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This file contains the AiNU data used for the article entitled by Physics-based material parameters extraction from perovskite experiments via Bayesian optimization (https://arxiv.org/abs/2402.11101).

As part of global efforts to reduce dependence on carbon-based energy sources there has been a rapid increase in the installation of renewable energy devices. The installation and operation of these devices can result in conflicts with wildlife. In the marine environment, mammals may avoid wind farms that are under construction or operating. Such avoidance may lead to more time spent travelling or displacement from key habitats. A paucity of data on at-sea movements of marine mammals around wind farms limits our understanding of the nature of their potential impacts. Here, we present the results of a telemetry study on harbour seals Phoca vitulina in The Wash, south-east England, an area where wind farms are being constructed using impact pile driving. We investigated whether seals avoid wind farms during operation, construction in its entirety, or during piling activity. The study was carried out using historical telemetry data collected prior to any wind farm development and telemetry data collected in 2012 during the construction of one wind farm and the operation of another. Within an operational wind farm, there was a close-to-significant increase in seal usage compared to prior to wind farm development. However, the wind farm was at the edge of a large area of increased usage, so the presence of the wind farm was unlikely to be the cause. There was no significant displacement during construction as a whole. However, during piling, seal usage (abundance) was significantly reduced up to 25 km from the piling activity; within 25 km of the centre of the wind farm, there was a 19 to 83% (95% confidence intervals) decrease in usage compared to during breaks in piling, equating to a mean estimated displacement of 440 individuals. This amounts to significant displacement starting from predicted received levels of between 166 and 178 dB re 1 μPa(p-p). Displacement was limited to piling activity; within 2 h of cessation of pile driving, seals were distributed as per the non-piling scenario. Synthesis and applications. Our spatial and temporal quantification of avoidance of wind farms by harbour seals is critical to reduce uncertainty and increase robustness in environmental impact assessments of future developments. Specifically, the results will allow policymakers to produce industry guidance on the likelihood of displacement of seals in response to pile driving; the relationship between sound levels and avoidance rates; and the duration of any avoidance, thus allowing far more accurate environmental assessments to be carried out during the consenting process. Further, our results can be used to inform mitigation strategies in terms of both the sound levels likely to cause displacement and what temporal patterns of piling would minimize the magnitude of the energetic impacts of displacement. Wash_diagWash_diag.xlsx is the historic location data (pre windfarm construction) for the 19 individuals used in the analysis described in Russell et al.

Here, we investigate how stochasticity and age-dependence in energy dynamics influence maternal allocation in iteroparous females. We develop a state-dependent model to calculate the optimal maternal allocation strategy with respect to maternal age and energy reserves, focusing on allocation in a single offspring at a time. We introduce stochasticity in energetic costs– in terms of the amount of energy required to forage successfully and individual differences in metabolism – and in feeding success. We systematically assess how allocation is influenced by age-dependence in energetic costs, feeding success, energy intake per successful feeding attempt, and environmentally-driven mortality. First, using stochastic dynamic programming, we calculate the optimal amount of reserves M that mothers allocate to each offspring depending on their own reserves R and age A. The optimal life history strategy is then the set of allocation decisions M(R, A) over the whole lifespan which maximizes the total reproductive success of distant descendants. Second, we simulated the life histories of 1000 mothers following the optimisation strategy and the reserves at the start of adulthood R1, the distribution of which was determined, the distribution of which was determined using an iterative procedure as described . For each individual, we calculated maternal allocation Mt, maternal reserves Rt, and relative allocation Mt⁄Rt at each time period t. The relative allocation helps us to understand how resources are partitioned between mother and offspring. Third, we consider how the optimal strategy varies when there is age-dependence in resource acquisition, energetic costs and survival. Specifically, we include varying scenarios with an age-dependent increase or a decrease with age in energetic costs (c_t), feeding success (q_t), energy intake per successful feeding attempt (y_t), and environmentally-driven extrinsic mortality rate (d_t) (Table 2). We consider