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  • Energy Research
  • 15. Life on land
  • AU
  • GB
  • CA
  • University of Queensland

  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Wolfe, Kennedy David; Desbiens, Amelia; Mumby, Peter;

    Patterns of movement of marine species can reflect strategies of reproduction and dispersal, species’ interactions, trophodynamics, and susceptibility to change, and thus critically inform how we manage populations and ecosystems. On coral reefs, the density and diversity of metazoan taxa is greatest in dead coral and rubble, which is suggested to fuel food webs from the bottom-up. Yet, biomass and secondary productivity in rubble is predominantly available in some of the smallest individuals, limiting how accessible this energy is to higher trophic levels. We address the bioavailability of motile coral reef cryptofauna based on small-scale patterns of emigration in rubble. We deployed modified RUbble Biodiversity Samplers (RUBS) and emergence traps in a shallow rubble patch at Heron Island, Great Barrier Reef, to detect community-level differences in the directional influx of motile cryptofauna under five habitat accessibility regimes. The mean density (0.13–4.5 ind.cm-3) and biomass (0.14–5.2 mg.cm-3) of cryptofauna were high and varied depending on microhabitat accessibility. Emergent zooplankton represented a distinct community (dominated by the Appendicularia and Calanoida) with the lowest density and biomass, indicating constraints on nocturnal resource availability. Mean cryptofauna density and biomass were greatest when interstitial access within rubble was blocked, driven by the rapid proliferation of small harpacticoid copepods from the rubble surface, leading to trophic simplification. Individuals with high biomass (e.g., decapods, gobies, and echinoderms) were greatest when interstitial access within rubble was unrestricted. Treatments with a closed rubble surface did not differ from those completely open, suggesting that top-down predation does not diminish rubble-derived resources. Our results show that conspecific cues and species’ interactions (e.g., competition and predation) within rubble are most critical in shaping ecological outcomes within the cryptobiome. These findings have implications for prey accessibility through trophic and community size structuring in rubble, which may become increasingly relevant as benthic reef complexity shifts in the Anthropocene. We address the bioavailability of coral reef cryptofauna in rubble based on small-scale patterns of emigration. We adapted the accessibility of Rubble Biodiversity Samplers (RUBS), models used to standardise biodiversity sampling in rubble (Wolfe and Mumby 2020), to explore the local movement patterns of rubble-dwelling fauna, with inference to predation processes within and beyond the cryptobenthos. Five treatments were developed to detect community-level differences in the directional influx of motile cryptofauna under various habitat accessibility regimes. Four of these treatments were developed by modifying accessibility into RUBS (https://www.thingiverse.com/thing:4176644/files) to understand limitations on the directional influx and movement of cryptofauna within coral rubble patches using four treatments; (1) open (completely accessible), (2) interstitial access (top closed), (3) surficial access (sides and bottom closed), and (4) raised (above rubble substratum). The fifth treatment involved a series of emergence plankton traps, designed to target demersal cryptofauna that vertically migrate from within the rubble benthos at night, given emergent zooplankton biomass and diversity are greatest at night. Fieldwork was conducted over several weeks (11th September to 5th October 2021) in a shallow (~3–5 m depth) reef slope site on the southern margin of Heron Island (-23˚26.845’ S, 151˚54.732’ E), Great Barrier Reef, Australia (Fig. 1). All collections were conducted under the Great Barrier Reef Marine Park Authority permit G20/44613.1.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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    ZENODO
    Dataset . 2023
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    DRYAD
    Dataset . 2023
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      ZENODO
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      DRYAD
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      Data sources: Datacite
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    Authors: Watson, James; Challinor, Andrew J.; Fricker, Thomas E.; Ferro, Christopher A. T.;

    Understanding the relationship between climate and crop productivity is a key component of projections of future food production, and hence assessments of food security. Climate models and crop yield datasets have errors, but the effects of these errors on regional scale crop models is not well categorized and understood. In this study we compare the effect of synthetic errors in temperature and precipitation observations on the hindcast skill of a process-based crop model and a statistical crop model. We find that errors in temperature data have a significantly stronger influence on both models than errors in precipitation. We also identify key differences in the responses of these models to different types of input data error. Statistical and process-based model responses differ depending on whether synthetic errors are overestimates or underestimates. We also investigate the impact of crop yield calibration data on model skill for both models, using datasets of yield at three different spatial scales. Whilst important for both models, the statistical model is more strongly influenced by crop yield scale than the process-based crop model. However, our results question the value of high resolution yield data for improving the skill of crop models; we find a focus on accuracy to be more likely to be valuable. For both crop models, and for all three spatial scales of yield calibration data, we found that model skill is greatest where growing area is above 10-15 %. Thus information on area harvested would appear to be a priority for data collection efforts. These results are important for three reasons. First, understanding how different crop models rely on different characteristics of temperature, precipitation and crop yield data allows us to match the model type to the available data. Second, we can prioritize where improvements in climate and crop yield data should be directed. Third, as better climate and crop yield data becomes available, we can predict how crop model skill should improve.

