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Sugar beet (Beta vulgaris ssp. vulgaris) is an important crop of temperate climates which provides nearly 30% of the world's annual sugar production and is a source for bioethanol and animal feed. The species belongs to the order of Caryophylalles, is diploid with 2n = 18 chromosomes, has an estimated genome size of 714-758 megabases and shares an ancient genome triplication with other eudicot plants. Leafy beets have been cultivated since Roman times, but sugar beet is one of the most recently domesticated crops. It arose in the late eighteenth century when lines accumulating sugar in the storage root were selected from crosses made with chard and fodder beet. Here we present a reference genome sequence for sugar beet as the first non-rosid, non-asterid eudicot genome, advancing comparative genomics and phylogenetic reconstructions. The genome sequence comprises 567 megabases, of which 85% could be assigned to chromosomes. The assembly covers a large proportion of the repetitive sequence content that was estimated to be 63%. We predicted 27,421 protein-coding genes supported by transcript data and annotated them on the basis of sequence homology. Phylogenetic analyses provided evidence for the separation of Caryophyllales before the split of asterids and rosids, and revealed lineage-specific gene family expansions and losses. We sequenced spinach (Spinacia oleracea), another Caryophyllales species, and validated features that separate this clade from rosids and asterids. Intraspecific genomic variation was analysed based on the genome sequences of sea beet (Beta vulgaris ssp. maritima; progenitor of all beet crops) and four additional sugar beet accessions. We identified seven million variant positions in the reference genome, and also large regions of low variability, indicating artificial selection. The sugar beet genome sequence enables the identification of genes affecting agronomically relevant traits, supports molecular breeding and maximizes the plant's potential in energy biotechnology.

Judged by their negative nutrient balances, low soil cover and low productivity, the predominant agro-pastoral farming systems in the Sudano-Sahelian zone of West Africa are highly unsustainable for crop production intensification. With kaolinite as the main clay type, the cation exchange capacity of the soils in this region, often less than 1 cmolc kg−1soil, depends heavily on the organic carbon (Corg) content. However, due to low carbon sequestration and to the microbe, termite and temperature-induced rapid turnover rates of organic material in the present land-use systems, Corg contents of the topsoil are very low, ranging between 1 and 8 g kg-1 in most soils. For sustainable food production, the availability of phosphorus (P) and nitrogen (N) has to be increased considerably in combination with an improvement in soil physical properties. Therefore, the adoption of innovative management options that help to stop or even reverse the decline in Corg typically observed after cultivating bush or rangeland is of utmost importance. To maintain food production for a rapidly growing population, targeted applications of mineral fertilisers and the effective recycling of organic amendments as crop residues and manure are essential. Any increase in soil cover has large effects in reducing topsoil erosion by wind and water and favours the accumulation of wind-blown dust high in bases which in turn improves P availability. In the future decision support systems, based on GIS, modelling and simulation should be used to combine (i) available fertiliser response data from on-station and on-farm research, (ii) results on soil productivity restoration with the application of mineral and organic amendments and (iii) our present understanding of the cause-effect relationships governing the prevailing soil degradation processes. This will help to predict the effectiveness of regionally differentiated soil fertility management approaches to maintain or even increase soil Corg levels.

Short-rotation coppice (SRC) Salix plantations have the potential to provide fast-growing biomass feedstock with significant soil and climate mitigation benefits. Salix varieties exhibit significant variation in their physiological traits, growth patterns and soil ecology—but the effects of these variations have rarely been studied from a systems perspective. This study analyses the influence of variety on soil organic carbon (SOC) dynamics and climate impacts from Salix cultivation for heat production for a Swedish site with specific conditions. Soil carbon modelling was combined with a life cycle assessment (LCA) approach to quantify SOC sequestration and climate impacts over a 50-year period. The analysis used data from a Swedish field trial of six Salix varieties grown under fertilized and unfertilized treatments on Vertic Cambisols during 2001–2018. The Salix systems were compared with a reference case where heat is produced from natural gas and green fallow was the land use alternative. Climate impacts were determined using time-dependent LCA methodology—on a land-use (per hectare) and delivered energy unit (per MJheat) basis. All Salix varieties and treatments increased SOC, but the magnitude depended on the variety. Fertilization led to lower carbon sequestration than the equivalent unfertilized case. There was no clear relationship between biomass yield and SOC increase. In comparison with reference cases, all Salix varieties had significant potential for climate change mitigation. From a land-use perspective, high yield was the most important determining factor, followed by SOC sequestration, therefore high-yielding fertilized varieties such as ‘Tordis’, ‘Tora’ and ‘Björn’ performed best. On an energy-delivered basis, SOC sequestration potential was the determining factor for the climate change mitigation effect, with unfertilized ‘Jorr’ and ‘Loden’ outperforming the other varieties. These results show that Salix variety has a strong influence on SOC sequestration potential, biomass yield, growth pattern, response to fertilization and, ultimately, climate impact.

