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CASCADE is a global dataset for 139 extant coccolithophore taxonomic units. CASCADE includes a trait database (size and cellular organic and inorganic carbon contents) and taxonomic-specific global spatiotemporal distributions (Lat/Lon/Depth/Month/Year) of coccolithophore abundance and organic and inorganic carbon stocks. CASCADE covers all ocean basins over the upper 275 meters, spans the years 1964-2019 and includes 33,119 taxonomic-specific abundance observations. Within CASCADE, we characterise the underlying uncertainties due to measurement errors by propagating error estimates between the different studies. Full details of the data set are provided in the associated Scientific Data manuscript. The repository contains five main folders: 1) "Classification", which contains YAML files with synonyms, family-level classifications, and life cycle phase associations and definitions; 2) "Concatenated literature", which contains the merged datasets of size, PIC and POC and which were corrected for taxonomic unit synonyms; 3) "Resampled cellular datasets", which contains the resampled datasets of size, PIC and POC in long format as well as a summary table; 4) "Gridded data sets", which contains gridded datasets of abundance, PIC and POC; 5) "Species lists", which contains spreadsheets of the "common" (>20 obs) and "rare" (<20 obs) species and their number of observations. The CASCADE data set can be easily reproduced using the scripts and data provided in the associated github repository: https://github.com/nanophyto/CASCADE/ (zenodo.12797197) Correspondence to: Joost de Vries, joost.devries@bristol.ac.uk v.0.1.2 has some fixes: 1. The wrongly specified S. neapolitana was removed from synonyms.yml (this species is now S. nana)2. Longitudes were corrected for Guerreiro et al., 20233. A double entry for Dimizia et al., 2015 was fixed4. Units in Sal et al., 2013 were correct to cells/L (previously cells/ml)5. Data from Sal et al., 2013 was re-done, as some species were missing6. Duplicate entries from Baumann et al., 2000 were dropped

This repository contains a series of .csv files developed for the study titled "Plant canopies promote climatic disequilibrium in Mediterranean recruit communities", authored by: Perez-Navarro MA, Lloret F, Molina-Venegas R, Alcántara JM and Verdú M. The author of these files is Perez-Navarro MA. These files are used to characterize species niches, estimate climatic disequilibrium for recruit communities growing under plant canopies and open spaces, and conduct statistical analyses. Variables description of each table is compiled in the METADATA.txt file. Please visit Github readme () to correctly place these files in the folder tree and check for the corresponding scripts where they are required. Please notice that although alternative approaches were calibrated to estimate species niche (accordingly producing multiple niche, distances and disequilibrium dataframes), only niche centroid calibrated discarding 95 percentile of lowest niche density was used for paper results and figures. Also, in case of univariate analyses only bio01, bio06 and bio12 were used in analyses, though species niche and further niche and community estimations were obtained for all 19 variables. This is version 2 (v2) and include extra intermediate .csv required to run all the R scripts included in the abovementioned Github repository. NAs or empty cells present in the .csv files of this repository means no data and do not contribute to the analyses. Visit METADATA.txt file for variables description. These data are under CC0 license. It is possible to share, copy and redistribute the material in any medium or format, and adapt, remix, transform, and build upon the material for any purpose. Studies using R scripts or any data files from these study should cite the abovementioned paper (Perez-Navarro MA, Lloret F, Molina-Venegas R, Alcantara JM, Verdu M. (2024). Plant canopies promote climatic disequilibrium in Mediterranean recruit communities). Please contact m.angeles582@gmail.com in case of having doubts or problems with the existing files and scripts. Current rates of climate change are exceeding the capacity of many plant species to track climate, thus leading communities to be in disequilibrium with climatic conditions. Plant canopies can contribute to this disequilibrium by buffering macro-climatic conditions and sheltering poorly adapted species to the oncoming climate, particularly in their recruitment stages. Here we analyze differences in climatic disequilibrium between understory and open ground woody plant recruits in 28 localities, covering more than 100,000 m2, across an elevation range embedding temperature and aridity gradients in the southern Iberian Peninsula. This study demonstrates higher climatic disequilibrium under canopies compared with open ground, supporting that plant canopies would affect future community climatic lags by allowing the recruitment of less arid-adapted species in warm and dry conditions, but also it endorse that canopies could favor warm-adapted species in extremely cold environments as mountain tops, thus pre-adapting communities living in these habitats to climate change.

This dataset contains the underlying data for the following publication: Doukas, H., Spiliotis, E., Jafari, M. A., Giarola, S. & Nikas, A. (2021). Low-cost emissions cuts in container shipping: Thinking inside the box. Transportation Research Part D: Transport and Environment, 94, 102815, https://doi.org/10.1016/j.trd.2021.102815.