the age-dependence of parameters one at a time or in pairs, altering the slope, intercept, or asymptote of the age-dependence (linear or asymptotic function). Our aim is to identify whether the observed reproductive senescence can arise from optimal maternal allocation. As such, we do not impose a decline in selection in later life as all offspring are equally valuable at all ages (for a given maternal allocation), and there are no mutations. For each scenario, we run the backward iteration process with these age-dependent functions, obtain the allocation strategy, and simulate the life history of 1000 individuals based on the novel strategy. We then fit quadratic and linear models to the reproduction of these 1000 individuals using the lme function, nlme package in R. For these models, the response variable is the maternal allocation Mt and explanatory variables are the time period t and t2 (for the quadratic fit only), with individual identity as a random term. We use likelihood ratio tests to compare linear and quadratic models using the anova function (package nlme) with the maximum-likelihood method. If the comparison is significant (p-value <0.05), we considered the quadratic model to have a better fit, otherwise the linear model is considered more parsimonious. We were particularly interested in identifying scenarios where the fit was quadratic with a negative quadratic term. For each scenario, the pseudo R2 conditional value (proportion of variance explained by the fixed and random terms, accounting for individual identity) is calculated to assess the goodness-of-fit of the lme model, on a scale from 0 to 1, using the “r.squared” function, package gabtool. All calculations and coding are done in R. Iteroparous parents face a trade-off between allocating current resources to reproduction versus maximizing survival to produce further offspring. Optimal allocation varies across age, and follows a hump-shaped pattern across diverse taxa, including mammals, birds and invertebrates. This non-linear allocation pattern lacks a general theoretical explanation, potentially because most studies focus on offspring number rather than quality and do not incorporate uncertainty or age-dependence in energy intake or costs. Here, we develop a life history model of maternal allocation in iteroparous animals. We identify the optimal allocation strategy in response to stochasticity when energetic costs, feeding success, energy intake, and environmentally-driven mortality risk are age-dependent. As a case study, we use tsetse, a viviparous insect that produces one offspring per reproductive attempt and relies on an uncertain food supply of vertebrate blood. Diverse scenarios generate a hump-shaped allocation: when energetic costs and energy intake increase with age; and also when energy intake decreases, and energetic costs increase or decrease. Feeding success and mortality risk have little influence on age-dependence in allocation. We conclude that ubiquitous evidence for age-dependence in these influential traits can explain the prevalence of non-linear maternal allocation across diverse taxonomic groups.

Herbivory assessments were made at the plant community and species levels. We focused on three plant species with a widespread occurrence across the temperature gradient: cuckooflower (Cardamine pratensis, Linnaeus), common mouse-ear (Cerastium fontanum, Baumgerten), and marsh violet (Viola palustris, Linnaeus). For assessments of invertebrate herbivory at the species level, thirty individuals per species of C. pratensis, C. fontanum, and V. palustris were marked in each of ten plots, using a stratified random sampling method where individuals were randomly selected, but the full range of within-plot soil temperatures was represented. For assessments of invertebrate herbivory at the community level, five 50 × 50 cm quadrats were marked at random points in eight of the plots that best captured the full temperature gradient. The community-level herbivory assessment was conducted on 19th June. The number of damaged plants was recorded out of 100 random individuals, selected using a 10 × 10 grid within each 50 × 50 cm quadrat. For the species-level herbivory assessment, individual marked plants were surveyed for signs of invertebrate herbivory every two weeks from 30th May to 2nd July, generating three time-points per species. At each survey, all marked individuals for each species were assessed within a 48-hour period. Plants were recorded as damaged or not damaged by invertebrate herbivores at each time-point. Further details of how phenological stage of development, vegetation community composition, soil temperature, moisture, pH, nitrate, ammonium, and phosphate were recorded are provided in the supporting documentation. This is a dataset of environmental data, vegetation cover, and community- and species-level invertebrate herbivory, sampled at 14 experimental soil plots in the Hengill geothermal valley, Iceland, from May to July 2017. The plots span a temperature gradient of 5-35 °C on average over the sampling period, yet they occur within 1 km of each other and have similar soil moisture, pH, nitrate, ammonium, and phosphate.

