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  • Authors: Humpula, James F.; Dale, Bruce E.; Balan, Venkatesh; Sousa, Leonardo; +1 Authors

    Development of environmentally sustainable and economically viable technologies for plant cell wall deconstruction to fermentable sugars has been impeded due to native plant cell wall recalcitrance to thermochemical and biological based processing. Lower severity alkaline-based pretreatment processes like Ammonia Fiber Expansion (AFEX™) can overcome several limitations of traditional pretreatment approaches (e.g., acidic pretreatments) to producing cellulosic biofuels and biochemicals. Here, we give an overview of chemical reactions taking place during alkaline pretreatments including reactions between ammonia and polysaccharides/lignin (e.g., ammonolysis, hydrolysis and Maillard-type reactions). AFEX™ based pretreatments enhance enzymatic digestibility and fermentability of lignocellulosic biomass through various chemical and ultra-structural modifications within the cell wall. An improved mechanistic understanding of the AFEX™ process has led to the development of novel alkaline pretreatments that are briefly discussed in this review.

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    Authors: Tung, H.Y. Lim; Limtung, Pierre;

    SARS-COV-2, the etiologic agent of COVID-19 is able to infect cells through its Spike protein (SPp) which must first bind to its receptor ACE2. Most currently developed vaccines target the SARS-COV-2 encoded Spike protein. Many SARS-COV-2 variants have been identified that exhibit several mutations in their Spike protein. SARS-COV-2 variant, B.1.526 was identified in New York, U.S.A. [Annavajhala, M.K. (2021) medRxiv, DOI: 10.1101/2020.02.23.21) and shown to contain the mutations, L5F, T95I, D253G, E484K, S477N, D614G and A701V. T95 and S477 of SPp are phosphorylation sites for a number of Protein kinases, including Cdk1 and GSK-3. Here, through Computerized Structure Model Analysis and Thermodynamic Calculations, it is shown that phosphorylations of T95 and S477 increases the stabilities of SARS-COV-2 encoded SPp-ACE2 and SPp-DC-SIGN complexes with very marginal effects on the binding efficiencies between the components of the complexes, and mutations T95I and S477N antagonize the effects of the phosphorylations of T95 and S477. Thus, it appears that SARS-COV-2 variant, B.1.526 has adapted to exploit the protein phosphorylation apparatus of its host cells to its advantage, and the effects of phosphorylation of of T95 and S477 are blunted through random mutation. Whether Neutralizing Antibodies that target SPp can recognize the phosphorylated forms of SPp is currently unknown.

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    Article . 2021
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    Article . 2021
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    ZENODO
    Article . 2021
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      Article . 2021
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      ZENODO
      Article . 2021
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      Article . 2021
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    Authors: Cánovas Díaz, Enrique; Martí Vega, Antonio; Fuertes Marrón, David; Antolín Fernández, Elisa; +4 Authors

    In this paper we present an optical characterization for quantum dot intermediate band solar cells (QDIBSCs). The cells were developed by growing a stack of ten InAs/GaAs QDs layers between p and n doped GaAs conventional emitters. Electroluminescence, EL, photoreflectance, PR, and transmission electron microscopy, TEM, were applied to the samples in order to test and characterize them optically. The results, derived from the application of the different techniques, showed a good correlation. TEM images revealed a very good structural quality of the QDs, which seem to evolve in shape-strain from the bottom to the top of the stack. Corresponding to the quality observed by TEM, strong signals from EL and PR resolved unambiguously the energy band diagram of the QDIBSCs. By fitting PR data we were able to indentify the coexistence of bands and discrete energy levels coming from the IB material. The PR data evidenced also a strong electric field over the dots, attributed to the space charge region created between the p-n emitters sandwiching the IB material. From EL results, we identified the predominantly radiative nature of the IB material related energy transitions. 23rd European Photovoltaic Solar Energy Conference and Exhibition, 1-5 September 2008, Valencia, Spain; 298-301

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    Recolector de Ciencia Abierta, RECOLECTA
    Conference object . 2009 . Peer-reviewed
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    Archivo Digital UPM
    Conference object . 2009
    License: CC BY NC ND
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      Recolector de Ciencia Abierta, RECOLECTA
      Conference object . 2009 . Peer-reviewed
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      Conference object . 2009
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    Authors: Cairns, John Jr.;

    In 1971, Garrett Hardin published an editorial entitled _Nobody Ever Dies of Overpopulation based on the cyclone that struck East Bengal and killed an estimated 500,000 people. Overcrowding forced people to live in a dangerous place like the Gangetic Delta which is barely above sea level. Now, 37 years later, a similar situation is unfolding in the Ganges River Delta in Bangladesh. This delta is also barely above sea level, and the water keeps rising due to global warming. If a large storm were to create hurricanes in this area housing and agricultural areas would be destroyed as well as power lines and water supply which would interfere with food deliveries and medical assistance. In a worst case scenario environmental refugees could reach 25 million and the death toll could be in the millions. If global climate change was one of the antecedent causes to this worst case scenario, would seal level rise and sever weather truly be the cause of deaths?