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    Climatic Change
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    Climatic Change
    Article . 2014 . Peer-reviewed
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      Climatic Change
      Article . 2014 . Peer-reviewed
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Duarte de Paula Costa, Micheli; Adame, Maria Fernanda; Bryant, Catherine V.; Hill, Jack; +10 Authors

    Vegetated coastal ecosystems, in particular mangroves, tidal marshes and seagrasses are highly efficient at sequestering and storing carbon, making them valuable assets for climate change mitigation and adaptation. The state of Queensland, in northeastern Australia, contains almost half of the total area of these blue carbon ecosystems in the country, yet there are few detailed regional or state-wide assessments of their total sedimentary organic carbon (SOC) stocks. We compiled existing SOC data and used boosted regression tree models to evaluate the influence of environmental variables in explaining the variability in SOC stocks, and to produce spatially explicit blue carbon estimates. The final models explained 75 % (for mangroves and tidal marshes) and 65 % (for seagrasses) of the variability in SOC stocks. Total SOC stocks in the state of Queensland were estimated at 569 ± 98 Tg C (173 ± 32 Tg C, 232 ± 50 Tg C, and 164 ± 16 Tg C from mangroves, tidal marshes and seagrasses, respectively). Regional predictions for each of Queensland's eleven Natural Resource Management regions revealed that 60 % of the state's SOC stocks occurred within three regions (Cape York, Torres Strait and Southern Gulf Natural Resource Management regions) due to a combination of high values of SOC stocks and large areas of coastal wetlands. Protected areas in Queensland play an important role in conserving SOC assets in Queensland's coastal wetlands. For example, ~19 Tg C within terrestrial protected areas, ~27 Tg C within marine protected areas and ~ 40 Tg C within areas of matters of State Environmental Significance. Using multi-decadal (1987-2020) mapped distributions of mangroves in Queensland; we found that mangrove area increased by approximately 30,000 ha from 1987 to 2020, which led to temporal fluctuations in mangrove plant and SOC stocks. We estimated that plant stocks decreased from ~45 Tg C in 1987 to ~34.2 Tg C in 2020, while SOC stocks remained relatively constant from ~107.9 Tg C in 1987 to 108.0 Tg C in 2020. Considering the level of current protection, emissions from mangrove deforestation are potentially very low; therefore, representing minor opportunities for mangrove blue carbon projects in the region. Our study provides much needed information on current trends in carbon stocks and their conservation in Queensland's coastal wetlands, while also contributing to guide future management actions, including blue carbon restoration projects.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao The Science of The T...arrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    The Science of The Total Environment
    Article . 2023 . Peer-reviewed
    License: Elsevier TDM
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao The Science of The T...arrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      The Science of The Total Environment
      Article . 2023 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Runting, Rebecca; Bryan, Brett; Dee, Laura; Maseyk, Fleur; +6 Authors

    AbstractClimate change is having a significant impact on ecosystem services and is likely to become increasingly important as this phenomenon intensifies. Future impacts can be difficult to assess as they often involve long timescales, dynamic systems with high uncertainties, and are typically confounded by other drivers of change. Despite a growing literature on climate change impacts on ecosystem services, no quantitative syntheses exist. Hence, we lack an overarching understanding of the impacts of climate change, how they are being assessed, and the extent to which other drivers, uncertainties, and decision making are incorporated. To address this, we systematically reviewed the peer‐reviewed literature that assesses climate change impacts on ecosystem services at subglobal scales. We found that the impact of climate change on most types of services was predominantly negative (59% negative, 24% mixed, 4% neutral, 13% positive), but varied across services, drivers, and assessment methods. Although uncertainty was usually incorporated, there were substantial gaps in the sources of uncertainty included, along with the methods used to incorporate them. We found that relatively few studies integrated decision making, and even fewer studies aimed to identify solutions that were robust to uncertainty. For management or policy to ensure the delivery of ecosystem services, integrated approaches that incorporate multiple drivers of change and account for multiple sources of uncertainty are needed. This is undoubtedly a challenging task, but ignoring these complexities can result in misleading assessments of the impacts of climate change, suboptimal management outcomes, and the inefficient allocation of resources for climate adaptation.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Global Change Biolog...arrow_drop_down
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    Global Change Biology
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    Global Change Biology
    Article . 2016 . Peer-reviewed
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      Global Change Biology
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  • Authors: Leon, Javier X.; Hardcastle, James; James, Robyn; Albert, Simon; +2 Authors

    Coastal communities in the Coral Triangle are increasingly threatened by climate change. Sea-level rise (SLR) will result in biophysical and socioeconomic impacts that could increase the loss of livelihoods, cultural heritage and infrastructure. Effective adaptation requires a holistic approach that incorporates scientific knowledge together with local and traditional knowledge. Community-based adaptation built on local knowledge is of great value for environmental management, particularly when scientific data are lacking. This article reports a case study that integrated traditional and scientific knowledge using participatory three-dimensional modeling (P3DM) in BoeBoe village, Solomon Islands. P3DM is a process by which members of the local community build a physical terrain model and overlay it with the location of important resources such as protected areas or harvesting sites. Additionally, SLR inundation scenarios based on surveyed elevations were incorporated into a geographic information system (GIS), allowing for a real-time integration of science with local knowledge. Despite discrepancies in scales and accuracy, information from both the P3DM and GIS were complementary. The process, itself, provided a forum for discussion between many members of the village who would normally not be involved and highlighted the importance of community engagement when building capacity for adaptation to climate change.