#### Note: #### An updated version of these data including data on biofuels and fuels from waste is available [here](https://pub.uni-bielefeld.de/record/2950291). The extended version also offers a package of R-scripts that have been used to reproduce the statistical analysis presented in [Hötte, Pichler, Lafond (2021): The rise of science in low-carbon energy technologies](https://doi.org/10.1016/j.rser.2020.110654). This data publication offers data about low-carbon energy technology (LCET) patents and citations links to the scientific literature. This data publication contains different data sets (in .RData and (long-term archivable) .tsv format). Further information about each data set is provided in more detail below. - "all_papers.RData" : Data on scientific papers from Microsoft Academic Graph (MAG), 3 columns: Paper ID, Paper year, cited (binary 0-1, indicates whether the paper is cited by a patent). - "all_patents.RData" : Data on USPTO utility patents, 6 columns: Patent number, Patent year (grant year), CPC class, Patent date, Patent title, citing_to_science (binary 0-1, indicates whether the patent is citing to science). - "LCET_patents.RData" : Subset of LCET patents, 6 columns: Patent number, Patent year (grant year), Technology type, CPC class, Patent date, Patent title. - "LCET_patent_citations.RData" : Citations from LCET patents to other patents, 2 columns: citing, cited (Patent numbers). - "LCET_subset_with_metainfo_final.RData" : Citations from LCET patents to scientific papers from MAG, complemented by meta-information on patents and papers, 18 columns: Patent number, Paper ID, Patent year, Paper year, Technology type, WoS field, Patent title, Paper title, DOI, Confidence Score, Citation type, Reference type, Journal/ Conf. name, Journal ID, Conference ID, CPC class, Patent date, US patent. ### License and terms of use ### This data is licensed under the CC BY 4.0 license. See: [https://creativecommons.org/licenses/by/4.0/legalcode](https://creativecommons.org/licenses/by/4.0/legalcode) Please find the full license text below. If you want to use the data, do not forget to give appropriate credit by citing this data publication and the following paper. Kerstin Hötte, Anton Pichler, François Lafond: *The rise of science in low-carbon energy technologies*, Renewable and Sustainable Energy Reviews, Volume 139, 2021 [https://doi.org/10.1016/j.rser.2020.110654](https://doi.org/10.1016/j.rser.2020.110654) ### LCET definition and concepts ### LCET are defined by Cooperative Patent Classification (CPC) codes. CPC offers "tags" that are assigned to patents that are useful for the adaptation and mitigation of climate change. LCET are identified by YO2E codes, i.e. that are assigned to technologies that contribute to the "REDUCTION OF GREENHOUSE GAS [GHG] EMISSIONS, RELATED TO ENERGY GENERATION, TRANSMISSION OR DISTRIBUTION". Only the subset of Y02E01 ("Energy generation through renewable energy sources") and Y02E03 ("Energy generation of nuclear origin") technologies are used. 8 different LCET are distinguished: Solar PV, Wind, Solar thermal, Ocean power, Hydroelectric, Geothermal, Nuclear fission and Nuclear fusion. More information about the Y02-tags can be found in: Veefkind, Victor, et al. "A new EPO classification scheme for climate change mitigation technologies." World Patent Information 34.2 (2012): 106-111. DOI: [https://doi.org/10.1016/j.wpi.2011.12.004](https://doi.org/10.1016/j.wpi.2011.12.004) ### Data sources and compilation ### The data was generated by the merge of different data sets. 1.) Patent data from USPTO was downloaded here: https://bulkdata.uspto.gov/ 2.) Complementary data on grant year and patent title was taken from: https://cloud.google.com/blog/products/gcp/google-patents-public-datasets-connecting-public-paid-and-private-patent-data 3.) Citations to science come from the Reliance on Science (RoS) data set https://zenodo.org/record/3685972 (v23, Feb. 24, 2020) DOI: [10.5281/zenodo.3685972](10.5281/zenodo.3685972) The directory ("code") offers the R-scripts that were used to process MAG data and to link it to patent data. The header of the R-scripts offer additional technical information about the subsetting procedures and data retrieval. For more information about the patent data, see: Pichler, A., Lafond, F. & J, F. D. (2020), Technological interdependencies predict innovation dynamics, Working paper pp. 1–33. URL: [https://arxiv.org/abs/2003.00580](https://arxiv.org/abs/2003.00580) For more information about MAG data, see: Marx, Matt, and Aaron Fuegi. "Reliance on science: Worldwide front‐page patent citations to scientific articles." Strategic Management Journal 41.9 (2020): 1572-1594. DOI: [https://doi.org/10.1002/smj.3145](https://doi.org/10.1002/smj.3145) Marx, Matt and Fuegi, Aaron, Reliance on Science: Worldwide Front-Page Patent Citations to Scientific Articles. Boston University Questrom School of Business Research Paper No. 3331686. DOI: [http://dx.doi.org/10.2139/ssrn.3331686 ](http://dx.doi.org/10.2139/ssrn.3331686 ) ### Detailed information about the data ### - "all_papers.RData" : Data on scientific papers from Microsoft Academic Graph (MAG), 3 columns: Paper ID: Unique paper-identifier used by MAG Paper year: Year of publication cited: binary 0-1, indicates whether the paper is cited by a patent, citation links are made in the text body and front-page of the patent, and added by examiners and applicants. - "all_patents.RData" : Data on USPTO utility patents, 6 columns: Patent number: Number given by USPTO. Can be used for manual patent search in http://patft.uspto.gov/netahtml/PTO/srchnum.htm (numeric) Patent year: Year when the patent was granted (numeric) CPC class: Detailed 8-digit CPC code (numeric) Patent date: Exact date of patent granting (numeric) Patent title: Short title (character) citing_to_science: binary 0-1, indicates whether the patent is citing to science as identified by citation links in RoS. (numeric) - "LCET_patents.RData" : Subset of LCET patents, 6 columns: Patent number: (numeric) Patent year: (numeric) Technology type: Short code used to tag 8 different types of LCET (pv, (nuclear) fission, (solar) thermal, (nuclear) fusion, wind, geo(termal), sea (ocean power), hydro) (character) CPC class: Detailed 8-digit CPC code (character) Patent date: (numeric) Patent title: (numeric) - "LCET_patent_citations.RData" : Citations from LCET patents to other patents, 2 columns: citing: Number of citing patent (numeric) cited: Number of cited patent (numeric) - "LCET_subset_with_metainfo_final.RData" : Citations from LCET patents to scientific papers from MAG, complemented by meta-information on patents and papers, 18 columns: Patent number: see above (numeric) Paper ID: see above (numeric) Patent year: see above (numeric) Paper year: see above (numeric) Technology type: see above (character) WoS field: Web of Science field of research, WoS fiels were probabilistically assigned to papers and are used as given by RoS (character) Patent title: see above (character) Paper title: Title of scientific article (character) DOI: Paper DOI if available (character) Confidence Score: Reliability score of citation link (numeric). Links were probabilistically assiged. See Marx and Fuegi 2019 for further detail. Citation type: Indicates whether citation made in text body of patent document or its front page (character) Reference type: Examiner or applicant added citation link (or unknown). (character) Journal/ Conf. name: Name of journal or conference proceeding where the cited paper was published (character) Journal ID: Journal identifier in MAG (numeric) Conference ID: Conference identifier in MAG (numeric) CPC class: see above (character) Patent date: see above (numeric) US patent: binary US-patent indicator as provided by RoS (numeric) #### Note: #### The citation links were probabilistically retrieved. During the analysis, we identified manually some false-positives are removed them from the "LCET_subset_with_metainfo_final.RData" data set. The list is available, too: "list_of_false_positives.tsv" We do not claim to have a perfect coverage but expect a precision of >98% as described by Marx and Fuegi 2019. ### Statistics about the data ### Full data set: - Number of papers in MAG: 179,083,029 - Number of all patents: 10,160,667 - Number of citing patents: 2,058,233 - Number of cited papers: 4,404,088 - Number of citation links from patents to papers: 34,959,193 LCET subset: - Number of LCET patents: 57,530 - Number of citing LCET patents: 16,674 - Number of cited papers: 53,509 - Number of citation links from LCET patents to papers: 151,253 - Number of citation links from LCET patents to other patents: 567,274 Meta-information: Papers: - Publication year, 251 Web-of-Science (WoS) categories, Journal/ conference proceedings name, DOI, Paper