The new GHG calculator named SECTOR (Source-selective and Emission-adjusted GHG CalculaTOR for Cropland) is based on the IPCC Tier 2 approach for rice as well as other crops. The new features of SECTOR facilitate high flexibility in terms of entering newly obtained emission factors, easy data transfer from crop statistics for entering activity data and detailed specifications of GHG scenarios. A new procedure of entering frequency-based data on current water management practices was also developed. Moreover, the tool allows deviating from the 2006 IPCC Guidelines by considering field records with high background levels of N₂O emissions in the overall assessment of GHG emissions. This article assesses different applications of the tool, namely as add-ons to field measurements, for GHG calculation at national/sectorial scale and within measurement, reporting and verification of development projects. SECTOR is downloadable in the form of templates that can be used to develop custom versions with varying levels of disaggregated data entries at different scales. A case study for rice production in one Vietnamese province demonstrates the potential to display GHG results in combination with GIS. SECTOR can easily be adjusted to incorporate new emission factors and calculation procedures expected in forthcoming revisions of the IPCC Guidelines.

River deltas and estuaries are disproportionally-significant coastal landforms that are inhabited by nearly 600 M people globally. In recent history, rapid socio-economic development has dramatically changed many of the World's mega deltas, which have typically undergone agricultural intensification and expansion, land-use change, urbanization, water resources engineering and exploitation of natural resources. As a result, mega deltas have evolved into complex and potentially vulnerable socio-ecological systems with unique threats and coping capabilities. The goal of this research was to establish a holistic understanding of threats, resilience, and adaptation for four mega deltas of variable geography and levels of socio-economic development, namely the Mekong, Yellow River, Yangtze, and Rhine deltas. Compiling this kind of information is critical for managing and developing these complex coastal areas sustainably but is typically hindered by a lack of consistent quantitative data across the ecological, social and economic sectors. To overcome this limitation, we adopted a qualitative approach, where delta characteristics across all sectors were assessed through systematic expert surveys. This approach enabled us to generate a comparative assessment of threats, resilience, and resilience-strengthening adaptation across the four deltas. Our assessment provides novel insights into the various components that dominate the overall risk situation in each delta and, for the first time, illustrates how each of these components differ across the four mega deltas. As such, our findings can guide a more detailed, sector specific, risk assessment or assist in better targeting the implementation of risk mitigation and adaptation strategies.

Glaciers are retreating globally, and the resulting ice-free areas provide an experimental system for understanding species colonization patterns, community formation, and dynamics. The last several years have seen crucial advances in our understanding of biotic colonization after glacier retreats, resulting from the integration of methodological innovations and ecological theories. Recent empirical studies have demonstrated how multiple factors can speed up or slow down the velocity of colonization and have helped scientists develop theoretical models that describe spatiotemporalchanges in community structure. There is a growing awareness of how different processes (e.g., time since glacier retreat, onset or interruption of surface processes, abiotic factors, dispersal, biotic interactions) interact to shape community formation and, ultimately, their functional structure through succession. Here, we examine how these studies address key theoretical questions about community dynamics and show how classical approaches are increasingly being combined with environmental DNA metabarcoding and functional trait analysis to document the formation of multitrophic communities, revolutionizing our understanding of the biotic processes that occur following glacier retreat.