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    The current paradigm of global economics with exponential and continuous economic growth is unsustainable as far as Earth system ecology is concerned. To support the Earth system and boost sustainable development, a functional and operational linkage between global ecology and economics should be established – which we term ‘carbonomics’. The simple basis of ‘carbonomics’ is that the more fossil and non-fossil carbon one has as stocks, and not flows, of carbon, the richer one is. This opinion piece makes some suggestions about how we might establish such a balanced relationship. Consilience, No 17 (2017): Issue Seventeen: 2017

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    https://dx.doi.org/10.7916/d8r...
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      https://dx.doi.org/10.7916/d8r...
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    Authors: Chirisa, Innocent; Muzendab, Archimedes;

    This paper explores the feasibility of adopting ecological based planning in low-income residential development. It explicates that in developing countries efforts by housing authorities have been on housing provision irrespective of the environmental threats to sustainability. As these houses are built, future of urban ecology is under threat. The questions regarding this phenomenon are several: how do low-income populations perceive environmental issues of urban settlements? How capable and willing are the local authorities to embrace and apply ecological based planning in residential development? What are the facilitating instruments of ecological-based planning? What are the prospects of integrating ecological based planning to low-income residential development? What are the restraining factors towards embracement of ecological based planning and how best can they be harnessed towards future ecological cities? The case study of Hatcliffe residential area in Harare shows that there are many challenges to overcome uncoordinated planning approaches, ineffective policies and legislative frameworks, weak institutional settings, financial constraints, outdated planning standards and regulations, poverty, lack of environmental stewardship and lack of political will among others. The study findings call for robust environmental conservation strategies, strong environmental stewardship, responsive institutional and funding mechanism backed by realistic legislative frameworks and robust policy rectification. Tema. Journal of Land Use, Mobility and Environment, Vol 7, N° 1 (2014): Smart Cities Challenges: Smart Environment for Sustainable Resource Management

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    Authors: Cairns, John Jr.;

    The United States, which has been the poster child for car culture, has been warned of the unparalleled prospect of trillion-dollar deficits for years to come. Most state governments face severe reduction in tax monies, which will mean fewer funds for road and bridge repair, as well as reductions in other services. Personal debt is very high and home values have declined sharply, reducing the _nest egg of many families for retirement. In addition, the stock market decline has had deleterious effects on retirement funds. The car culture was built on cheap fuel, financing of car purchases, and a convenient national system of mostly free roads connecting nearly all parts of the United States. Personal transportation with cars has been the norm. Petroleum prices are down dramatically at the end of 2008, but people are driving less to pay off personal debt or because they have lost their jobs. Electric cars seemed promising until problems with coal-generated electricity became more generally known. In short, the car culture has passed a tipping point and alternative public transportation is not adequate for probable future needs. One characteristic of passing a tipping point is that return to the pre-tipping point conditions is very unlikely.

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    VTechWorks
    Article . 2009
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      VTechWorks
      Article . 2009
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    Authors: Gaglione, Andrea; Rodenas-Herraiz, David; Jia, Yu; Nawaz, Sarfraz; +3 Authors

    Structural monitoring applications such as corrosion assessment, measurement of concrete temperature or moisture content of critical bridge structures can greatly benefit from the use of wireless sensor networks (WSNs), however energy harvesting for the operation of the network remains a challenge in this setting. We present a multihop vibration-based energy harvesting WSN system for bridge monitoring applications. Our preliminary simulation experiments show that the system is able to maintain energy neutral operation over time, preserving energy with careful management of sleep and communication times.