title Patents: - Grant year, >250,000 hierarchical CPC classes, 8 LCET types Citation links: - Reference type, citation type, reliability score #### If you have further questions about the data or suggestions, please contact: kerstin.hotte@oxfordmartin.ox.ac.uk ### License issues ### Terms of use of the source data: - Reliance on Science data [https://zenodo.org/record/3685972](https://zenodo.org/record/3685972), Open Data Commons Attribution License (ODC-By) v1.0, https://opendatacommons.org/licenses/by/1.0/ - "Google Patents Public Data” by IFI CLAIMS Patent Services and Google (https://cloud.google.com/blog/products/gcp/google-patents-public-datasets-connecting-public-paid-and-private-patent-data), Creative Commons Attribution 4.0 International License (CC BY 4.0), https://console.cloud.google.com/marketplace/details/google_patents_public_datasets/google-patents-public-data - USPTO patent data (https://bulkdata.uspto.gov/), see: https://bulkdata.uspto.gov/data/2020TermsConditions.docx

Poleward range extensions by warm-adapted sea urchins are switching temperate marine ecosystems from kelp-dominated to barren-dominated systems that favour the establishment of range-extending tropical fishes. Yet, such tropicalization may be buffered by ocean acidification, which reduces urchin grazing performance and the urchin barrens that tropical range-extending fishes prefer. Using ecosystems experiencing natural warming and acidification, we show that ocean acidification could buffer warming-facilitated tropicalization by reducing urchin populations (by 87%) and inhibiting the formation of barrens. This buffering effect of CO2 enrichment was observed at natural CO2 vents that are associated with a shift from a barren-dominated to a turf-dominated state, which we found is less favourable to tropical fishes. Together, these observations suggest that ocean acidification may buffer the tropicalization effect of ocean warming against urchin barren formation via multiple processes (fewer urchins and barrens) and consequently slow the increasing rate of tropicalization of temperate fish communities. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-07-26.

# Data on: Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China [https://doi.org/10.5061/dryad.vdncjsz1z](https://doi.org/10.5061/dryad.vdncjsz1z) This dataset is the data used in the paper of Global change biology entitled "Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China". We use an integrated multi-model, multi-scenario framework to assess the impact of global climate change on SFTS disease in the mainland of China. ## Description of the data and file structure The predicted annual incidence of national SFTS cases with or without human population reduction under four RCPs under different climate change scenarios (RCP2.6, RCP4.5, RCP6.0, and RCP8.5) in the 2030s, 2050s, and 2080s. The value represents the annual incidence, and the unit is 105/year. The Dataset-1 file includes the predicted annual incidence of national SFTS cases with a fixed future human population under different climate change scenarios (RCP2.6, RCP4.5, RCP6.0, and RCP8.5) in the 2030s, 2050s, and 2080s. The Dataset-2 file includes the predicted annual incidence of national SFTS cases in the 2030s, 2050s, and 2080s with human population reduction (SSP2) under four RCPs. ## Sharing/Access information Data was derived from the following sources: * https://doi.org/10.1111/gcb.16969 This dataset is the data used in the paper of Global change biology entitled "Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China". We use an integrated multi-model, multi-scenario framework to assess the impact of global climate change on SFTS disease in the mainland of China. The SFTS incidence in three time periods (2030-2039, 2050-2059, 2080-2089) is predicted to be increased as compared to the 2010s in the context of various RCPs. The projected spatiotemporal dynamics of SFTS will be heterogeneous across provinces. Notably, we predict possible outbreaks in Xinjiang and Yunnan in the future, where only sporadic cases have been reported previously. These findings highlight the need for population awareness of SFTS in endemic regions, and enhanced monitoring in potential risk areas.  See the Materials and methods section in the original paper. The code used in the statistical analyses are present in the paper and/or the Supplementary Materials.