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    Authors: Carissa J. Klein; Nicholas H. Wolff; Alan T. White; Eric A. Treml; +6 Authors

    AbstractMultinational conservation initiatives that prioritize investment across a region invariably navigate trade-offs among multiple objectives. It seems logical to focus where several objectives can be achieved efficiently, but such multi-objective hotspots may be ecologically inappropriate, or politically inequitable. Here we devise a framework to facilitate a regionally cohesive set of marine-protected areas driven by national preferences and supported by quantitative conservation prioritization analyses, and illustrate it using the Coral Triangle Initiative. We identify areas important for achieving six objectives to address ecosystem representation, threatened fauna, connectivity and climate change. We expose trade-offs between areas that contribute substantially to several objectives and those meeting one or two objectives extremely well. Hence there are two strategies to guide countries choosing to implement regional goals nationally: multi-objective hotspots and complementary sets of single-objective priorities. This novel framework is applicable to any multilateral or global initiative seeking to apply quantitative information in decision making.

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    Nature Communications
    Article . 2015 . Peer-reviewed
    License: CC BY
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    Nature Communications
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      Nature Communications
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    Authors: Michael Bode; Oscar Venter; Oscar Venter; Lex Hovani; +1 Authors

    AbstractREDD+ presents novel options for conservation in the tropics, yet it is unclear how biodiversity‐focused organizations or actors should react to these carbon‐focused opportunities. Here, we critically assess for the first time the expected outcomes of five contrasting scenarios of engagement between a biodiversity actor and REDD+. We discover that in the Berau regency, Indonesia, it is usually beneficial for a biodiversity actor to react in some way to REDD+, but the preferred reaction depends on whether a REDD+ project is already developing in the region, and the scale and type of conservation objectives. In general, from a strict biodiversity perspective, the most cost efficient reaction to the presence of REDD+ is to use biodiversity funds to protect areas neglected by REDD+. Our results demonstrate that if biodiversity actors fail to adapt the way they pursue conservation in the tropics, REDD+ opportunities could go largely untapped.

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    Conservation Letters
    Article . 2013 . Peer-reviewed
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      Conservation Letters
      Article . 2013 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Bender, D.; Diaz-Pulido, G.; Dove, S.;

    As marine ecosystems are predicted to be facing increases in both temperature and CO2 levels, resulting in increased acidity, scientific research is attempting to predict the effect that the altered environmental conditions will have on species, communities and, ultimately, ecosystems. This study focused on elevated temperature and ocean acidification effects on the ubiquitous, yet often overlooked, turf algal assemblages on the Great Barrier Reef, Australia. In order to assess possible changes in relative abundance of species, biomass and productivity, 3 different levels of pH and 2 different levels of temperature treatments were applied to shallow water turf algal assemblages in a multifactorial (orthogonal) experiment. The eukaryotic component of the algal assemblages showed differential responses to combinations of pH and temperature treatments. The response was however dominated by a strong increase in the relative abundance of Lyngbya, a cyanobacterium, under acidification and higher temperature treatment levels, while other cyanobacteria, such as the Rivulariaceae, did not respond to the altered environment. Possible explanations for this observation may be differences in nitrogen fixation capacity and/or temperature optima. The biomass of the algal assemblages remained stable under all treatment levels, while changes in productivity associated with an interaction of the factors were observed. The findings of this experimental study highlight the complexity of turf algal assemblages in their composition and in their response to altered environmental conditions. However, they also support the dominant theoretical physiological predictions for eukaryotic and prokaryotic turf algae that suggest a positive or neutral response to future environmental conditions.

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    Marine Ecology Progress Series
    Article . 2014 . Peer-reviewed
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      Marine Ecology Progress Series
      Article . 2014 . Peer-reviewed
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    Authors: Abdi Tunggal Priyanto;