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    Apollo
    Conference object . 2016
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    Apollo
    Conference object . 2016
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      Apollo
      Conference object . 2016
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      Conference object . 2016
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    Authors: Luca Palmeri; Tommaso Musner; Alberto Barausse; Alberto Zangaglia; +3 Authors

    The loss of coastal habitats is a widespread problem in Europe. To protect the intertidal salt marshes of the lagoon of Venice from the erosion due to natural and human causes which is diffusely and intensely impacting them, the European Commission has funded the demonstrative project LIFE VIMINE. LIFE VIMINE aims to protect the most interior, hard-to-access salt marshes in the northern lagoon of Venice through an integrated approach, whose core is the prevention of erosion through numerous, small but spatially-diffuse soil-bioengineering protections works, mainly placed through semi-manual labour and with low impact on the environment and the landscape. The effectiveness of protection works in the long term is ensured through routine, temporally-continuous and spatially-diffuse actions of monitoring and maintenance. This method contrasts the common approach to managing hydraulic risk and erosion in Italy which is based on large, one-off and irreversible protection actions. The sustainability of the LIFE VIMINE approach is ensured by the participatory involvement of stakeholders and the recognition that protecting salt marshes means defending the benefits they provide to society through their ecological functions, as well as protecting the jobs linked to the existence or conservation of this habitat. EQA - International Journal of Environmental Quality, Vol 18 (2015)

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    EQA
    Article . 2015
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    AMS Acta
    Article . 2015
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      EQA
      Article . 2015
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      Article . 2015
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    Authors: Greenan-Smith, Alyssa; Chua, Sing Teng; Vignolini, Silvia;

    Rapid progress in algal biotechnology has triggered a growing interest in hydrogel-encapsulated microalgal cultivation, especially for the engineering of functional photosynthetic materials and biomass production. An overlooked characteristic of gel-encapsulated cultures is the emergence of cell aggregates, which are the result of the mechanical confinement of the cells. Such aggregates have a dramatic effect on the light management of gel-encapsulated photobioreactors and hence strongly affect the photosynthetic outcome. To evaluate such an effect, we experimentally studied the optical response of hydrogels containing algal aggregates and developed optical simulations to study the resultant light intensity profiles. The simulations are validated experimentally via transmittance measurements using an integrating sphere and aggregate volume analysis with confocal microscopy. Specifically, the heterogeneous distribution of cell aggregates in a hydrogel matrix can increase light penetration while alleviating photoinhibition more effectively than in a flat biofilm. Finally, we demonstrate that light harvesting efficiency can be further enhanced with the introduction of scattering particles within the hydrogel matrix, leading to a four-fold increase in biomass growth. Our study, therefore, highlights a new strategy for the design of spatially efficient photosynthetic living materials that have important implications for the engineering of future algal cultivation systems.

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    Apollo
    Article . 2024
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35 Research products
  • Authors: Humpula, James F.; Dale, Bruce E.; Balan, Venkatesh; Sousa, Leonardo; +1 Authors

    Development of environmentally sustainable and economically viable technologies for plant cell wall deconstruction to fermentable sugars has been impeded due to native plant cell wall recalcitrance to thermochemical and biological based processing. Lower severity alkaline-based pretreatment processes like Ammonia Fiber Expansion (AFEX™) can overcome several limitations of traditional pretreatment approaches (e.g., acidic pretreatments) to producing cellulosic biofuels and biochemicals. Here, we give an overview of chemical reactions taking place during alkaline pretreatments including reactions between ammonia and polysaccharides/lignin (e.g., ammonolysis, hydrolysis and Maillard-type reactions). AFEX™ based pretreatments enhance enzymatic digestibility and fermentability of lignocellulosic biomass through various chemical and ultra-structural modifications within the cell wall. An improved mechanistic understanding of the AFEX™ process has led to the development of novel alkaline pretreatments that are briefly discussed in this review.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Tung, H.Y. Lim; Limtung, Pierre;

    SARS-COV-2, the etiologic agent of COVID-19 is able to infect cells through its Spike protein (SPp) which must first bind to its receptor ACE2. Most currently developed vaccines target the SARS-COV-2 encoded Spike protein. Many SARS-COV-2 variants have been identified that exhibit several mutations in their Spike protein. SARS-COV-2 variant, B.1.526 was identified in New York, U.S.A. [Annavajhala, M.K. (2021) medRxiv, DOI: 10.1101/2020.02.23.21) and shown to contain the mutations, L5F, T95I, D253G, E484K, S477N, D614G and A701V. T95 and S477 of SPp are phosphorylation sites for a number of Protein kinases, including Cdk1 and GSK-3. Here, through Computerized Structure Model Analysis and Thermodynamic Calculations, it is shown that phosphorylations of T95 and S477 increases the stabilities of SARS-COV-2 encoded SPp-ACE2 and SPp-DC-SIGN complexes with very marginal effects on the binding efficiencies between the components of the complexes, and mutations T95I and S477N antagonize the effects of the phosphorylations of T95 and S477. Thus, it appears that SARS-COV-2 variant, B.1.526 has adapted to exploit the protein phosphorylation apparatus of its host cells to its advantage, and the effects of phosphorylation of of T95 and S477 are blunted through random mutation. Whether Neutralizing Antibodies that target SPp can recognize the phosphorylated forms of SPp is currently unknown.