Variable list for files: SW wind - Section table on Skomer (Standardised).csv / NW wind - Section table on Skomer (Standardised).csv / SE wind - Section table on Skomer (Standardised).csv /NE wind - Section table on Skomer (Standardised).csv and SW wind - Sections on Skokholm (Standardised).csv FID: Row ID (for use in ArcGIs) Count: Number of guillemots per section Area: Total area of each section () Density: Density of guillemots per section (number of birds/ Area) X_Centre: X coordinate of the central point of each section Y_Centre: Y coordinate of the central point of each section Sector: Section ID MeanUMedian; MeanUIQR, MeanUSkewness, MeanUCV: Median, interquartile range,skewness and coefficient of variation of mean wind speed per section HorizontalMedian;HorizontalIQR,HorizontalSkewness,HorizontalCV: Median, interquartile range,skewness and coefficient of variation of horizontal wind speed per section PMedian;PIQR,PSkewness,PCV: Median, interquartile range,skewness and coefficient of variation of preessure per section TKEMedian;TKEIQR,TKESkewness,TKECV: Median, interquartile range,skewness and coefficient of variation of turbulent kinetic energy per section TIMedian;TIIQR,TISkewness,TICV: Median, interquartile range,skewness and coefficient of variation of turbulence intensity per section U_2Median;lU_2IQR;U_2Skewness;U_2CV: Median, interquartile range,skewness and coefficient of variation of vertical wind speed per section EpsilonMedian;EpsilonIQR,EpsilonSkewness,EpsilonCV: Median, interquartile range,skewness and coefficient of variation of turbulent dissipation rate per section NutMedian;NutIQR,NutSkewness,NutCV: Median, interquartile range,skewness and coefficient of variation of kinematic viscosity per section GustsMedian;GustsIQR,GustsSkewness,GustsCV: Median, interquartile range,skewness and coefficient of variation of instataneous gusts per section MeanSectorSlope: Mean slope per section ColPresence: Binomial variable, indicating whether a section has birds or not. This variable varies with classification, based on either the count of birds or the density per section Variable list for file: Section table on Skomer - with Mean cliff orientation and Slope (NOT-Standardised).csv FID: Row ID (for use in ArcGIs) Count: Number of guillemots per section Area: Total area of each section () Density: Density of guillemots per section (number of birds/ Area) X_Centre: X coordinate of the central point of each section Y_Centre: Y coordinate of the central point of each section Sector: Section ID MeanSectorSlope: Mean slope per section MeanSectorAspectCircular: Mean cliff orientation per section ApsectClass: Factor indicating whether the mean cliff orientation is lee- or windward to the SW wind ColPresence: Binomial variable, indicating whether a section has birds or not. This variable varies with classification, based on either the count of birds or the density per section Variable list for file: SW wind - Sections on Skokholm to predict colonies using cliff orientation and slope model from Skomer (NON - Standardised).csv FID: Row ID (for use in ArcGIs) Count: Number of guillemots per section Area: Total area of each section () Density: Density of guillemots per section (number of birds/ Area) Sector: Section ID MeanSectorSlope: Mean slope per section MeanSectorAspectCircular: Mean cliff orientation per section Wind is fundamentally related to shelter and flight performance: two factors that are critical for birds at their nest sites. Despite this, airflows have never been fully integrated into models of breeding habitat selection, even for well-studied seabirds. Here we use computational fluid dynamics to provide the first assessment of whether flow characteristics (including wind speed and turbulence) predict the distribution of seabird colonies, taking common guillemots (Uria aalge) breeding on Skomer island as our study system. This demonstrates that occupancy is driven by the need to shelter from both wind and rain/ wave action, rather than airflow characteristics alone. Models of airflows and cliff orientation both performed well in predicting high quality habitat in our study site, identifying 80% of colonies and 93% of avoided sites, as well as 73% of the largest colonies on a neighbouring island. This suggests generality in the mechanisms driving breeding distributions, and provides an approach for identifying habitat for seabird reintroductions considering current and projected wind speeds and directions. Methods detailed in manuscript: https://doi.org/10.1111/ecog.05733.

