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Sugar beet (Beta vulgaris ssp. vulgaris) is an important crop of temperate climates which provides nearly 30% of the world's annual sugar production and is a source for bioethanol and animal feed. The species belongs to the order of Caryophylalles, is diploid with 2n = 18 chromosomes, has an estimated genome size of 714-758 megabases and shares an ancient genome triplication with other eudicot plants. Leafy beets have been cultivated since Roman times, but sugar beet is one of the most recently domesticated crops. It arose in the late eighteenth century when lines accumulating sugar in the storage root were selected from crosses made with chard and fodder beet. Here we present a reference genome sequence for sugar beet as the first non-rosid, non-asterid eudicot genome, advancing comparative genomics and phylogenetic reconstructions. The genome sequence comprises 567 megabases, of which 85% could be assigned to chromosomes. The assembly covers a large proportion of the repetitive sequence content that was estimated to be 63%. We predicted 27,421 protein-coding genes supported by transcript data and annotated them on the basis of sequence homology. Phylogenetic analyses provided evidence for the separation of Caryophyllales before the split of asterids and rosids, and revealed lineage-specific gene family expansions and losses. We sequenced spinach (Spinacia oleracea), another Caryophyllales species, and validated features that separate this clade from rosids and asterids. Intraspecific genomic variation was analysed based on the genome sequences of sea beet (Beta vulgaris ssp. maritima; progenitor of all beet crops) and four additional sugar beet accessions. We identified seven million variant positions in the reference genome, and also large regions of low variability, indicating artificial selection. The sugar beet genome sequence enables the identification of genes affecting agronomically relevant traits, supports molecular breeding and maximizes the plant's potential in energy biotechnology.

Sugar beet (Beta vulgaris ssp. vulgaris) is an important crop of temperate climates which provides nearly 30% of the world's annual sugar production and is a source for bioethanol and animal feed. The species belongs to the order of Caryophylalles, is diploid with 2n = 18 chromosomes, has an estimated genome size of 714-758 megabases and shares an ancient genome triplication with other eudicot plants. Leafy beets have been cultivated since Roman times, but sugar beet is one of the most recently domesticated crops. It arose in the late eighteenth century when lines accumulating sugar in the storage root were selected from crosses made with chard and fodder beet. Here we present a reference genome sequence for sugar beet as the first non-rosid, non-asterid eudicot genome, advancing comparative genomics and phylogenetic reconstructions. The genome sequence comprises 567 megabases, of which 85% could be assigned to chromosomes. The assembly covers a large proportion of the repetitive sequence content that was estimated to be 63%. We predicted 27,421 protein-coding genes supported by transcript data and annotated them on the basis of sequence homology. Phylogenetic analyses provided evidence for the separation of Caryophyllales before the split of asterids and rosids, and revealed lineage-specific gene family expansions and losses. We sequenced spinach (Spinacia oleracea), another Caryophyllales species, and validated features that separate this clade from rosids and asterids. Intraspecific genomic variation was analysed based on the genome sequences of sea beet (Beta vulgaris ssp. maritima; progenitor of all beet crops) and four additional sugar beet accessions. We identified seven million variant positions in the reference genome, and also large regions of low variability, indicating artificial selection. The sugar beet genome sequence enables the identification of genes affecting agronomically relevant traits, supports molecular breeding and maximizes the plant's potential in energy biotechnology.

38 Pags.- 3 Figs. The definitive version is available at: http://link.springer.com/journal/13593 Dryland areas cover about 41 % of the Earth’s surface and sustain over 2 billion inhabitants. Soil carbon (C) in dryland areas is of crucial importance to maintain soil quality and productivity and a range of ecosystem services. Soil mismanagement has led to a significant loss of carbon in these areas, which in many of them entailed several land degradation processes such as soil erosion, reduction in crop productivity, lower soil water holding capacity, a decline in soil biodiversity, and, ultimately, desertification, hunger and poverty in developing countries. As a consequence, in dryland areas proper management practices and land use policies need to be implemented to increase the amount of C sequestered in the soil. When properly managed, dryland soils have a great potential to sequester carbon if financial incentives for implementation are provided. Dryland soils contain the largest pool of inorganic C. However, contrasting results are found in the literature on the magnitude of inorganic C sequestration under different management regimes. The rise of atmospheric carbon dioxide (CO2) levels will greatly affect dryland soils, since the positive effect of CO2 on crop productivity will be offset by a decrease of precipitation, thus increasing the susceptibility to soil erosion and crop failure. In dryland agriculture, any removal of crop residues implies a loss of soil organic carbon (SOC). Therefore, the adoption of no-tillage practices in field crops and growing cover crops in tree crops have a great potential in dryland areas due to the associated benefits of maintaining the soil surface covered by crop residues. Up to 80 % reduction in soil erosion has been reported when using no-tillage compared with conventional tillage. However, no-tillage must be maintained over the long term to enhance soil macroporosity and offset the emission of nitrous oxide (N2O) associated to the greater amount of water stored in the soil when no-tillage is used. Furthermore, the use of long fallow periods appears to be an inefficient practice for water conservation, since only 10–35 % of the rainfall received is available for the next crop when fallow is included in the rotation. Nevertheless, conservation agriculture practices are unlikely to be adopted in some developing countries where the need of crop residues for soil protection competes with other uses. Crop rotations, cover crops, crop residue retention, and conservation agriculture have a direct positive impact on biodiversity and other ecosystem services such as weed seed predation, abundance and distribution of a broad range of soil organisms, and bird nesting density and success. The objective of sequestering a significant amount of C in dryland soils is attainable and will result in social and environmental benefits. This work has been partially supported by the Spanish Ministry of Economy and Competitiveness (grants AGL 2013-49062-C4-1-R and AGL 2013-49062-C4-4-R). Peer reviewed