This file collection contains the estimated spatial distribution of the above-ground biomass density (AGB) by the end of the 21st century across the Brazilian Atlantic Forest domain and the respective uncertanty. To develop the models, we used the maximum entropy method with projected climate data to 2100, based on the Intergovernmental Panel on Climate Change (IPCC) Representative Concentration Pathway (RCP) 4.5 from the fifth Assessment Report (AR5). The dataset is composed of four files in GeoTIFF format: calibrated-AGB-distribution.tif: raster file representing the present spatial distribution of the above-ground biomass density in the Atlantic Forest from the calibrated model. Unit: Mg/ha estimated-uncertanty-for-calibrated-agb-distribution.tif: raster file representing the estimated spatial uncertanty distribution of the calibrated above-ground biomass density. Unit: percentage. projected-AGB-distribution-under-rcp45.tif: raster file representing the projected spatial distribution of the above-ground biomass density in the Atlantic Forest by the end of 2100 under RCP 4.5 scenario. Unit: Mg/ha estimated-uncertanty-for-projected-agb-distribution.tif: raster file representing the estimated spatial uncertanty distribution of the projected above-ground biomass density. Unit: percentage. Spatial resolution: 0.0083 degree (ca. 1 km) Coordinate reference system: Geographic Coordinate System - Datum WGS84

Input files for the ForClim model (version 4.0.1) used in the associated paper. They can be used to to reproduce results of the simulation study. The ForClim model, including the source code, executable and documentation, is freely available under an Open Access license from the website of the original developers at https://ites-fe.ethz.ch/openaccess/. The original climatic dataset used to generate the ForClim input climate files at each site in South Tyrol is freely available at https://doi.pangaea.de/10.1594/PANGAEA.924502 while the CHELSA climate data for future scenarios are available at https://www.chelsa-climate.org. If interested in using this dataset for a research study or a project, please contact Marco Mina ----------------------------------------------------------------------- Hillebrand L, Marzini S, Crespi A, Hiltner U & Mina M (2023) Contrasting impacts of climate change on protection forests of the Italian Alps. Frontiers in Forests and Global Change, 6, 2023 https://doi.org/10.3389/ffgc.2023.1240235 ABSTRACT. Protection forests play a key role in protecting settlements, people, and infrastructures from gravitational hazards such as rockfalls and avalanches in mountain areas. Rapid climate change is challenging the role of protection forests by altering their dynamics, structure, and composition. Information on local- and regional-scale impacts of climate change on protection forests is critical for planning adaptations in forest management. We used a model of forest dynamics (ForClim) to assess the succession of mountain forests in the Eastern Alps and their protective effects under future climate change scenarios. We investigated eleven representative forest sites along an elevational gradient across multiple locations within an administrative region, covering wide differences in tree species structure, composition, altitude, and exposition. We evaluated protective performance against rockfall and avalanches using numerical indices (i.e., linker functions) quantifying the degree of protection from metrics of simulated forest structure and composition. Our findings reveal that climate warming has a contrasting impact on protective effects in mountain forests of the Eastern Alps. Climate change is likely to not affect negatively all protection forest stands but its impact depends on site and stand conditions. Impacts were highly contingent to the magnitude of climate warming, with increasing criticality under the most severe climate projections. Forests in lower-montane elevations and those located in dry continental valleys showed drastic changes in forest structure and composition due to drought-induced mortality while subalpine forests mostly profited from rising temperatures and a longer vegetation period. Overall, avalanche protection will likely be negatively affected by climate change, while the ability of forests to maintain rockfall protection depends on the severity of expected climate change and their vulnerability due to elevation and topography, with most subalpine forests less prone to loosing protective effects. Proactive measures in management should be taken in the near future to avoid losses of protective effects in the case of severe climate change in the Alps. Given the heterogeneous impact of climate warming, such adaptations can be aided by model-based projections and high local resolution studies to identify forest stand types that might require management priority for maintaining protective effects in the future.