# Coral reef state influences resilience to acute climate-mediated disturbances\_Table S1 [https://doi.org/10.5061/dryad.rfj6q57gz](https://doi.org/10.5061/dryad.rfj6q57gz) The dataset provides a summary of all publications included in the analysis for this study and the key statistics obtained from the studies and used in the analyses. The dataset includes details about the publication, spatial identifiers (e.g. realm, province, ecoregion) unique site code, information on the disturbance type and timing, the pre-and post-disturbance coral cover, the 5-year annual recovery rate, the recovery shape and recovery completeness classifications. Please see details Methods in the journal article "Coral reef state influences resilience to acute climate-mediated disturbances" as published in Global Ecology and Biogeography. ## Description of the data and file structure Each column provides the following information: | Column | Detail | | ------ | ------ | | Realm | All studies were assigned to an ‘ecoregion’, ‘province’ and ‘realm’ based on their spatial location in Spalding et al. (2007)’s spatial classification system for coastal and shelf waters. | | Province | All studies were assigned to an ‘ecoregion’, ‘province’ and ‘realm’ based on their spatial location in Spalding et al. (2007)’s spatial classification system for coastal and shelf waters. | | Ecoregion | All studies were assigned to an ‘ecoregion’, ‘province’ and ‘realm’ based on their spatial location in Spalding et al. (2007)’s spatial classification system for coastal and shelf waters. | | Unique study identifier | Unique identifiers for the lowest sampling unit in the dataset. In cases where there were data for different regions, reefs, islands/atolls, sites, reef zones, depths, and/or multiple disturbances within a publication or time-series, data from these publications were divided into separate ‘studies’. | | Publication/Dataset | Unique identifiers for the publication or dataset (generally the surname of the first author followed by the year of publication). | | Publication title | Title of the publication or dataset from which the data were sourced. | | Publication year | Year the publication from the which the data were sourced was published. | | Country/Territory | Name of the country or location from which the data came. | | Site latitude | Latitude of the study site from where the data came. | | Site longitude | Longitude of the study site from where the data came. | | Disturbance type | Classification of disturbance: Temperature stress, Cyclone/ severe storm, Runoff or Multiple. | | Disturbance.year | Year of the disturbance. | | Mean coral cover pre-disturbance | Pre-disturbance coral cover as extracted from the publication or dataset as the closest data point prior to disturbance. If there is an NA value in this column then there was no pre-disturbance data available and a measure of impact was not calculated. | | Mean coral cover post-disturbance | Post-disturbance coral cover as extracted from the publication or dataset as the closest data point prior to disturbance. If there is an NA value in this column then there was no pre-disturbance data available and a measure of impact was not calculated. | | Impact (lnRR) | Impact measure: the log response ratio of pre- to post-disturbance percentage coral cover. If there is an NA value in this column then there was no pre-disturbance data available and a measure of impact was not calculated. | | Time-averaged recovery rate | Recovery rate as percentage coral cover per year in the approximate 5-year time window following disturbance. See main Methods text in manuscript for more detail. If there is an NA value in this column then the available time-series following disturbance did not satisfy the criteria for inclusion in the calculation of recovery rate. | | Recovery shape | Recovery shape category: linear, accelerating, decelerating, logistic, flatline or null. If there is an NA value in this column then the available time-series following disturbance did not satisfy the criteria for inclusion in classification of recovery shape. | | Recovery completeness | Recovery completeness category: complete recovery – coral is observed to reach its pre-disturbance coral cover, signs of recovery – a positive trajectory but not reaching pre-disturbance cover in the time period examined, undetermined – no clear pattern in recovery, the null model was the top model, no recovery – the