This is a comprehensive dataset of the agriculture and food system scenarios co-developed with stakeholders with the agricultural land use model BioBaM-GHG 2.0 and presented in Deliverable 4.2 of the H2020 project UNISECO. It includes sub-national (NUTS1/2-level) data on agricultural production and consumption, land use, greenhouse gas emissions from livestock and agricultural activities, etc. for the base year 2012 and the scenario years 2030 and 2050. The scenarios include a Business as usual case and four scenarios with focus on organic and agro-ecological farming practices in the EU, based on different storylines. Further information is available from the above-mentioned deliverable. A detailed model description is provided in the paper "Exploring the option space for land system futures at regional to global scales: The diagnostic agro-food, land use and greenhouse gas emission model BioBaM-GHG 2.0", in which these scenarios are also presented as an exemplary application of the model BioBaM-GHG 2.0. This work was funded by the ERA-NET SusAn project 101243 AnimalFuture, as well as by the European Union’s Horizon 2020 research and innovation programme and its funding of the H2020 UNISECO project under grant agreement N°773901.