    Coral reefs are vulnerable to the impacts of global climate change (e.g rising sea temperature) as well as to numerous local disturbances (e.g overfishing). In combination, these impacts are known to degrade coral reefs, compromising critical ecosystem functions and leading to the potential loss of biodiversity and associated ecosystem services. Management aims to minimise these negative effects but is challenged by substantial uncertainty about the relative contribution and interactions among the various types of stressors on coral reefs. One of the most widely applied management tools on coral reefs are Marine Protected Areas (MPAs). MPAs restrict certain or all types of human activities within their boundaries and are aimed at rebuilding degraded habitats, maintaining ecosystem functions, and protecting healthy reefs to ensure the continued provision of ecosystem services. However, using MPAs effectively requires an understanding of their optimal placement to ensure the conservation of biodiversity and ecological functions in support of local communities and stakeholders. My thesis addresses this topic by developing a novel marine spatial planning approach that integrates reef ecosystem services explicitly into the decision-making process.The first chapter of my thesis is a general introduction that provides an overview of current scientific knowledge about the vulnerability of coral reefs and how these ecosystems are likely to respond to various impacts from global and local stressors. Chapter 2 is focused on investigating the response of coral communities to global and local disturbances more explicitly by using an ecological model to examine the impacts of sea surface temperature, local thermal stress, cyclone, fishing pressure, nutrient enrichment and crown of thorns starfish (CoTS) outbreaks on reefs under alternative climate scenarios by examining applied to Indonesian coral reefs. We used three greenhouse gas emissions (Representative concentration pathway - RCP8.5, RCP4.5, and RCP2.6) for the scenarios of climate change. Reefs are likely to experience further declines in coral cover under all alternative scenarios of climate change and local thermal regimes, but with varied rates of decline in different geographic locations. Management benefits were greater under the more pessimistic greenhouse gas emission scenario RCP8.5 and management of two local stressors with complementary ecological targets (i.e., coral recruitment and adult mortality) provided greater benefits than utilizing tools with similar modes of action. For example, combining approaches that targeted CoTS and either fishing or nutrients, that affect adult mortality and recruitment (respectively), had far greater efficacy than targeting the duality of fishing and nutrients, which both influence recruitment only. The results provide new insight into the importance of applying management tools that address different ecological processes.In Chapter 3, I establish a generally applicable MPA design approach to reconcile multiple reef ecosystem services under explicit consideration of local community needs. Using Selayar Island, South Sulawesi (Indonesia) as a case study, I found that the design of MPAs to address all three ecosystem services – biodiversity, fisheries productivity, and coastal protection – proved challenging. Relatively few reefs exhibit high values of all three services and optimization software is needed to seek network locations that achieve reasonable trade-offs between services. Local fishers valued fisheries benefits over biodiversity and coastal protection. Finding MPA networks that deliver fishers’ preferences was particularly difficult if attempting to include the highest levels of fisheries benefit. Compromising on the magnitude of fishery benefits provided much greater flexibility in the choice of MPA networks that delivered moderately high benefits across all services. Moreover, it becomes more challenging to find good solutions as the target level of MPA coverage increases from 10% to 30%, implying that fewer good solutions occur.In Chapter 4, I examine the extent to which governance factors and management processes, such as involvement of the local community in conservation planning and prior experience with MPAs, influence the perceived benefits of MPAs for fisheries. I incorporate governance factors and preferred MPA distribution based on interviews of local fisher communities. The results reveal that the better engagement of the community into the MPA planning process and governance of MPAs lead to a more positive perception of MPA benefits by fishers. Yet fishers’ perceptions of MPAs were more nuanced. Generally, the perceptions were less positive (1) in fishers that fish more frequently, and (2) fishers operating larger boats that include pelagic fishing (cf. fishers using small-scale artisanal methods). It is hypothesized that pelagic fishers are less invested in the benefits of MPAs and that fishers operating more frequently might be less likely to notice modest changes in productivity should it occur.I also asked whether fishers with a more positive perception of MPA benefits would be more likely to locate future MPAs closer to their fishing grounds. However, this simple hypothesis was not supported. Fishers in Selayar recommend a minimum average distance of ~5 km of MPAs from fishing grounds while people involved in MPA planning tended to suggest distances about 8 km farther from fishing grounds. The absence of a simple relationship between fisher perceptions and the separation of MPA-fishing grounds implies that other – unmeasured – factors are responsible. In general, our findings emphasize the importance of incorporating governance processes and social factors into MPA designation.In Chapter 5, I review my conclusions and consider their broader implications and needs for further work. Prioritising multiple reefs for multiple ecosystem services is challenging and therefore the use of optimisation software is necessary to find suites of MPAs that can meet such diverse objectives. A willingness to compromise on the absolute magnitude of fisheries benefits – the ecosystem service of the greatest value to the community – led to far greater flexibility in finding MPA solutions. Overall, tackling more complex sets of objectives is feasible but requires the use of standard optimisation software to select reasonable solutions. Yet management implementation, such as MPA design, requires good governance and an increasing reliance on sophisticated tools has the potential to undermine the transparency and inclusivity of the implementation process. Future studies will need to consider the communication of tools usage as well as the development of frameworks to apply the tools effectively.

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    https://doi.org/10.14264/87131...
    Doctoral thesis . 2020 . Peer-reviewed
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      https://doi.org/10.14264/87131...
      Doctoral thesis . 2020 . Peer-reviewed
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Steve W. Adkins; Ian D. Radford; Darren J. Kriticos; Darren J. Kriticos; +4 Authors

    This paper describes a process-based metapopulation dynamics and phenology model of prickly acacia, Acacia nilotica, an invasive alien species in Australia. The model, SPAnDX, describes the interactions between riparian and upland sub-populations of A. nilotica within livestock paddocks, including the effects of extrinsic factors such as temperature, soil moisture availability and atmospheric concentrations of carbon dioxide. The model includes the effects of management events such as changing the livestock species or stocking rate, applying fire, and herbicide application. The predicted population behaviour of A. nilotica was sensitive to climate. Using 35 years daily weather datasets for five representative sites spanning the range of conditions that A. nilotica is found in Australia, the model predicted biomass levels that closely accord with expected values at each site. SPAnDX can be used as a decision-support tool in integrated weed management, and to explore the sensitivity of cultural management practices to climate change throughout the range of A. nilotica. The cohort-based DYMEX modelling package used to build and run SPAnDX provided several advantages over more traditional population modelling approaches (e.g. an appropriate specific formalism (discrete time, cohort-based, process-oriented), user-friendly graphical environment, extensible library of reusable components, and useful and flexible input/output support framework).