null model was the top model but the linear model had slope and standard error in slope near zero and further decline – the top model had a negative trend. If there is an NA value in this column then the available time-series following disturbance did not satisfy the criteria for inclusion in classification of recovery shape. | | Reference | Source for the data. | ## Sharing/Access information Data was derived from the following sources: **Appendix 1. Full list of references providing the data used in impact and recovery analyses supporting Table S1** Arceo, H. O., Quibilan, M. C., Aliño, P. M., Lim, G., & Licuanan, W. Y. (2001). Coral bleaching in Philippine reefs: Coincident evidences with mesoscale thermal anomalies. Bulletin of Marine Science, 69(2), 579-593. Aronson, R. B., Precht, W. F., Toscano, M. A., & Koltes, K. H. (2002). The 1998 bleaching event and its aftermath on a coral reef in Belize. Marine Biology, 141(3), 435-447. Aronson, R. B., Sebens, K. P., & Ebersole, J. P. (1994). Hurricane Hugo's impact on Salt River submarine canyon, St. Croix, US Virgin Islands. 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Status of Caribbean coral reefs after bleaching and hurricanes in 2005. Wismer, S., Tebbett, S. B., Streit, R. P., & Bellwood, D. R. (2019). Spatial mismatch in fish and coral loss following 2016 mass coral bleaching. Science of the Total Environment, 650, 1487-1498. Woolsey, E., Bainbridge, S. J., Kingsford, M. J., & Byrne, M. (2012). Impacts of cyclone Hamish at One Tree Reef: Integrating environmental and benthic habitat data. Marine Biology, 159(4), 793-803. Aim: Understand the interplay between resistance and recovery on coral reefs, and investigate dependence on pre- and post-disturbance states, to inform generalisable reef resilience theory across large spatial and temporal scales. Location: Tropical coral reefs globally. Time period: 1966 to 2017. Major taxa studied: Scleratinian hard corals. Methods: We conducted a literature search to compile a global dataset of total coral cover before and after acute storms, temperature stress, and coastal runoff from flooding events. We used meta-regression to identify variables that explained significant variation in disturbance impact, including disturbance type, year, depth, and pre-disturbance coral cover. We further investigated the influence of these same variables, as well as post-disturbance coral cover and disturbance impact, on recovery rate. We examined the shape of recovery, assigning qualitatively distinct, ecologically relevant, population growth trajectories: linear, logistic, logarithmic (decelerating), and a second-order quadratic (accelerating). Results: We analysed 427 disturbance impacts and 117 recovery trajectories. Accelerating and logistic were the most common recovery shapes, underscoring non-linearities and recovery lags. A complex but meaningful relationship between the state of a reef pre- and post-disturbance, disturbance impact magnitude, and recovery rate was identified. Fastest recovery rates were predicted for intermediate to large disturbance impacts, but a decline in this rate was predicted when more than ~75% of pre-disturbance cover was lost. We identified a shifting baseline, with declines in both pre-and post-disturbance coral cover over the 50 year study period. Main conclusions: We breakdown the complexities of coral resilience, showing interplay between resistance and recovery, as well as dependence on both pre- and post-disturbance states, alongside documenting a chronic decline in these states. This has implications for predicting coral reef futures and implementing actions to enhance resilience. The dataset provides a summary of all studies included in the analysis and the key statistics obtained from the studies and used in the analyses for the manuscript entitled "Coral reef state influences resilience to acute climate-mediated disturbances" as published in Global Ecology and Biogeography. The dataset includes details about the publication, spatial identifiers (e.g. realm, province, ecoregion) unique site code, information on the disturbance type and timing, the pre-and post-disturbance coral cover, the 5-year annual recovery rate, the recovery shape and recovery completeness classifications. Please see details Methods in the journal article "Coral reef state influences resilience to acute climate-mediated disturbances" as published in Global Ecology and Biogeography.