method to determine emissions assigned to co-products. Among the process design parameters, the biomethane leakage rate is critical, and the ethanol produced in the large biorefinery would not meet EISA’s requirements for cellulosic biofuel if the leakage rate is higher than 9.7%. For the small biorefinery, there are no GHG emission benefits in the production of biomethane if the leakage rate is higher than 11.5%. Compared to system expansion, the use of energy and market value allocation methods generally results in higher estimates of GHG emissions for the primary biorefinery products (i.e., smaller reductions in emissions compared to reference systems).

Abstract The fungal kingdom represents an extraordinary diversity of organisms with profound impacts across animal, plant, and ecosystem health. Fungi simultaneously support life, by forming beneficial symbioses with plants and producing life-saving medicines, and bring death, by causing devastating diseases in humans, plants, and animals. With climate change, increased antimicrobial resistance, global trade, environmental degradation, and novel viruses altering the impact of fungi on health and disease, developing new approaches is now more crucial than ever to combat the threats posed by fungi and to harness their extraordinary potential for applications in human health, food supply, and environmental remediation. To address this aim, the Canadian Institute for Advanced Research (CIFAR) and the Burroughs Wellcome Fund convened a workshop to unite leading experts on fungal biology from academia and industry to strategize innovative solutions to global challenges and fungal threats. This report provides recommendations to accelerate fungal research and highlights the major research advances and ideas discussed at the meeting pertaining to 5 major topics: (1) Connections between fungi and climate change and ways to avert climate catastrophe; (2) Fungal threats to humans and ways to mitigate them; (3) Fungal threats to agriculture and food security and approaches to ensure a robust global food supply; (4) Fungal threats to animals and approaches to avoid species collapse and extinction; and (5) Opportunities presented by the fungal kingdom, including novel medicines and enzymes.