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    Ecological Modelling
    Article . 2003 . Peer-reviewed
    License: Elsevier TDM
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Ecological Modellingarrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Ecological Modelling
      Article . 2003 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Wolfe, Kennedy David; Desbiens, Amelia; Mumby, Peter;

    Patterns of movement of marine species can reflect strategies of reproduction and dispersal, species’ interactions, trophodynamics, and susceptibility to change, and thus critically inform how we manage populations and ecosystems. On coral reefs, the density and diversity of metazoan taxa is greatest in dead coral and rubble, which is suggested to fuel food webs from the bottom-up. Yet, biomass and secondary productivity in rubble is predominantly available in some of the smallest individuals, limiting how accessible this energy is to higher trophic levels. We address the bioavailability of motile coral reef cryptofauna based on small-scale patterns of emigration in rubble. We deployed modified RUbble Biodiversity Samplers (RUBS) and emergence traps in a shallow rubble patch at Heron Island, Great Barrier Reef, to detect community-level differences in the directional influx of motile cryptofauna under five habitat accessibility regimes. The mean density (0.13–4.5 ind.cm-3) and biomass (0.14–5.2 mg.cm-3) of cryptofauna were high and varied depending on microhabitat accessibility. Emergent zooplankton represented a distinct community (dominated by the Appendicularia and Calanoida) with the lowest density and biomass, indicating constraints on nocturnal resource availability. Mean cryptofauna density and biomass were greatest when interstitial access within rubble was blocked, driven by the rapid proliferation of small harpacticoid copepods from the rubble surface, leading to trophic simplification. Individuals with high biomass (e.g., decapods, gobies, and echinoderms) were greatest when interstitial access within rubble was unrestricted. Treatments with a closed rubble surface did not differ from those completely open, suggesting that top-down predation does not diminish rubble-derived resources. Our results show that conspecific cues and species’ interactions (e.g., competition and predation) within rubble are most critical in shaping ecological outcomes within the cryptobiome. These findings have implications for prey accessibility through trophic and community size structuring in rubble, which may become increasingly relevant as benthic reef complexity shifts in the Anthropocene. We address the bioavailability of coral reef cryptofauna in rubble based on small-scale patterns of emigration. We adapted the accessibility of Rubble Biodiversity Samplers (RUBS), models used to standardise biodiversity sampling in rubble (Wolfe and Mumby 2020), to explore the local movement patterns of rubble-dwelling fauna, with inference to predation processes within and beyond the cryptobenthos. Five treatments were developed to detect community-level differences in the directional influx of motile cryptofauna under various habitat accessibility regimes. Four of these treatments were developed by modifying accessibility into RUBS (https://www.thingiverse.com/thing:4176644/files) to understand limitations on the directional influx and movement of cryptofauna within coral rubble patches using four treatments; (1) open (completely accessible), (2) interstitial access (top closed), (3) surficial access (sides and bottom closed), and (4) raised (above rubble substratum). The fifth treatment involved a series of emergence plankton traps, designed to target demersal cryptofauna that vertically migrate from within the rubble benthos at night, given emergent zooplankton biomass and diversity are greatest at night. Fieldwork was conducted over several weeks (11th September to 5th October 2021) in a shallow (~3–5 m depth) reef slope site on the southern margin of Heron Island (-23˚26.845’ S, 151˚54.732’ E), Great Barrier Reef, Australia (Fig. 1). All collections were conducted under the Great Barrier Reef Marine Park Authority permit G20/44613.1.

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    Authors: Watson, James; Challinor, Andrew J.; Fricker, Thomas E.; Ferro, Christopher A. T.;

    Understanding the relationship between climate and crop productivity is a key component of projections of future food production, and hence assessments of food security. Climate models and crop yield datasets have errors, but the effects of these errors on regional scale crop models is not well categorized and understood. In this study we compare the effect of synthetic errors in temperature and precipitation observations on the hindcast skill of a process-based crop model and a statistical crop model. We find that errors in temperature data have a significantly stronger influence on both models than errors in precipitation. We also identify key differences in the responses of these models to different types of input data error. Statistical and process-based model responses differ depending on whether synthetic errors are overestimates or underestimates. We also investigate the impact of crop yield calibration data on model skill for both models, using datasets of yield at three different spatial scales. Whilst important for both models, the statistical model is more strongly influenced by crop yield scale than the process-based crop model. However, our results question the value of high resolution yield data for improving the skill of crop models; we find a focus on accuracy to be more likely to be valuable. For both crop models, and for all three spatial scales of yield calibration data, we found that model skill is greatest where growing area is above 10-15 %. Thus information on area harvested would appear to be a priority for data collection efforts. These results are important for three reasons. First, understanding how different crop models rely on different characteristics of temperature, precipitation and crop yield data allows us to match the model type to the available data. Second, we can prioritize where improvements in climate and crop yield data should be directed. Third, as better climate and crop yield data becomes available, we can predict how crop model skill should improve.