Here, we investigate how stochasticity and age-dependence in energy dynamics influence maternal allocation in iteroparous females. We develop a state-dependent model to calculate the optimal maternal allocation strategy with respect to maternal age and energy reserves, focusing on allocation in a single offspring at a time. We introduce stochasticity in energetic costs– in terms of the amount of energy required to forage successfully and individual differences in metabolism – and in feeding success. We systematically assess how allocation is influenced by age-dependence in energetic costs, feeding success, energy intake per successful feeding attempt, and environmentally-driven mortality. First, using stochastic dynamic programming, we calculate the optimal amount of reserves M that mothers allocate to each offspring depending on their own reserves R and age A. The optimal life history strategy is then the set of allocation decisions M(R, A) over the whole lifespan which maximizes the total reproductive success of distant descendants. Second, we simulated the life histories of 1000 mothers following the optimisation strategy and the reserves at the start of adulthood R1, the distribution of which was determined, the distribution of which was determined using an iterative procedure as described . For each individual, we calculated maternal allocation Mt, maternal reserves Rt, and relative allocation Mt⁄Rt at each time period t. The relative allocation helps us to understand how resources are partitioned between mother and offspring. Third, we consider how the optimal strategy varies when there is age-dependence in resource acquisition, energetic costs and survival. Specifically, we include varying scenarios with an age-dependent increase or a decrease with age in energetic costs (c_t), feeding success (q_t), energy intake per successful feeding attempt (y_t), and environmentally-driven extrinsic mortality rate (d_t) (Table 2). We consider the age-dependence of parameters one at a time or in pairs, altering the slope, intercept, or asymptote of the age-dependence (linear or asymptotic function). Our aim is to identify whether the observed reproductive senescence can arise from optimal maternal allocation. As such, we do not impose a decline in selection in later life as all offspring are equally valuable at all ages (for a given maternal allocation), and there are no mutations. For each scenario, we run the backward iteration process with these age-dependent functions, obtain the allocation strategy, and simulate the life history of 1000 individuals based on the novel strategy. We then fit quadratic and linear models to the reproduction of these 1000 individuals using the lme function, nlme package in R. For these models, the response variable is the maternal allocation Mt and explanatory variables are the time period t and t2 (for the quadratic fit only), with individual identity as a random term. We use likelihood ratio tests to compare linear and quadratic models using the anova function (package nlme) with the maximum-likelihood method. If the comparison is significant (p-value <0.05), we considered the quadratic model to have a better fit, otherwise the linear model is considered more parsimonious. We were particularly interested in identifying scenarios where the fit was quadratic with a negative quadratic term. For each scenario, the pseudo R2 conditional value (proportion of variance explained by the fixed and random terms, accounting for individual identity) is calculated to assess the goodness-of-fit of the lme model, on a scale from 0 to 1, using the “r.squared” function, package gabtool. All calculations and coding are done in R. Iteroparous parents face a trade-off between allocating current resources to reproduction versus maximizing survival to produce further offspring. Optimal allocation varies across age, and follows a hump-shaped pattern across diverse taxa, including mammals, birds and invertebrates. This non-linear allocation pattern lacks a general theoretical explanation, potentially because most studies focus on offspring number rather than quality and do not incorporate uncertainty or age-dependence in energy intake or costs. Here, we develop a life history model of maternal allocation in iteroparous animals. We identify the optimal allocation strategy in response to stochasticity when energetic costs, feeding success, energy intake, and environmentally-driven mortality risk are age-dependent. As a case study, we use tsetse, a viviparous insect that produces one offspring per reproductive attempt and relies on an uncertain food supply of vertebrate blood. Diverse scenarios generate a hump-shaped allocation: when energetic costs and energy intake increase with age; and also when energy intake decreases, and energetic costs increase or decrease. Feeding success and mortality risk have little influence on age-dependence in allocation. We conclude that ubiquitous evidence for age-dependence in these influential traits can explain the prevalence of non-linear maternal allocation across diverse taxonomic groups.

The version 1.0 contains the supporting data for the work (still under submission) "Last century changes in annual precipitation in a Mediterranean area and their spatial variability. Insights from northern Tuscany (Italy)". The following files are here available (all file are georeferenced in EPSG: 3003): - AVG_Rainfall_1990-2019.tif -> Raster map of the mean annual precipitation for the northern Tuscany, Italy. It encompasses the portion of the Tuscany region northern of the cities of Livorno - Florence. The interpolation was validated via a leave one out cross-validation procedure. - D3-1_Area2_ApuanAlps.tif -> Raster map of the differences in mean annual precipitation between the two 3-decades periods 1921 to 1950 and 1990 to 2019 for the Apuan Alps mountain ridge (Tuscany, Italy). - D3-2_Area2_ApuanAlps.tif -> Raster map of the differences in mean annual precipitation between the two 3-decades periods 1951 to 1980 and 1990 to 2019 for the Apuan Alps mountain ridge (Tuscany, Italy). - DeltaSHP_Points_AVG_Annual_Rainfall.zip -> Shape file of the raingauges locations with the mean annual precipitation values of the period 1990 to 2019. - RaingaugesSHP_Points_AVG_Annual_Rainfall_1990-2019.zip -> Shape file of the raingauges locations with the following information: differences in the mean annual precipitation values between the two 3-decades periods 1951 to 1980 and 1990 to 2019 (named D3-2); p values of the t-test for significance of the differences between the mean annual precipitation ofthe two 3-decades periods 1951 to 1980 and 1990 to 2019; difference in the mean annual precipitation values between the two 3-decades periods 1921 to 1950 and 1990 to 2019 (named D3-1); p values of the t-test for significance of the differences between the mean annual precipitation ofthe two 3-decades periods 1921 to 1950 and 1990 to 2019.