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    ZENODO
    Article . 2021
    License: CC BY
    Data sources: Datacite
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    ZENODO
    Article . 2021
    License: CC BY
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    ZENODO
    Article . 2021
    License: CC BY
    Data sources: Datacite
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      ZENODO
      Article . 2021
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      ZENODO
      Article . 2021
      License: CC BY
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      ZENODO
      Article . 2021
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Cánovas Díaz, Enrique; Martí Vega, Antonio; Fuertes Marrón, David; Antolín Fernández, Elisa; +4 Authors

    In this paper we present an optical characterization for quantum dot intermediate band solar cells (QDIBSCs). The cells were developed by growing a stack of ten InAs/GaAs QDs layers between p and n doped GaAs conventional emitters. Electroluminescence, EL, photoreflectance, PR, and transmission electron microscopy, TEM, were applied to the samples in order to test and characterize them optically. The results, derived from the application of the different techniques, showed a good correlation. TEM images revealed a very good structural quality of the QDs, which seem to evolve in shape-strain from the bottom to the top of the stack. Corresponding to the quality observed by TEM, strong signals from EL and PR resolved unambiguously the energy band diagram of the QDIBSCs. By fitting PR data we were able to indentify the coexistence of bands and discrete energy levels coming from the IB material. The PR data evidenced also a strong electric field over the dots, attributed to the space charge region created between the p-n emitters sandwiching the IB material. From EL results, we identified the predominantly radiative nature of the IB material related energy transitions. 23rd European Photovoltaic Solar Energy Conference and Exhibition, 1-5 September 2008, Valencia, Spain; 298-301

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    Recolector de Ciencia Abierta, RECOLECTA
    Conference object . 2009 . Peer-reviewed
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    Archivo Digital UPM
    Conference object . 2009
    License: CC BY NC ND
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      Recolector de Ciencia Abierta, RECOLECTA
      Conference object . 2009 . Peer-reviewed
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      Archivo Digital UPM
      Conference object . 2009
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    Authors: Cairns, John Jr.;

    In 1971, Garrett Hardin published an editorial entitled _Nobody Ever Dies of Overpopulation based on the cyclone that struck East Bengal and killed an estimated 500,000 people. Overcrowding forced people to live in a dangerous place like the Gangetic Delta which is barely above sea level. Now, 37 years later, a similar situation is unfolding in the Ganges River Delta in Bangladesh. This delta is also barely above sea level, and the water keeps rising due to global warming. If a large storm were to create hurricanes in this area housing and agricultural areas would be destroyed as well as power lines and water supply which would interfere with food deliveries and medical assistance. In a worst case scenario environmental refugees could reach 25 million and the death toll could be in the millions. If global climate change was one of the antecedent causes to this worst case scenario, would seal level rise and sever weather truly be the cause of deaths?

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    VTechWorks
    Article . 2008
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      VTechWorks
      Article . 2008
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    The current paradigm of global economics with exponential and continuous economic growth is unsustainable as far as Earth system ecology is concerned. To support the Earth system and boost sustainable development, a functional and operational linkage between global ecology and economics should be established – which we term ‘carbonomics’. The simple basis of ‘carbonomics’ is that the more fossil and non-fossil carbon one has as stocks, and not flows, of carbon, the richer one is. This opinion piece makes some suggestions about how we might establish such a balanced relationship. Consilience, No 17 (2017): Issue Seventeen: 2017

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    https://dx.doi.org/10.7916/d8r...
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      https://dx.doi.org/10.7916/d8r...
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    Authors: Chirisa, Innocent; Muzendab, Archimedes;

    This paper explores the feasibility of adopting ecological based planning in low-income residential development. It explicates that in developing countries efforts by housing authorities have been on housing provision irrespective of the environmental threats to sustainability. As these houses are built, future of urban ecology is under threat. The questions regarding this phenomenon are several: how do low-income populations perceive environmental issues of urban settlements? How capable and willing are the local authorities to embrace and apply ecological based planning in residential development? What are the facilitating instruments of ecological-based planning? What are the prospects of integrating ecological based planning to low-income residential development? What are the restraining factors towards embracement of ecological based planning and how best can they be harnessed towards future ecological cities? The case study of Hatcliffe residential area in Harare shows that there are many challenges to overcome uncoordinated planning approaches, ineffective policies and legislative frameworks, weak institutional settings, financial constraints, outdated planning standards and regulations, poverty, lack of environmental stewardship and lack of political will among others. The study findings call for robust environmental conservation strategies, strong environmental stewardship, responsive institutional and funding mechanism backed by realistic legislative frameworks and robust policy rectification. Tema. Journal of Land Use, Mobility and Environment, Vol 7, N° 1 (2014): Smart Cities Challenges: Smart Environment for Sustainable Resource Management