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    Climatic Change
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    Authors: Duarte de Paula Costa, Micheli; Adame, Maria Fernanda; Bryant, Catherine V.; Hill, Jack; +10 Authors

    Vegetated coastal ecosystems, in particular mangroves, tidal marshes and seagrasses are highly efficient at sequestering and storing carbon, making them valuable assets for climate change mitigation and adaptation. The state of Queensland, in northeastern Australia, contains almost half of the total area of these blue carbon ecosystems in the country, yet there are few detailed regional or state-wide assessments of their total sedimentary organic carbon (SOC) stocks. We compiled existing SOC data and used boosted regression tree models to evaluate the influence of environmental variables in explaining the variability in SOC stocks, and to produce spatially explicit blue carbon estimates. The final models explained 75 % (for mangroves and tidal marshes) and 65 % (for seagrasses) of the variability in SOC stocks. Total SOC stocks in the state of Queensland were estimated at 569 ± 98 Tg C (173 ± 32 Tg C, 232 ± 50 Tg C, and 164 ± 16 Tg C from mangroves, tidal marshes and seagrasses, respectively). Regional predictions for each of Queensland's eleven Natural Resource Management regions revealed that 60 % of the state's SOC stocks occurred within three regions (Cape York, Torres Strait and Southern Gulf Natural Resource Management regions) due to a combination of high values of SOC stocks and large areas of coastal wetlands. Protected areas in Queensland play an important role in conserving SOC assets in Queensland's coastal wetlands. For example, ~19 Tg C within terrestrial protected areas, ~27 Tg C within marine protected areas and ~ 40 Tg C within areas of matters of State Environmental Significance. Using multi-decadal (1987-2020) mapped distributions of mangroves in Queensland; we found that mangrove area increased by approximately 30,000 ha from 1987 to 2020, which led to temporal fluctuations in mangrove plant and SOC stocks. We estimated that plant stocks decreased from ~45 Tg C in 1987 to ~34.2 Tg C in 2020, while SOC stocks remained relatively constant from ~107.9 Tg C in 1987 to 108.0 Tg C in 2020. Considering the level of current protection, emissions from mangrove deforestation are potentially very low; therefore, representing minor opportunities for mangrove blue carbon projects in the region. Our study provides much needed information on current trends in carbon stocks and their conservation in Queensland's coastal wetlands, while also contributing to guide future management actions, including blue carbon restoration projects.

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    The Science of The Total Environment
    Article . 2023 . Peer-reviewed
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      The Science of The Total Environment
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    Authors: Runting, Rebecca; Bryan, Brett; Dee, Laura; Maseyk, Fleur; +6 Authors

    AbstractClimate change is having a significant impact on ecosystem services and is likely to become increasingly important as this phenomenon intensifies. Future impacts can be difficult to assess as they often involve long timescales, dynamic systems with high uncertainties, and are typically confounded by other drivers of change. Despite a growing literature on climate change impacts on ecosystem services, no quantitative syntheses exist. Hence, we lack an overarching understanding of the impacts of climate change, how they are being assessed, and the extent to which other drivers, uncertainties, and decision making are incorporated. To address this, we systematically reviewed the peer‐reviewed literature that assesses climate change impacts on ecosystem services at subglobal scales. We found that the impact of climate change on most types of services was predominantly negative (59% negative, 24% mixed, 4% neutral, 13% positive), but varied across services, drivers, and assessment methods. Although uncertainty was usually incorporated, there were substantial gaps in the sources of uncertainty included, along with the methods used to incorporate them. We found that relatively few studies integrated decision making, and even fewer studies aimed to identify solutions that were robust to uncertainty. For management or policy to ensure the delivery of ecosystem services, integrated approaches that incorporate multiple drivers of change and account for multiple sources of uncertainty are needed. This is undoubtedly a challenging task, but ignoring these complexities can result in misleading assessments of the impacts of climate change, suboptimal management outcomes, and the inefficient allocation of resources for climate adaptation.

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    Global Change Biology
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    Global Change Biology
    Article . 2016 . Peer-reviewed
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  • Authors: Leon, Javier X.; Hardcastle, James; James, Robyn; Albert, Simon; +2 Authors

    Coastal communities in the Coral Triangle are increasingly threatened by climate change. Sea-level rise (SLR) will result in biophysical and socioeconomic impacts that could increase the loss of livelihoods, cultural heritage and infrastructure. Effective adaptation requires a holistic approach that incorporates scientific knowledge together with local and traditional knowledge. Community-based adaptation built on local knowledge is of great value for environmental management, particularly when scientific data are lacking. This article reports a case study that integrated traditional and scientific knowledge using participatory three-dimensional modeling (P3DM) in BoeBoe village, Solomon Islands. P3DM is a process by which members of the local community build a physical terrain model and overlay it with the location of important resources such as protected areas or harvesting sites. Additionally, SLR inundation scenarios based on surveyed elevations were incorporated into a geographic information system (GIS), allowing for a real-time integration of science with local knowledge. Despite discrepancies in scales and accuracy, information from both the P3DM and GIS were complementary. The process, itself, provided a forum for discussion between many members of the village who would normally not be involved and highlighted the importance of community engagement when building capacity for adaptation to climate change.