38 Pags.- 3 Figs. The definitive version is available at: http://link.springer.com/journal/13593 Dryland areas cover about 41 % of the Earth’s surface and sustain over 2 billion inhabitants. Soil carbon (C) in dryland areas is of crucial importance to maintain soil quality and productivity and a range of ecosystem services. Soil mismanagement has led to a significant loss of carbon in these areas, which in many of them entailed several land degradation processes such as soil erosion, reduction in crop productivity, lower soil water holding capacity, a decline in soil biodiversity, and, ultimately, desertification, hunger and poverty in developing countries. As a consequence, in dryland areas proper management practices and land use policies need to be implemented to increase the amount of C sequestered in the soil. When properly managed, dryland soils have a great potential to sequester carbon if financial incentives for implementation are provided. Dryland soils contain the largest pool of inorganic C. However, contrasting results are found in the literature on the magnitude of inorganic C sequestration under different management regimes. The rise of atmospheric carbon dioxide (CO2) levels will greatly affect dryland soils, since the positive effect of CO2 on crop productivity will be offset by a decrease of precipitation, thus increasing the susceptibility to soil erosion and crop failure. In dryland agriculture, any removal of crop residues implies a loss of soil organic carbon (SOC). Therefore, the adoption of no-tillage practices in field crops and growing cover crops in tree crops have a great potential in dryland areas due to the associated benefits of maintaining the soil surface covered by crop residues. Up to 80 % reduction in soil erosion has been reported when using no-tillage compared with conventional tillage. However, no-tillage must be maintained over the long term to enhance soil macroporosity and offset the emission of nitrous oxide (N2O) associated to the greater amount of water stored in the soil when no-tillage is used. Furthermore, the use of long fallow periods appears to be an inefficient practice for water conservation, since only 10–35 % of the rainfall received is available for the next crop when fallow is included in the rotation. Nevertheless, conservation agriculture practices are unlikely to be adopted in some developing countries where the need of crop residues for soil protection competes with other uses. Crop rotations, cover crops, crop residue retention, and conservation agriculture have a direct positive impact on biodiversity and other ecosystem services such as weed seed predation, abundance and distribution of a broad range of soil organisms, and bird nesting density and success. The objective of sequestering a significant amount of C in dryland soils is attainable and will result in social and environmental benefits. This work has been partially supported by the Spanish Ministry of Economy and Competitiveness (grants AGL 2013-49062-C4-1-R and AGL 2013-49062-C4-4-R). Peer reviewed

13 p. + 2 p. (Erratum) We assessed the effects of nutrient enrichment on three stream ecosystems running through distinct biomes (Mediterranean, Pampean and Andean). We increased the concentrations of N and P in the stream water 1.6–4-fold following a before–after control–impact paired series (BACIPS) design in each stream, and evaluated changes in the biomass of bacteria, primary producers, invertebrates and fish in the enriched (E) versus control (C) reaches after nutrient addition through a predictive-BACIPS approach. The treatment produced variable biomass responses (2–77% of explained variance) among biological communities and streams. The greatest biomass response was observed for algae in the Andean stream (77% of the variance), although fish also showed important biomass responses (about 9–48%). The strongest biomass response to enrichment (77% in all biological compartments) was found in the Andean stream. The magnitude and seasonality of biomass responses to enrichment were highly site specific, often depending on the basal nutrient concentration and on windows of ecological opportunity (periods when environmental constraints other than nutrients do not limit biomass growth). The Pampean stream, with high basal nutrient concentrations, showed a weak response to enrichment (except for invertebrates), whereas the greater responses of Andean stream communities were presumably favored by wider windows of ecological opportunity in comparison to those from the Mediterranean stream. Despite variation among sites, enrichment globally stimulated the algal-based food webs (algae and invertebrate grazers) but not the detritus-based food webs (bacteria and invertebrate shredders). This study shows that nutrient enrichment tends to globally enhance the biomass of stream biological assemblages, but that its magnitude and extent within the food web are complex and are strongly determined by environmental factors and ecosystem structure. This study was funded by the project GLOBRIO of the Banco Bilbao Vizcaya Argentaria (BBVA) Foundation. Additional funding was obtained from the projects SCARCE (Consolider Ingenio 2010, CSD2009-00065) and CARBONET (CGL2011-30474-C02-01) of the Spanish Ministry of Science and Innovation.