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    Authors: Cairns, John Jr.;

    The United States, which has been the poster child for car culture, has been warned of the unparalleled prospect of trillion-dollar deficits for years to come. Most state governments face severe reduction in tax monies, which will mean fewer funds for road and bridge repair, as well as reductions in other services. Personal debt is very high and home values have declined sharply, reducing the _nest egg of many families for retirement. In addition, the stock market decline has had deleterious effects on retirement funds. The car culture was built on cheap fuel, financing of car purchases, and a convenient national system of mostly free roads connecting nearly all parts of the United States. Personal transportation with cars has been the norm. Petroleum prices are down dramatically at the end of 2008, but people are driving less to pay off personal debt or because they have lost their jobs. Electric cars seemed promising until problems with coal-generated electricity became more generally known. In short, the car culture has passed a tipping point and alternative public transportation is not adequate for probable future needs. One characteristic of passing a tipping point is that return to the pre-tipping point conditions is very unlikely.

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    VTechWorks
    Article . 2009
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    Authors: Gaglione, Andrea; Rodenas-Herraiz, David; Jia, Yu; Nawaz, Sarfraz; +3 Authors

    Structural monitoring applications such as corrosion assessment, measurement of concrete temperature or moisture content of critical bridge structures can greatly benefit from the use of wireless sensor networks (WSNs), however energy harvesting for the operation of the network remains a challenge in this setting. We present a multihop vibration-based energy harvesting WSN system for bridge monitoring applications. Our preliminary simulation experiments show that the system is able to maintain energy neutral operation over time, preserving energy with careful management of sleep and communication times.

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    Authors: Luca Palmeri; Tommaso Musner; Alberto Barausse; Alberto Zangaglia; +3 Authors

    The loss of coastal habitats is a widespread problem in Europe. To protect the intertidal salt marshes of the lagoon of Venice from the erosion due to natural and human causes which is diffusely and intensely impacting them, the European Commission has funded the demonstrative project LIFE VIMINE. LIFE VIMINE aims to protect the most interior, hard-to-access salt marshes in the northern lagoon of Venice through an integrated approach, whose core is the prevention of erosion through numerous, small but spatially-diffuse soil-bioengineering protections works, mainly placed through semi-manual labour and with low impact on the environment and the landscape. The effectiveness of protection works in the long term is ensured through routine, temporally-continuous and spatially-diffuse actions of monitoring and maintenance. This method contrasts the common approach to managing hydraulic risk and erosion in Italy which is based on large, one-off and irreversible protection actions. The sustainability of the LIFE VIMINE approach is ensured by the participatory involvement of stakeholders and the recognition that protecting salt marshes means defending the benefits they provide to society through their ecological functions, as well as protecting the jobs linked to the existence or conservation of this habitat. EQA - International Journal of Environmental Quality, Vol 18 (2015)

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    EQA
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    Article . 2015
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    Authors: Greenan-Smith, Alyssa; Chua, Sing Teng; Vignolini, Silvia;

    Rapid progress in algal biotechnology has triggered a growing interest in hydrogel-encapsulated microalgal cultivation, especially for the engineering of functional photosynthetic materials and biomass production. An overlooked characteristic of gel-encapsulated cultures is the emergence of cell aggregates, which are the result of the mechanical confinement of the cells. Such aggregates have a dramatic effect on the light management of gel-encapsulated photobioreactors and hence strongly affect the photosynthetic outcome. To evaluate such an effect, we experimentally studied the optical response of hydrogels containing algal aggregates and developed optical simulations to study the resultant light intensity profiles. The simulations are validated experimentally via transmittance measurements using an integrating sphere and aggregate volume analysis with confocal microscopy. Specifically, the heterogeneous distribution of cell aggregates in a hydrogel matrix can increase light penetration while alleviating photoinhibition more effectively than in a flat biofilm. Finally, we demonstrate that light harvesting efficiency can be further enhanced with the introduction of scattering particles within the hydrogel matrix, leading to a four-fold increase in biomass growth. Our study, therefore, highlights a new strategy for the design of spatially efficient photosynthetic living materials that have important implications for the engineering of future algal cultivation systems.

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    Apollo
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