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    Authors: Carissa J. Klein; Nicholas H. Wolff; Alan T. White; Eric A. Treml; +6 Authors

    AbstractMultinational conservation initiatives that prioritize investment across a region invariably navigate trade-offs among multiple objectives. It seems logical to focus where several objectives can be achieved efficiently, but such multi-objective hotspots may be ecologically inappropriate, or politically inequitable. Here we devise a framework to facilitate a regionally cohesive set of marine-protected areas driven by national preferences and supported by quantitative conservation prioritization analyses, and illustrate it using the Coral Triangle Initiative. We identify areas important for achieving six objectives to address ecosystem representation, threatened fauna, connectivity and climate change. We expose trade-offs between areas that contribute substantially to several objectives and those meeting one or two objectives extremely well. Hence there are two strategies to guide countries choosing to implement regional goals nationally: multi-objective hotspots and complementary sets of single-objective priorities. This novel framework is applicable to any multilateral or global initiative seeking to apply quantitative information in decision making.

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    Nature Communications
    Article . 2015 . Peer-reviewed
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      Nature Communications
      Article . 2015 . Peer-reviewed
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    Authors: Michael Bode; Oscar Venter; Oscar Venter; Lex Hovani; +1 Authors

    AbstractREDD+ presents novel options for conservation in the tropics, yet it is unclear how biodiversity‐focused organizations or actors should react to these carbon‐focused opportunities. Here, we critically assess for the first time the expected outcomes of five contrasting scenarios of engagement between a biodiversity actor and REDD+. We discover that in the Berau regency, Indonesia, it is usually beneficial for a biodiversity actor to react in some way to REDD+, but the preferred reaction depends on whether a REDD+ project is already developing in the region, and the scale and type of conservation objectives. In general, from a strict biodiversity perspective, the most cost efficient reaction to the presence of REDD+ is to use biodiversity funds to protect areas neglected by REDD+. Our results demonstrate that if biodiversity actors fail to adapt the way they pursue conservation in the tropics, REDD+ opportunities could go largely untapped.

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    Conservation Letters
    Article . 2013 . Peer-reviewed
    License: Wiley Online Library User Agreement
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      Conservation Letters
      Article . 2013 . Peer-reviewed
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    Authors: Bender, D.; Diaz-Pulido, G.; Dove, S.;

    As marine ecosystems are predicted to be facing increases in both temperature and CO2 levels, resulting in increased acidity, scientific research is attempting to predict the effect that the altered environmental conditions will have on species, communities and, ultimately, ecosystems. This study focused on elevated temperature and ocean acidification effects on the ubiquitous, yet often overlooked, turf algal assemblages on the Great Barrier Reef, Australia. In order to assess possible changes in relative abundance of species, biomass and productivity, 3 different levels of pH and 2 different levels of temperature treatments were applied to shallow water turf algal assemblages in a multifactorial (orthogonal) experiment. The eukaryotic component of the algal assemblages showed differential responses to combinations of pH and temperature treatments. The response was however dominated by a strong increase in the relative abundance of Lyngbya, a cyanobacterium, under acidification and higher temperature treatment levels, while other cyanobacteria, such as the Rivulariaceae, did not respond to the altered environment. Possible explanations for this observation may be differences in nitrogen fixation capacity and/or temperature optima. The biomass of the algal assemblages remained stable under all treatment levels, while changes in productivity associated with an interaction of the factors were observed. The findings of this experimental study highlight the complexity of turf algal assemblages in their composition and in their response to altered environmental conditions. However, they also support the dominant theoretical physiological predictions for eukaryotic and prokaryotic turf algae that suggest a positive or neutral response to future environmental conditions.

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    Marine Ecology Progress Series
    Article . 2014 . Peer-reviewed
    Data sources: Crossref
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      Marine Ecology Progress Series
      Article . 2014 . Peer-reviewed
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    Authors: Abdi Tunggal Priyanto;

    Coral reefs are vulnerable to the impacts of global climate change (e.g rising sea temperature) as well as to numerous local disturbances (e.g overfishing). In combination, these impacts are known to degrade coral reefs, compromising critical ecosystem functions and leading to the potential loss of biodiversity and associated ecosystem services. Management aims to minimise these negative effects but is challenged by substantial uncertainty about the relative contribution and interactions among the various types of stressors on coral reefs. One of the most widely applied management tools on coral reefs are Marine Protected Areas (MPAs). MPAs restrict certain or all types of human activities within their boundaries and are aimed at rebuilding degraded habitats, maintaining ecosystem functions, and protecting healthy reefs to ensure the continued provision of ecosystem services. However, using MPAs effectively requires an understanding of their optimal placement to ensure the conservation of biodiversity and ecological functions in support of local communities and stakeholders. My thesis addresses this topic by developing a novel marine spatial planning approach that integrates reef ecosystem services explicitly into the decision-making process.The first chapter of my thesis is a general introduction that provides an overview of current scientific knowledge about the vulnerability of coral reefs and how these ecosystems are likely to respond to various impacts from global and local stressors. Chapter 2 is focused on investigating the response of coral communities to global and local disturbances more explicitly by using an ecological model to examine the impacts of sea surface temperature, local thermal stress, cyclone, fishing pressure, nutrient enrichment and crown of thorns starfish (CoTS) outbreaks on reefs under alternative climate scenarios by examining applied to Indonesian coral reefs. We used three greenhouse gas emissions (Representative concentration pathway - RCP8.5, RCP4.5, and RCP2.6) for the scenarios of climate change. Reefs are likely to experience further declines in coral cover under all alternative scenarios of climate change and local thermal regimes, but with varied rates of decline in different geographic locations. Management benefits were greater under the more pessimistic greenhouse gas emission scenario RCP8.5 and management of two local stressors with complementary ecological targets (i.e., coral recruitment and adult mortality) provided greater benefits than utilizing tools with similar modes of action. For example, combining approaches that targeted CoTS and either fishing or nutrients, that affect adult mortality and recruitment (respectively), had far greater efficacy than targeting the duality of fishing and nutrients, which both influence recruitment only. The results provide new insight into the importance of applying management tools that address different ecological processes.In Chapter 3, I establish a generally applicable MPA design approach to reconcile multiple reef ecosystem services under explicit consideration of local community needs. Using Selayar Island, South Sulawesi (Indonesia) as a case study, I found that the design of MPAs to address all three ecosystem services – biodiversity, fisheries productivity, and coastal protection – proved challenging. Relatively few reefs exhibit high values of all three services and optimization software is needed to seek network locations that achieve reasonable trade-offs between services. Local fishers valued fisheries benefits over biodiversity and coastal protection. Finding MPA networks that deliver fishers’ preferences was particularly difficult if attempting to include the highest levels of fisheries benefit. Compromising on the magnitude of fishery benefits provided much greater flexibility in the choice of MPA networks that delivered moderately high benefits across all services. Moreover, it becomes more challenging to find good solutions as the target level of MPA coverage increases from 10% to 30%, implying that fewer good solutions occur.In Chapter 4, I examine the extent to which governance factors and management processes, such as involvement of the local community in conservation planning and prior experience with MPAs, influence the perceived benefits of MPAs for fisheries. I incorporate governance factors and preferred MPA distribution based on interviews of local fisher communities. The results reveal that the better engagement of the community into the MPA planning process and governance of MPAs lead to a more positive perception of MPA benefits by fishers. Yet fishers’ perceptions of MPAs were more nuanced. Generally, the perceptions were less positive (1) in fishers that fish more frequently, and (2) fishers operating larger boats that include pelagic fishing (cf. fishers using small-scale artisanal methods). It is hypothesized that pelagic fishers are less invested in the benefits of MPAs and that fishers operating more frequently might be less likely to notice modest changes in productivity should it occur.I also asked whether fishers with a more positive perception of MPA benefits would be more likely to locate future MPAs closer to their fishing grounds. However, this simple hypothesis was not supported. Fishers in Selayar recommend a minimum average distance of ~5 km of MPAs from fishing grounds while people involved in MPA planning tended to suggest distances about 8 km farther from fishing grounds. The absence of a simple relationship between fisher perceptions and the separation of MPA-fishing grounds implies that other – unmeasured – factors are responsible. In general, our findings emphasize the importance of incorporating governance processes and social factors into MPA designation.In Chapter 5, I review my conclusions and consider their broader implications and needs for further work. Prioritising multiple reefs for multiple ecosystem services is challenging and therefore the use of optimisation software is necessary to find suites of MPAs that can meet such diverse objectives. A willingness to compromise on the absolute magnitude of fisheries benefits – the ecosystem service of the greatest value to the community – led to far greater flexibility in finding MPA solutions. Overall, tackling more complex sets of objectives is feasible but requires the use of standard optimisation software to select reasonable solutions. Yet management implementation, such as MPA design, requires good governance and an increasing reliance on sophisticated tools has the potential to undermine the transparency and inclusivity of the implementation process. Future studies will need to consider the communication of tools usage as well as the development of frameworks to apply the tools effectively.

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    https://doi.org/10.14264/87131...
    Doctoral thesis . 2020 . Peer-reviewed
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      https://doi.org/10.14264/87131...
      Doctoral thesis . 2020 . Peer-reviewed
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Steve W. Adkins; Ian D. Radford; Darren J. Kriticos; Darren J. Kriticos; +4 Authors

    This paper describes a process-based metapopulation dynamics and phenology model of prickly acacia, Acacia nilotica, an invasive alien species in Australia. The model, SPAnDX, describes the interactions between riparian and upland sub-populations of A. nilotica within livestock paddocks, including the effects of extrinsic factors such as temperature, soil moisture availability and atmospheric concentrations of carbon dioxide. The model includes the effects of management events such as changing the livestock species or stocking rate, applying fire, and herbicide application. The predicted population behaviour of A. nilotica was sensitive to climate. Using 35 years daily weather datasets for five representative sites spanning the range of conditions that A. nilotica is found in Australia, the model predicted biomass levels that closely accord with expected values at each site. SPAnDX can be used as a decision-support tool in integrated weed management, and to explore the sensitivity of cultural management practices to climate change throughout the range of A. nilotica. The cohort-based DYMEX modelling package used to build and run SPAnDX provided several advantages over more traditional population modelling approaches (e.g. an appropriate specific formalism (discrete time, cohort-based, process-oriented), user-friendly graphical environment, extensible library of reusable components, and useful and flexible input/output support framework).

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    Ecological Modelling
    Article . 2003 . Peer-reviewed
    License: Elsevier TDM
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      Ecological Modelling
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